Wall clock time and date at job start Wed Apr 1 2020 04:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46988 * 2 1 4 4 C 1.35426 * 116.99947 * 179.97438 * 3 2 1 5 5 N 1.32235 * 119.80037 * 0.26722 * 4 3 2 6 6 C 1.31882 * 121.80353 * 180.26473 * 5 4 3 7 7 C 1.38363 * 121.18036 * 359.75449 * 6 5 4 8 8 C 1.38335 * 119.45762 * 359.97061 * 7 6 5 9 9 C 1.50700 * 120.81942 * 180.02562 * 8 7 6 10 10 C 1.39980 * 118.35272 * 0.02562 * 8 7 6 11 11 C 1.47519 * 120.59691 * 180.02562 * 10 8 7 12 12 O 1.21591 * 120.00408 * 89.99896 * 11 10 8 13 13 N 1.34779 * 120.00085 * 269.99697 * 11 10 8 14 14 C 1.46500 * 120.00442 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46596 * 34.99879 * 14 13 11 16 16 C 1.52996 * 109.47249 * 275.00281 * 14 13 11 17 17 C 1.53002 * 109.46972 * 299.99946 * 16 14 13 18 18 C 1.52997 * 109.46817 * 299.99733 * 17 16 14 19 19 C 1.53006 * 109.47127 * 60.00361 * 18 17 16 20 20 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 21 21 N 1.46504 * 109.46883 * 180.02562 * 19 18 17 22 22 C 1.36936 * 119.99747 * 274.99621 * 21 19 18 23 23 H 1.08001 * 119.99986 * 359.97438 * 22 21 19 24 24 C 1.38806 * 119.99929 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00309 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00265 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46803 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47378 * 119.99590 * 26 24 22 29 29 H 1.48501 * 109.46907 * 240.00038 * 26 24 22 30 30 C 1.52997 * 109.47473 * 154.99976 * 14 13 11 31 31 H 1.09004 * 109.46636 * 60.00338 * 1 2 3 32 32 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47087 * 300.00302 * 1 2 3 34 34 H 1.08994 * 109.47087 * 239.99697 * 2 1 3 35 35 H 1.09004 * 109.46636 * 119.99662 * 2 1 3 36 36 H 1.07998 * 119.41344 * 179.72367 * 6 5 4 37 37 H 1.08001 * 120.26926 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47378 * 269.97635 * 9 8 7 39 39 H 1.08999 * 109.47495 * 29.97570 * 9 8 7 40 40 H 1.08999 * 109.47322 * 149.98154 * 9 8 7 41 41 H 0.96997 * 119.99462 * 359.97438 * 13 11 10 42 42 H 1.08996 * 109.47452 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.47054 * 59.99646 * 16 14 13 44 44 H 1.09002 * 109.47070 * 179.97438 * 17 16 14 45 45 H 1.08996 * 109.47407 * 59.99513 * 17 16 14 46 46 H 1.09001 * 109.47502 * 300.00518 * 18 17 16 47 47 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 48 48 H 0.97003 * 120.00173 * 95.00359 * 21 19 18 49 49 H 0.96993 * 120.00253 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.47153 * 300.00243 * 30 14 13 51 51 H 1.08993 * 109.47194 * 180.02562 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4733 -0.0043 6 6 5.4635 0.6003 0.0012 7 6 6.0625 1.8475 0.0073 8 6 5.2713 2.9822 0.0070 9 6 5.8913 4.3558 0.0129 10 6 3.8806 2.8229 0.0010 11 6 2.9901 3.9990 -0.0001 12 8 2.6273 4.4860 -1.0535 13 7 2.5785 4.5338 1.1666 14 6 1.6937 5.7014 1.1655 15 1 1.0078 5.6367 0.3209 16 6 2.5315 6.9760 1.0456 17 6 3.4944 7.0669 2.2311 18 6 2.6954 7.1026 3.5354 19 6 1.8576 5.8279 3.6554 20 1 2.5159 4.9593 3.6562 21 7 1.0921 5.8624 4.9040 22 6 1.6673 5.4373 6.0717 23 1 2.6851 5.0761 6.0720 24 6 0.9419 5.4695 7.2546 25 7 -0.2987 5.9091 7.2542 26 14 1.7263 4.8888 8.8475 27 1 3.1183 4.4455 8.5809 28 1 1.7406 6.0043 9.8277 29 1 0.9433 3.7543 9.4000 30 6 0.8948 5.7371 2.4698 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 6.0820 -0.2851 0.0014 37 1 7.1390 1.9344 0.0121 38 1 6.0363 4.6845 1.0420 39 1 6.8542 4.3221 -0.4967 40 1 5.2318 5.0543 -0.5020 41 1 2.8676 4.1451 2.0069 42 1 1.8732 7.8448 1.0443 43 1 3.1007 6.9506 0.1163 44 1 4.0915 7.9747 2.1454 45 1 4.1526 6.1981 2.2320 46 1 2.0370 7.9713 3.5346 47 1 3.3813 7.1678 4.3800 48 1 0.1777 6.1864 4.9036 49 1 -0.8055 5.9320 8.0809 50 1 0.2979 4.8291 2.5553 51 1 0.2362 6.6056 2.4688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981239937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:04 Heat of formation + Delta-G solvation = -45.716761 kcal Electronic energy + Delta-G solvation = -31808.786740 eV Core-core repulsion = 27707.957533 eV Total energy + Delta-G solvation = -4100.829208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.17307 -39.73008 -38.37895 -37.75417 -34.44565 -34.12516 -33.01736 -32.28599 -31.16571 -30.45801 -29.36060 -28.30638 -27.82273 -24.64390 -23.77663 -23.70208 -22.20673 -21.86893 -21.19143 -20.80909 -18.80986 -18.26645 -17.91901 -17.31674 -17.07303 -16.50491 -15.75107 -15.42274 -15.21495 -14.78794 -14.42893 -14.33125 -14.19778 -14.08753 -13.59063 -13.45990 -13.38707 -13.21632 -13.05246 -12.94022 -12.71837 -12.41150 -12.38728 -12.17428 -12.05549 -11.88393 -11.72301 -11.68925 -11.01444 -10.93839 -10.91245 -10.77629 -10.41327 -10.31643 -10.18103 -10.16501 -9.82353 -9.74897 -9.58979 -9.52644 -8.94264 -8.82899 -8.73391 -6.98134 -5.79159 -3.07948 0.69403 0.99613 2.60429 2.76676 3.22150 3.40639 3.46188 3.46605 3.48491 4.03893 4.39252 4.55007 4.63873 4.68595 4.82372 4.85193 4.90580 5.04168 5.10892 5.17391 5.18941 5.20452 5.26389 5.31867 5.48944 5.49128 5.57088 5.58594 5.68400 5.68877 5.71894 5.77556 5.87261 5.91751 5.95775 5.97819 6.06788 6.10932 6.16175 6.26418 6.29323 6.50025 6.56812 6.68129 6.71572 6.93642 7.02340 7.08220 7.53445 7.62109 7.67304 8.27519 8.39290 9.50659 10.08323 10.42845 11.43515 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.003316 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.563026 B = 8441.265693 C = 9201.714179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.297 6.297 4 C 0.360 3.640 5 N -0.544 5.544 6 C 0.157 3.843 7 C -0.217 4.217 8 C 0.028 3.972 9 C -0.126 4.126 10 C -0.202 4.202 11 C 0.581 3.419 12 O -0.537 6.537 13 N -0.705 5.705 14 C 0.151 3.849 15 H 0.085 0.915 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.136 4.136 19 C 0.181 3.819 20 H 0.040 0.960 21 N -0.724 5.724 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.133 4.133 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.403 0.597 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -8.120 -17.383 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.203 6.203 4 C 0.181 3.819 5 N -0.268 5.268 6 C 0.001 3.999 7 C -0.237 4.237 8 C 0.021 3.979 9 C -0.182 4.182 10 C -0.208 4.208 11 C 0.365 3.635 12 O -0.414 6.414 13 N -0.356 5.356 14 C 0.047 3.953 15 H 0.103 0.897 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.177 4.177 19 C 0.071 3.929 20 H 0.058 0.942 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.172 4.172 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.239 0.761 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.040 -8.475 -17.979 22.268 hybrid contribution 0.686 0.102 1.437 1.595 sum 10.726 -8.373 -16.542 21.419 Atomic orbital electron populations 1.21835 0.92715 1.02924 1.03764 1.22675 0.95097 0.80498 1.02501 1.86265 1.16229 1.31208 1.86605 1.19657 0.84406 0.88352 0.89492 1.67400 1.06619 1.32273 1.20555 1.22552 0.89105 0.97451 0.90795 1.21802 1.01409 0.92429 1.08107 1.20167 0.90425 0.97057 0.90296 1.20963 1.01463 0.91975 1.03800 1.19769 0.94216 0.92481 1.14361 1.17667 0.79542 0.82009 0.84255 1.90778 1.56895 1.62383 1.31303 1.46190 1.49706 1.31501 1.08226 1.20988 0.91163 0.84190 0.98999 0.89723 1.21899 0.98818 0.97354 0.98484 1.21507 0.97749 1.00808 0.95244 1.22279 0.99173 1.00651 0.95565 1.20140 0.92016 0.94720 0.86043 0.94187 1.42426 1.14327 1.77185 1.02539 1.19257 0.96925 1.34746 0.85978 0.91239 1.24724 0.96205 1.02131 0.97793 1.69665 1.09082 1.52738 1.26530 0.86167 0.78251 0.77955 0.84112 1.20606 1.21872 1.21896 1.22122 0.98613 1.03089 0.93363 0.91591 0.90200 0.91217 0.91571 0.91320 0.81967 0.83949 0.89425 0.90146 0.90370 0.76058 0.91059 0.92107 0.92821 0.92698 0.92525 0.92118 0.78239 0.93565 0.91192 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.07 0.74 6.03 37.16 0.22 0.97 16 3 O -0.30 -4.25 9.57 -17.97 -0.17 -4.42 16 4 C 0.36 5.02 7.51 -16.61 -0.12 4.89 16 5 N -0.54 -6.64 9.21 -12.98 -0.12 -6.76 16 6 C 0.16 1.45 11.17 -17.48 -0.20 1.26 16 7 C -0.22 -1.89 9.79 -39.50 -0.39 -2.28 16 8 C 0.03 0.31 5.95 -103.93 -0.62 -0.31 16 9 C -0.13 -1.12 9.69 36.01 0.35 -0.77 16 10 C -0.20 -2.75 5.66 -104.69 -0.59 -3.34 16 11 C 0.58 8.78 5.39 -12.48 -0.07 8.71 16 12 O -0.54 -9.68 16.77 5.29 0.09 -9.59 16 13 N -0.70 -9.94 4.23 -54.86 -0.23 -10.17 16 14 C 0.15 2.16 2.78 -67.93 -0.19 1.97 16 15 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 16 C -0.13 -1.68 5.60 -26.73 -0.15 -1.83 16 17 C -0.11 -1.55 5.77 -26.73 -0.15 -1.70 16 18 C -0.14 -2.31 5.50 -26.73 -0.15 -2.45 16 19 C 0.18 3.36 2.60 -67.93 -0.18 3.19 16 20 H 0.04 0.75 6.44 -51.93 -0.33 0.42 16 21 N -0.72 -17.47 5.12 -53.42 -0.27 -17.75 16 22 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 26 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C -0.13 -2.13 5.07 -26.73 -0.14 -2.26 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.08 0.82 7.19 -51.93 -0.37 0.45 16 41 H 0.40 5.63 6.85 -40.82 -0.28 5.35 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.71 7.60 -51.93 -0.39 0.32 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.38 9.93 7.80 -40.82 -0.32 9.62 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -32.96 412.63 -9.42 -42.37 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -8.40 Total: 12.10 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.23 Total: -2.04 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.10 Total: -61.68 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.08 Total: -14.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.96 -9.42 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981239937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.345 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds