Wall clock time and date at job start Wed Apr 1 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47112 * 2 1 4 4 C 1.35429 * 116.99855 * 180.02562 * 3 2 1 5 5 N 1.32233 * 119.79911 * 0.02562 * 4 3 2 6 6 C 1.31881 * 121.79824 * 180.02562 * 5 4 3 7 7 C 1.38360 * 121.18692 * 359.97081 * 6 5 4 8 8 C 1.38337 * 119.45633 * 0.02876 * 7 6 5 9 9 C 1.50701 * 120.82275 * 179.97438 * 8 7 6 10 10 C 1.39983 * 118.34810 * 0.02562 * 8 7 6 11 11 C 1.47535 * 120.59401 * 179.97438 * 10 8 7 12 12 O 1.21582 * 119.99828 * 269.98086 * 11 10 8 13 13 N 1.34770 * 119.99785 * 89.98042 * 11 10 8 14 14 C 1.46932 * 120.63424 * 359.71701 * 13 11 10 15 15 C 1.53627 * 108.54090 * 126.36935 * 14 13 11 16 16 C 1.53033 * 109.24395 * 54.85910 * 15 14 13 17 17 N 1.46497 * 109.46428 * 178.48781 * 16 15 14 18 18 C 1.46501 * 119.99918 * 60.06564 * 17 16 15 19 19 C 1.36934 * 120.00180 * 240.06953 * 17 16 15 20 20 H 1.08001 * 120.00032 * 22.99440 * 19 17 16 21 21 C 1.38816 * 119.99926 * 202.98754 * 19 17 16 22 22 N 1.31614 * 120.00162 * 11.63969 * 21 19 17 23 23 Si 1.86801 * 119.99902 * 191.64041 * 21 19 17 24 24 H 1.48500 * 109.47319 * 60.00089 * 23 21 19 25 25 H 1.48498 * 109.46812 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46988 * 300.00098 * 23 21 19 27 27 C 1.53040 * 109.53696 * 298.51067 * 16 15 14 28 28 C 1.46931 * 120.62980 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46940 * 299.99637 * 1 2 3 31 31 H 1.08998 * 109.47121 * 59.99583 * 1 2 3 32 32 H 1.08998 * 109.47035 * 240.00094 * 2 1 3 33 33 H 1.08998 * 109.47121 * 120.00417 * 2 1 3 34 34 H 1.08000 * 119.40943 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.26692 * 179.75127 * 7 6 5 36 36 H 1.08995 * 109.47017 * 90.00308 * 9 8 7 37 37 H 1.09004 * 109.46556 * 210.00050 * 9 8 7 38 38 H 1.09001 * 109.47146 * 330.00078 * 9 8 7 39 39 H 1.08996 * 109.58735 * 246.20200 * 14 13 11 40 40 H 1.09002 * 109.58342 * 6.63314 * 14 13 11 41 41 H 1.09004 * 109.63620 * 294.86522 * 15 14 13 42 42 H 1.09003 * 109.42739 * 174.72794 * 15 14 13 43 43 H 1.09003 * 109.45846 * 58.52640 * 16 15 14 44 44 H 1.09003 * 109.47085 * 93.84778 * 18 17 16 45 45 H 1.08993 * 109.47372 * 213.85123 * 18 17 16 46 46 H 1.09006 * 109.47295 * 333.85398 * 18 17 16 47 47 H 0.96998 * 120.00402 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.49710 * 301.41063 * 27 16 15 49 49 H 1.09008 * 109.52307 * 181.32950 * 27 16 15 50 50 H 1.08998 * 109.58594 * 353.37307 * 28 13 11 51 51 H 1.09002 * 109.58379 * 113.65764 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5246 -0.0005 5 7 4.1507 0.4731 -0.0015 6 6 5.4634 0.6002 -0.0016 7 6 6.0625 1.8474 -0.0012 8 6 5.2713 2.9821 -0.0001 9 6 5.8913 4.3557 0.0009 10 6 3.8806 2.8228 0.0011 11 6 2.9900 3.9990 0.0028 12 8 2.6238 4.4826 1.0565 13 7 2.5825 4.5373 -1.1636 14 6 3.0216 3.9679 -2.4449 15 6 1.7792 3.6658 -3.2966 16 6 0.9377 4.9370 -3.4297 17 7 -0.2300 4.6636 -4.2711 18 6 -1.1982 3.6399 -3.8701 19 6 -0.4164 5.3648 -5.4324 20 1 0.4257 5.8293 -5.9239 21 6 -1.6878 5.4786 -5.9780 22 7 -2.7403 5.1172 -5.2752 23 14 -1.9048 6.1445 -7.7098 24 1 -1.1791 5.2740 -8.6694 25 1 -3.3491 6.1658 -8.0544 26 1 -1.3587 7.5236 -7.7818 27 6 0.4726 5.3904 -2.0439 28 6 1.6952 5.7084 -1.1780 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.0819 -0.2852 -0.0029 35 1 7.1390 1.9341 0.0028 36 1 6.0405 4.6877 -1.0265 37 1 5.2296 5.0525 0.5155 38 1 6.8521 4.3203 0.5145 39 1 3.6585 4.6841 -2.9640 40 1 3.5755 3.0466 -2.2646 41 1 1.1872 2.8861 -2.8172 42 1 2.0906 3.3303 -4.2858 43 1 1.5380 5.7237 -3.8866 44 1 -2.0112 4.1067 -3.3139 45 1 -1.5991 3.1513 -4.7580 46 1 -0.7047 2.9000 -3.2398 47 1 -3.6287 5.1971 -5.6563 48 1 -0.1070 4.5946 -1.5763 49 1 -0.1463 6.2824 -2.1412 50 1 1.3738 5.9358 -0.1617 51 1 2.2268 6.5645 -1.5935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985549804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:51 Heat of formation + Delta-G solvation = -13.513966 kcal Electronic energy + Delta-G solvation = -32448.993685 eV Core-core repulsion = 28349.560895 eV Total energy + Delta-G solvation = -4099.432790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21931 -39.53556 -38.29846 -37.39389 -35.00490 -34.12917 -32.44683 -31.98699 -30.89640 -30.11753 -29.54603 -28.30879 -25.97947 -25.32887 -24.03893 -23.68967 -22.78936 -22.13835 -21.62469 -20.03432 -18.69433 -18.21440 -17.32031 -17.26002 -16.73334 -16.48770 -16.00806 -15.31210 -14.99829 -14.69006 -14.36034 -14.18163 -13.97719 -13.90784 -13.53299 -13.41945 -13.37879 -13.13691 -12.94660 -12.79426 -12.63315 -12.35458 -12.31902 -12.17660 -12.15868 -11.65649 -11.60592 -11.44350 -10.91856 -10.86394 -10.83413 -10.76018 -10.38087 -10.29089 -10.22835 -10.08939 -9.83361 -9.80779 -9.60171 -9.48494 -8.67859 -8.54173 -8.42100 -6.72232 -5.69917 -3.16234 0.71285 1.00454 2.61896 2.82100 3.11277 3.38902 3.44503 3.45075 3.46186 4.02499 4.39092 4.47920 4.51621 4.65943 4.82747 4.93698 4.98920 5.08729 5.15377 5.21563 5.27207 5.28468 5.29054 5.39941 5.47161 5.52550 5.55545 5.58918 5.65617 5.70831 5.78797 5.80124 5.92406 5.95982 6.03890 6.07088 6.17795 6.20232 6.29493 6.42259 6.57334 6.66618 6.84202 7.02159 7.04967 7.08243 7.42530 7.50917 7.58937 7.76287 7.82592 8.24512 8.42588 9.26381 9.89975 10.39915 11.34793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003201 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.739609 B = 8745.251789 C = 9554.996319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.294 6.294 4 C 0.360 3.640 5 N -0.543 5.543 6 C 0.155 3.845 7 C -0.217 4.217 8 C 0.023 3.977 9 C -0.124 4.124 10 C -0.194 4.194 11 C 0.580 3.420 12 O -0.539 6.539 13 N -0.593 5.593 14 C 0.115 3.885 15 C -0.145 4.145 16 C 0.181 3.819 17 N -0.596 5.596 18 C 0.166 3.834 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.907 5.907 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 C -0.143 4.143 28 C 0.114 3.886 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.041 0.959 46 H -0.003 1.003 47 H 0.252 0.748 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.633 -8.552 10.768 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.200 6.200 4 C 0.181 3.819 5 N -0.268 5.268 6 C -0.001 4.001 7 C -0.238 4.238 8 C 0.015 3.985 9 C -0.180 4.180 10 C -0.200 4.200 11 C 0.366 3.634 12 O -0.416 6.416 13 N -0.325 5.325 14 C -0.009 4.009 15 C -0.185 4.185 16 C 0.072 3.928 17 N -0.317 5.317 18 C 0.022 3.978 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.184 4.184 28 C -0.008 4.008 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.565 -8.921 11.241 21.917 hybrid contribution 0.132 0.732 -1.016 1.259 sum 16.697 -8.189 10.225 21.223 Atomic orbital electron populations 1.21838 0.92577 1.02904 1.03976 1.22674 0.95217 0.80421 1.02341 1.86303 1.16070 1.31210 1.86402 1.19666 0.84517 0.88277 0.89455 1.67417 1.06586 1.32254 1.20507 1.22541 0.89133 0.97405 0.91054 1.21776 1.01305 0.92409 1.08270 1.20152 0.90404 0.97031 0.90870 1.20930 1.01419 0.92071 1.03573 1.19718 0.94176 0.92541 1.13573 1.17715 0.79688 0.82215 0.83791 1.90770 1.57355 1.62559 1.30960 1.48098 1.47870 1.31039 1.05533 1.21825 0.97390 0.98027 0.83633 1.22534 0.95727 1.01227 0.99048 1.20263 0.89241 0.93581 0.89674 1.43932 1.23979 1.41068 1.22728 1.20714 0.90844 0.88841 0.97438 1.19175 0.92279 1.28554 0.98469 0.91547 1.25019 0.95514 1.00343 0.98702 1.70056 0.97454 1.52144 1.35581 0.86353 0.76685 0.78882 0.84692 1.21156 1.21692 1.20985 1.22482 0.96263 1.02409 0.97221 1.21727 0.91030 0.86220 1.01844 0.90209 0.91577 0.91052 0.91393 0.91662 0.82014 0.84017 0.89654 0.90479 0.90160 0.91344 0.91208 0.91777 0.91009 0.91988 0.95532 0.94043 0.98499 0.93757 0.92121 0.90582 0.89587 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.28 37.16 0.38 -1.31 16 2 C 0.07 0.82 6.03 37.16 0.22 1.05 16 3 O -0.29 -4.51 9.57 -17.98 -0.17 -4.68 16 4 C 0.36 5.19 7.38 -16.61 -0.12 5.07 16 5 N -0.54 -6.72 9.21 -12.98 -0.12 -6.84 16 6 C 0.15 1.42 11.17 -17.49 -0.20 1.22 16 7 C -0.22 -1.85 9.79 -39.50 -0.39 -2.23 16 8 C 0.02 0.25 5.95 -103.93 -0.62 -0.37 16 9 C -0.12 -1.07 9.69 36.01 0.35 -0.73 16 10 C -0.19 -2.74 3.65 -104.69 -0.38 -3.12 16 11 C 0.58 9.47 5.30 -12.47 -0.07 9.41 16 12 O -0.54 -10.50 16.52 5.29 0.09 -10.41 16 13 N -0.59 -9.12 2.97 -173.75 -0.52 -9.63 16 14 C 0.11 1.60 6.37 -3.48 -0.02 1.58 16 15 C -0.15 -2.46 5.34 -26.39 -0.14 -2.60 16 16 C 0.18 3.58 2.55 -67.89 -0.17 3.41 16 17 N -0.60 -14.63 2.81 -173.44 -0.49 -15.11 16 18 C 0.17 4.10 8.03 59.85 0.48 4.58 16 19 C -0.26 -6.89 9.59 -15.06 -0.14 -7.04 16 20 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 21 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 22 N -0.91 -26.37 10.64 55.49 0.59 -25.78 16 23 Si 0.90 21.69 29.57 -169.99 -5.03 16.67 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.14 -2.67 5.34 -26.63 -0.14 -2.81 16 28 C 0.11 1.81 6.43 -3.73 -0.02 1.78 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.82 7.18 -51.93 -0.37 0.45 16 38 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.93 6.23 -51.93 -0.32 0.60 16 41 H 0.06 1.18 6.72 -51.93 -0.35 0.83 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 44 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 45 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 46 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.06 1.22 7.72 -51.93 -0.40 0.82 16 49 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 50 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -33.22 406.12 -8.94 -42.17 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.35 Total: -0.36 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.07 Total: 7.87 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.53 Total: -57.37 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.08 Total: -15.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.22 -8.94 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.652 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds