Wall clock time and date at job start Wed Apr 1 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47148 * 2 1 4 4 C 1.35679 * 117.00206 * 180.02562 * 3 2 1 5 5 C 1.38893 * 119.62352 * 180.30355 * 4 3 2 6 6 C 1.39573 * 118.94579 * 180.27297 * 5 4 3 7 7 C 1.48170 * 120.89152 * 179.71313 * 6 5 4 8 8 O 1.21507 * 119.99880 * 359.71290 * 7 6 5 9 9 N 1.34774 * 119.99619 * 179.72096 * 7 6 5 10 10 C 1.46503 * 119.99785 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47033 * 34.99564 * 10 9 7 12 12 C 1.53001 * 109.46870 * 274.99746 * 10 9 7 13 13 C 1.52997 * 109.47279 * 154.99848 * 10 9 7 14 14 H 1.08999 * 109.49888 * 59.93555 * 13 10 9 15 15 C 1.53041 * 109.49872 * 179.97438 * 13 10 9 16 16 C 1.53042 * 109.53839 * 181.31723 * 15 13 10 17 17 C 1.53191 * 109.30938 * 298.63242 * 16 15 13 18 18 N 1.46927 * 108.77570 * 54.63926 * 17 16 15 19 19 C 1.36938 * 120.63083 * 126.41082 * 18 17 16 20 20 H 1.07991 * 119.99973 * 207.67297 * 19 18 17 21 21 C 1.38809 * 120.00009 * 27.67399 * 19 18 17 22 22 N 1.31621 * 120.00175 * 17.35300 * 21 19 18 23 23 Si 1.86797 * 119.99968 * 197.35578 * 21 19 18 24 24 H 1.48500 * 109.47054 * 90.00240 * 23 21 19 25 25 H 1.48506 * 109.47073 * 209.99907 * 23 21 19 26 26 H 1.48500 * 109.47361 * 329.99817 * 23 21 19 27 27 C 1.46924 * 118.73766 * 306.38351 * 18 17 16 28 28 C 1.39972 * 118.21802 * 359.43397 * 6 5 4 29 29 C 1.37980 * 119.12840 * 0.27831 * 28 6 5 30 30 N 1.31907 * 120.97786 * 0.02562 * 29 28 6 31 31 H 1.08991 * 109.47568 * 59.99368 * 1 2 3 32 32 H 1.08998 * 109.46931 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46874 * 299.99280 * 1 2 3 34 34 H 1.09001 * 109.46874 * 240.00720 * 2 1 3 35 35 H 1.08995 * 109.47297 * 120.00190 * 2 1 3 36 36 H 1.07998 * 120.53315 * 359.97438 * 5 4 3 37 37 H 0.97004 * 120.00726 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47144 * 299.99750 * 12 10 9 39 39 H 1.09000 * 109.46969 * 60.00047 * 12 10 9 40 40 H 1.09004 * 109.47350 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.45908 * 301.33492 * 15 13 10 42 42 H 1.08999 * 109.46004 * 61.31019 * 15 13 10 43 43 H 1.09004 * 109.49865 * 58.58479 * 16 15 13 44 44 H 1.09001 * 109.49350 * 178.64818 * 16 15 13 45 45 H 1.09000 * 109.58176 * 174.42592 * 17 16 15 46 46 H 1.08997 * 109.58929 * 294.84680 * 17 16 15 47 47 H 0.96997 * 120.00152 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.58833 * 293.82936 * 27 18 17 49 49 H 1.08998 * 109.58418 * 173.39779 * 27 18 17 50 50 H 1.07996 * 120.43489 * 180.25536 * 28 6 5 51 51 H 1.08001 * 119.50225 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5251 -0.0005 5 6 3.8739 2.8120 0.0058 6 6 5.2596 2.9786 -0.0006 7 6 5.8631 4.3318 -0.0006 8 8 5.1496 5.3153 -0.0002 9 7 7.2036 4.4717 -0.0012 10 6 7.8004 5.8097 -0.0018 11 1 7.1798 6.4846 0.5877 12 6 7.8927 6.3263 -1.4390 13 6 9.2023 5.7431 0.6073 14 1 9.8230 5.0674 0.0187 15 6 9.8266 7.1404 0.6064 16 6 11.2415 7.0692 1.1853 17 6 11.1724 6.5715 2.6324 18 7 10.4445 5.2954 2.6593 19 6 10.9991 4.1881 3.2437 20 1 10.7219 3.2016 2.9027 21 6 11.9175 4.3336 4.2743 22 7 12.0065 5.4771 4.9199 23 14 13.0271 2.9065 4.7449 24 1 14.2809 2.9719 3.9518 25 1 13.3518 2.9881 6.1917 26 1 12.3308 1.6250 4.4654 27 6 9.1101 5.2303 2.0479 28 6 6.0639 1.8330 -0.0011 29 6 5.4634 0.5908 -0.0011 30 7 4.1497 0.4717 -0.0012 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.2183 3.6703 0.0108 37 1 7.7733 3.6866 -0.0013 38 1 8.5133 5.6514 -2.0285 39 1 6.8939 6.3738 -1.8728 40 1 8.3363 7.3220 -1.4394 41 1 9.8708 7.5177 -0.4152 42 1 9.2188 7.8100 1.2149 43 1 11.8431 6.3805 0.5920 44 1 11.6943 8.0605 1.1622 45 1 12.1817 6.4246 3.0169 46 1 10.6484 7.3041 3.2462 47 1 12.6480 5.5786 5.6403 48 1 8.4180 5.8536 2.6140 49 1 8.7588 4.1985 2.0467 50 1 7.1403 1.9204 -0.0019 51 1 6.0782 -0.2972 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025530296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:40 Heat of formation + Delta-G solvation = -26.850916 kcal Electronic energy + Delta-G solvation = -30629.391958 eV Core-core repulsion = 26529.380835 eV Total energy + Delta-G solvation = -4100.011123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.07528 -39.83432 -38.30344 -37.76128 -35.33935 -33.36026 -32.74269 -32.39211 -30.95635 -30.49200 -30.04325 -28.52107 -25.64116 -25.12066 -23.74880 -23.54860 -22.78745 -21.96619 -20.89611 -20.46138 -19.39822 -18.61416 -17.48201 -16.88713 -16.58631 -16.46537 -15.94143 -15.71741 -15.13247 -14.83070 -14.59859 -14.37169 -14.17916 -14.11360 -13.92785 -13.65584 -13.42653 -13.22162 -12.95900 -12.76874 -12.58816 -12.49661 -12.28131 -12.24682 -11.85026 -11.83828 -11.58204 -11.14929 -11.08290 -10.99432 -10.71259 -10.45892 -10.37706 -10.21218 -10.17857 -10.15498 -9.93896 -9.84462 -9.58287 -9.46105 -9.00555 -8.80769 -8.48856 -6.70059 -5.81287 -3.24078 0.48448 0.87790 2.59521 2.78382 3.13574 3.34868 3.41556 3.43035 3.61667 3.99648 4.38484 4.45205 4.66344 4.68090 4.71213 4.76603 4.81678 4.95023 5.05254 5.21259 5.31748 5.33640 5.37346 5.43307 5.49293 5.50222 5.53575 5.57078 5.69618 5.72633 5.77075 5.79546 5.97908 6.00961 6.04598 6.09943 6.25555 6.31352 6.39455 6.47754 6.58686 6.68054 6.76834 6.84420 6.94695 6.95375 7.37976 7.44686 7.51543 7.65375 7.75942 8.10854 8.41880 9.18283 9.81925 10.38734 11.26903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002515 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.702419 B =11131.832934 C =12926.280095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.319 3.681 5 C -0.134 4.134 6 C -0.049 4.049 7 C 0.559 3.441 8 O -0.530 6.530 9 N -0.707 5.707 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.162 4.162 13 C -0.111 4.111 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.155 3.845 28 C -0.179 4.179 29 C 0.139 3.861 30 N -0.529 5.529 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.154 0.846 37 H 0.402 0.598 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.017 0.983 47 H 0.254 0.746 48 H 0.017 0.983 49 H 0.050 0.950 50 H 0.145 0.855 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -7.303 -13.617 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.140 3.860 5 C -0.155 4.155 6 C -0.060 4.060 7 C 0.344 3.656 8 O -0.407 6.407 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.132 4.132 14 H 0.091 0.909 15 C -0.139 4.139 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.200 4.200 29 C -0.016 4.016 30 N -0.253 5.253 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.171 0.829 37 H 0.238 0.762 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.035 0.965 49 H 0.069 0.931 50 H 0.162 0.838 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.755 -7.180 -13.442 21.920 hybrid contribution 1.380 -0.558 0.365 1.532 sum -14.376 -7.738 -13.077 20.917 Atomic orbital electron populations 1.21827 0.92955 1.02911 1.03431 1.22626 0.94795 0.80900 1.02583 1.86251 1.16505 1.30815 1.87690 1.19621 0.84231 0.89465 0.92665 1.21120 0.94627 0.96391 1.03397 1.20192 0.93269 0.94034 0.98475 1.18030 0.82678 0.87882 0.76972 1.90775 1.61148 1.39384 1.49380 1.46005 1.05860 1.10247 1.73693 1.21136 0.95027 0.82851 0.96706 0.89321 1.22208 1.01843 1.01694 0.96259 1.21987 0.92915 0.98704 0.99597 0.90945 1.21446 0.97423 0.95371 0.99670 1.22176 0.95236 0.99702 1.00991 1.20801 0.98858 0.86152 0.89903 1.44043 1.12926 1.08647 1.65705 1.19153 1.21303 0.86221 1.11591 0.91745 1.25041 1.01778 0.97003 0.95839 1.70040 1.36965 1.24811 1.22707 0.86299 0.81115 0.82026 0.77366 1.21455 1.21788 1.20461 1.20864 0.88451 0.98093 0.89785 1.22224 1.01509 0.92671 1.03592 1.22387 0.88881 0.97344 0.93030 1.67204 1.06898 1.33310 1.17921 0.91620 0.90262 0.91544 0.91568 0.91488 0.82854 0.76235 0.92576 0.92589 0.91085 0.93065 0.92537 0.92769 0.93209 0.89548 0.96496 0.93615 0.96503 0.93142 0.83779 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.07 0.56 6.03 37.16 0.22 0.79 16 3 O -0.31 -3.47 10.11 -18.74 -0.19 -3.66 16 4 C 0.32 3.86 7.49 -17.16 -0.13 3.73 16 5 C -0.13 -1.67 9.61 -38.84 -0.37 -2.04 16 6 C -0.05 -0.60 5.91 -104.67 -0.62 -1.21 16 7 C 0.56 7.81 7.76 -12.18 -0.09 7.72 16 8 O -0.53 -9.05 16.10 5.36 0.09 -8.97 16 9 N -0.71 -8.94 4.44 -54.65 -0.24 -9.18 16 10 C 0.15 2.02 2.16 -67.93 -0.15 1.87 16 11 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 12 C -0.16 -1.93 9.13 37.16 0.34 -1.59 16 13 C -0.11 -1.74 1.97 -90.50 -0.18 -1.92 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.10 -1.59 4.85 -26.69 -0.13 -1.72 16 16 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 17 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 18 N -0.59 -14.24 2.99 -172.33 -0.52 -14.76 16 19 C -0.25 -6.71 9.59 -15.06 -0.14 -6.85 16 20 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 23 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.15 3.07 5.56 -3.71 -0.02 3.05 16 28 C -0.18 -1.76 9.61 -39.03 -0.38 -2.13 16 29 C 0.14 1.31 11.17 -17.61 -0.20 1.12 16 30 N -0.53 -5.98 9.18 -13.38 -0.12 -6.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.15 1.92 7.74 -52.49 -0.41 1.51 16 37 H 0.40 4.33 6.57 -40.82 -0.27 4.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.80 6.40 -51.93 -0.33 0.46 16 41 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 50 H 0.14 1.10 6.53 -52.49 -0.34 0.76 16 51 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -31.86 407.02 -9.22 -41.08 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.24 Total: 3.09 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.73 Total: 1.37 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.26 Total: -55.25 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.10 Total: -12.63 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.86 -9.22 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025530296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.231 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds