Wall clock time and date at job start Wed Apr 1 2020 04:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47112 * 2 1 4 4 C 1.35429 * 116.99855 * 180.02562 * 3 2 1 5 5 N 1.32233 * 119.79911 * 0.02562 * 4 3 2 6 6 C 1.31881 * 121.79824 * 180.02562 * 5 4 3 7 7 C 1.38360 * 121.18692 * 359.97081 * 6 5 4 8 8 C 1.38337 * 119.45633 * 0.02876 * 7 6 5 9 9 C 1.50701 * 120.82275 * 179.97438 * 8 7 6 10 10 C 1.39983 * 118.34810 * 0.02562 * 8 7 6 11 11 C 1.47535 * 120.59401 * 179.97438 * 10 8 7 12 12 O 1.21582 * 119.99828 * 269.98086 * 11 10 8 13 13 N 1.34770 * 119.99785 * 89.98042 * 11 10 8 14 14 C 1.46932 * 120.63424 * 359.71701 * 13 11 10 15 15 C 1.53627 * 108.54090 * 126.36935 * 14 13 11 16 16 C 1.53033 * 109.24395 * 54.85910 * 15 14 13 17 17 N 1.46497 * 109.46428 * 178.48781 * 16 15 14 18 18 C 1.46501 * 119.99918 * 60.06564 * 17 16 15 19 19 C 1.36934 * 120.00180 * 240.06953 * 17 16 15 20 20 H 1.08001 * 120.00032 * 22.99440 * 19 17 16 21 21 C 1.38816 * 119.99926 * 202.98754 * 19 17 16 22 22 N 1.31614 * 120.00162 * 11.63969 * 21 19 17 23 23 Si 1.86801 * 119.99902 * 191.64041 * 21 19 17 24 24 H 1.48500 * 109.47319 * 60.00089 * 23 21 19 25 25 H 1.48498 * 109.46812 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46988 * 300.00098 * 23 21 19 27 27 C 1.53040 * 109.53696 * 298.51067 * 16 15 14 28 28 C 1.46931 * 120.62980 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46940 * 299.99637 * 1 2 3 31 31 H 1.08998 * 109.47121 * 59.99583 * 1 2 3 32 32 H 1.08998 * 109.47035 * 240.00094 * 2 1 3 33 33 H 1.08998 * 109.47121 * 120.00417 * 2 1 3 34 34 H 1.08000 * 119.40943 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.26692 * 179.75127 * 7 6 5 36 36 H 1.08995 * 109.47017 * 90.00308 * 9 8 7 37 37 H 1.09004 * 109.46556 * 210.00050 * 9 8 7 38 38 H 1.09001 * 109.47146 * 330.00078 * 9 8 7 39 39 H 1.08996 * 109.58735 * 246.20200 * 14 13 11 40 40 H 1.09002 * 109.58342 * 6.63314 * 14 13 11 41 41 H 1.09004 * 109.63620 * 294.86522 * 15 14 13 42 42 H 1.09003 * 109.42739 * 174.72794 * 15 14 13 43 43 H 1.09003 * 109.45846 * 58.52640 * 16 15 14 44 44 H 1.09003 * 109.47085 * 93.84778 * 18 17 16 45 45 H 1.08993 * 109.47372 * 213.85123 * 18 17 16 46 46 H 1.09006 * 109.47295 * 333.85398 * 18 17 16 47 47 H 0.96998 * 120.00402 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.49710 * 301.41063 * 27 16 15 49 49 H 1.09008 * 109.52307 * 181.32950 * 27 16 15 50 50 H 1.08998 * 109.58594 * 353.37307 * 28 13 11 51 51 H 1.09002 * 109.58379 * 113.65764 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5246 -0.0005 5 7 4.1507 0.4731 -0.0015 6 6 5.4634 0.6002 -0.0016 7 6 6.0625 1.8474 -0.0012 8 6 5.2713 2.9821 -0.0001 9 6 5.8913 4.3557 0.0009 10 6 3.8806 2.8228 0.0011 11 6 2.9900 3.9990 0.0028 12 8 2.6238 4.4826 1.0565 13 7 2.5825 4.5373 -1.1636 14 6 3.0216 3.9679 -2.4449 15 6 1.7792 3.6658 -3.2966 16 6 0.9377 4.9370 -3.4297 17 7 -0.2300 4.6636 -4.2711 18 6 -1.1982 3.6399 -3.8701 19 6 -0.4164 5.3648 -5.4324 20 1 0.4257 5.8293 -5.9239 21 6 -1.6878 5.4786 -5.9780 22 7 -2.7403 5.1172 -5.2752 23 14 -1.9048 6.1445 -7.7098 24 1 -1.1791 5.2740 -8.6694 25 1 -3.3491 6.1658 -8.0544 26 1 -1.3587 7.5236 -7.7818 27 6 0.4726 5.3904 -2.0439 28 6 1.6952 5.7084 -1.1780 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.0819 -0.2852 -0.0029 35 1 7.1390 1.9341 0.0028 36 1 6.0405 4.6877 -1.0265 37 1 5.2296 5.0525 0.5155 38 1 6.8521 4.3203 0.5145 39 1 3.6585 4.6841 -2.9640 40 1 3.5755 3.0466 -2.2646 41 1 1.1872 2.8861 -2.8172 42 1 2.0906 3.3303 -4.2858 43 1 1.5380 5.7237 -3.8866 44 1 -2.0112 4.1067 -3.3139 45 1 -1.5991 3.1513 -4.7580 46 1 -0.7047 2.9000 -3.2398 47 1 -3.6287 5.1971 -5.6563 48 1 -0.1070 4.5946 -1.5763 49 1 -0.1463 6.2824 -2.1412 50 1 1.3738 5.9358 -0.1617 51 1 2.2268 6.5645 -1.5935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985549804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:50 Heat of formation + Delta-G solvation = -34.942988 kcal Electronic energy + Delta-G solvation = -32449.922917 eV Core-core repulsion = 28349.560895 eV Total energy + Delta-G solvation = -4100.362022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18844 -40.74591 -39.26408 -38.87026 -36.71159 -34.98318 -33.93599 -33.18851 -32.18967 -31.52982 -30.86530 -29.05650 -28.04580 -26.70995 -25.25747 -24.58636 -24.16812 -23.62500 -22.61797 -21.40406 -20.07470 -19.12201 -18.76644 -18.52002 -18.14767 -17.54381 -17.20722 -16.92016 -16.17698 -15.81742 -15.69819 -15.35675 -15.21452 -15.09478 -15.04785 -14.84298 -14.52299 -14.17428 -14.11829 -13.94628 -13.70543 -13.60121 -13.44355 -13.23389 -13.20699 -13.12697 -12.87433 -12.78577 -12.61910 -12.53001 -12.38024 -12.26418 -12.10408 -11.84204 -11.78298 -11.65985 -11.39821 -11.22671 -10.67028 -10.61790 -10.48089 -9.74528 -9.54688 -8.76539 -7.80167 -5.28966 -0.11742 0.20015 1.40153 1.47880 1.50070 1.56513 1.92775 1.94049 2.52092 2.63797 3.17993 3.33438 3.47809 3.61338 3.70083 3.83441 3.86499 4.01181 4.04584 4.09956 4.11540 4.13734 4.25638 4.34073 4.36288 4.45236 4.50859 4.60401 4.66924 4.69580 4.73475 4.76782 4.78184 4.82767 4.85779 4.89233 4.95725 5.04889 5.08334 5.14615 5.21837 5.23612 5.33614 5.46376 5.47930 5.55539 5.66087 5.69645 6.17196 6.29498 6.35014 6.75264 7.00862 7.16637 7.88927 8.35087 9.23382 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003201 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.739609 B = 8745.251789 C = 9554.996319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.069 3.931 3 O -0.326 6.326 4 C 0.338 3.662 5 N -0.556 5.556 6 C 0.155 3.845 7 C -0.199 4.199 8 C 0.021 3.979 9 C -0.122 4.122 10 C -0.224 4.224 11 C 0.582 3.418 12 O -0.581 6.581 13 N -0.593 5.593 14 C 0.125 3.875 15 C -0.132 4.132 16 C 0.177 3.823 17 N -0.610 5.610 18 C 0.188 3.812 19 C -0.261 4.261 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.942 5.942 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.274 1.274 27 C -0.131 4.131 28 C 0.123 3.877 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.203 0.797 35 H 0.185 0.815 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.070 0.930 44 H -0.004 1.004 45 H 0.015 0.985 46 H 0.018 0.982 47 H 0.246 0.754 48 H 0.035 0.965 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.798 -9.149 10.181 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.006 4.006 3 O -0.233 6.233 4 C 0.159 3.841 5 N -0.281 5.281 6 C -0.001 4.001 7 C -0.219 4.219 8 C 0.013 3.987 9 C -0.178 4.178 10 C -0.230 4.230 11 C 0.370 3.630 12 O -0.461 6.461 13 N -0.324 5.324 14 C 0.002 3.998 15 C -0.172 4.172 16 C 0.071 3.929 17 N -0.332 5.332 18 C 0.043 3.957 19 C -0.392 4.392 20 H 0.094 0.906 21 C -0.249 4.249 22 N -0.589 5.589 23 Si 0.798 3.202 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.199 1.199 27 C -0.171 4.171 28 C 0.000 4.000 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.219 0.781 35 H 0.202 0.798 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.014 0.986 45 H 0.034 0.966 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.784 -9.522 10.649 25.220 hybrid contribution -1.047 0.859 -0.775 1.560 sum 19.737 -8.663 9.874 23.709 Atomic orbital electron populations 1.21850 0.92240 1.04259 1.02528 1.22770 0.95456 0.79612 1.02747 1.86260 1.17387 1.32728 1.86942 1.19819 0.84372 0.88951 0.90944 1.67473 1.08016 1.31564 1.21028 1.23343 0.88287 0.99436 0.89000 1.22231 1.03131 0.91017 1.05526 1.20526 0.89171 0.98969 0.90051 1.20996 1.01953 0.90245 1.04575 1.19709 0.95314 0.91262 1.16674 1.18116 0.79359 0.82354 0.83123 1.90733 1.59046 1.63983 1.32384 1.48147 1.47445 1.30729 1.06097 1.21844 0.96033 0.99499 0.82422 1.22331 0.96334 0.98811 0.99738 1.20478 0.87978 0.95267 0.89225 1.44165 1.24977 1.40887 1.23180 1.20338 0.90389 0.89022 0.95962 1.19585 0.92538 1.27764 0.99265 0.90592 1.25812 0.95361 1.01348 1.02396 1.70244 0.97557 1.53943 1.37119 0.85311 0.76015 0.78633 0.80290 1.20348 1.22520 1.19947 1.22269 0.97092 1.00621 0.97122 1.21576 0.90243 0.87431 1.00701 0.87448 0.92389 0.93005 0.91066 0.90966 0.78072 0.79751 0.88107 0.93039 0.87229 0.88408 0.89892 0.93800 0.90641 0.91214 0.98609 0.96632 0.96374 0.94478 0.94585 0.92377 0.90590 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 10.28 71.98 0.74 -2.68 16 2 C 0.07 1.68 6.03 71.98 0.43 2.11 16 3 O -0.33 -10.32 9.57 -87.25 -0.84 -11.15 16 4 C 0.34 9.56 7.38 85.13 0.63 10.19 16 5 N -0.56 -12.71 9.21 -308.00 -2.84 -15.54 16 6 C 0.15 2.23 11.17 84.71 0.95 3.18 16 7 C -0.20 -2.46 9.79 22.32 0.22 -2.24 16 8 C 0.02 0.39 5.95 -19.42 -0.12 0.27 16 9 C -0.12 -1.72 9.69 71.24 0.69 -1.03 16 10 C -0.22 -6.10 3.65 -19.91 -0.07 -6.17 16 11 C 0.58 19.09 5.30 86.70 0.46 19.55 16 12 O -0.58 -23.36 16.52 -3.97 -0.07 -23.43 16 13 N -0.59 -17.88 2.97 -821.89 -2.44 -20.32 16 14 C 0.12 3.24 6.37 86.51 0.55 3.79 16 15 C -0.13 -4.39 5.34 30.82 0.16 -4.22 16 16 C 0.18 6.99 2.55 45.02 0.11 7.11 16 17 N -0.61 -30.50 2.81 -702.64 -1.97 -32.47 16 18 C 0.19 9.70 8.03 127.77 1.03 10.73 16 19 C -0.26 -14.17 9.59 84.03 0.81 -13.37 16 20 H 0.08 3.90 7.82 -2.91 -0.02 3.88 16 21 C -0.05 -3.05 5.12 84.86 0.43 -2.62 16 22 N -0.94 -56.58 10.64 21.65 0.23 -56.35 16 23 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 C -0.13 -5.01 5.34 30.66 0.16 -4.84 16 28 C 0.12 3.89 6.43 86.35 0.55 4.45 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.02 7.18 -2.39 -0.02 1.00 16 38 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.02 6.23 -2.39 -0.01 2.01 16 41 H 0.04 1.63 6.72 -2.39 -0.02 1.62 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.65 7.86 -2.39 -0.02 2.63 16 44 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 45 H 0.01 0.84 7.22 -2.39 -0.02 0.82 16 46 H 0.02 0.83 6.46 -2.38 -0.02 0.82 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.04 1.53 7.72 -2.39 -0.02 1.51 16 49 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 50 H 0.08 2.59 7.00 -2.39 -0.02 2.57 16 51 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.43 406.12 2.77 -73.66 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.91 Total: 14.46 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 7.74 Total: 24.21 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -7.02 Total: -124.69 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.90 Total: -34.58 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.43 2.77 -73.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds