Wall clock time and date at job start Wed Apr 1 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47148 * 2 1 4 4 C 1.35679 * 117.00206 * 180.02562 * 3 2 1 5 5 C 1.38893 * 119.62352 * 180.30355 * 4 3 2 6 6 C 1.39573 * 118.94579 * 180.27297 * 5 4 3 7 7 C 1.48170 * 120.89152 * 179.71313 * 6 5 4 8 8 O 1.21507 * 119.99880 * 359.71290 * 7 6 5 9 9 N 1.34774 * 119.99619 * 179.72096 * 7 6 5 10 10 C 1.46503 * 119.99785 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47033 * 34.99564 * 10 9 7 12 12 C 1.53001 * 109.46870 * 274.99746 * 10 9 7 13 13 C 1.52997 * 109.47279 * 154.99848 * 10 9 7 14 14 H 1.08999 * 109.49888 * 59.93555 * 13 10 9 15 15 C 1.53041 * 109.49872 * 179.97438 * 13 10 9 16 16 C 1.53042 * 109.53839 * 181.31723 * 15 13 10 17 17 C 1.53191 * 109.30938 * 298.63242 * 16 15 13 18 18 N 1.46927 * 108.77570 * 54.63926 * 17 16 15 19 19 C 1.36938 * 120.63083 * 126.41082 * 18 17 16 20 20 H 1.07991 * 119.99973 * 207.67297 * 19 18 17 21 21 C 1.38809 * 120.00009 * 27.67399 * 19 18 17 22 22 N 1.31621 * 120.00175 * 17.35300 * 21 19 18 23 23 Si 1.86797 * 119.99968 * 197.35578 * 21 19 18 24 24 H 1.48500 * 109.47054 * 90.00240 * 23 21 19 25 25 H 1.48506 * 109.47073 * 209.99907 * 23 21 19 26 26 H 1.48500 * 109.47361 * 329.99817 * 23 21 19 27 27 C 1.46924 * 118.73766 * 306.38351 * 18 17 16 28 28 C 1.39972 * 118.21802 * 359.43397 * 6 5 4 29 29 C 1.37980 * 119.12840 * 0.27831 * 28 6 5 30 30 N 1.31907 * 120.97786 * 0.02562 * 29 28 6 31 31 H 1.08991 * 109.47568 * 59.99368 * 1 2 3 32 32 H 1.08998 * 109.46931 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46874 * 299.99280 * 1 2 3 34 34 H 1.09001 * 109.46874 * 240.00720 * 2 1 3 35 35 H 1.08995 * 109.47297 * 120.00190 * 2 1 3 36 36 H 1.07998 * 120.53315 * 359.97438 * 5 4 3 37 37 H 0.97004 * 120.00726 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47144 * 299.99750 * 12 10 9 39 39 H 1.09000 * 109.46969 * 60.00047 * 12 10 9 40 40 H 1.09004 * 109.47350 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.45908 * 301.33492 * 15 13 10 42 42 H 1.08999 * 109.46004 * 61.31019 * 15 13 10 43 43 H 1.09004 * 109.49865 * 58.58479 * 16 15 13 44 44 H 1.09001 * 109.49350 * 178.64818 * 16 15 13 45 45 H 1.09000 * 109.58176 * 174.42592 * 17 16 15 46 46 H 1.08997 * 109.58929 * 294.84680 * 17 16 15 47 47 H 0.96997 * 120.00152 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.58833 * 293.82936 * 27 18 17 49 49 H 1.08998 * 109.58418 * 173.39779 * 27 18 17 50 50 H 1.07996 * 120.43489 * 180.25536 * 28 6 5 51 51 H 1.08001 * 119.50225 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5251 -0.0005 5 6 3.8739 2.8120 0.0058 6 6 5.2596 2.9786 -0.0006 7 6 5.8631 4.3318 -0.0006 8 8 5.1496 5.3153 -0.0002 9 7 7.2036 4.4717 -0.0012 10 6 7.8004 5.8097 -0.0018 11 1 7.1798 6.4846 0.5877 12 6 7.8927 6.3263 -1.4390 13 6 9.2023 5.7431 0.6073 14 1 9.8230 5.0674 0.0187 15 6 9.8266 7.1404 0.6064 16 6 11.2415 7.0692 1.1853 17 6 11.1724 6.5715 2.6324 18 7 10.4445 5.2954 2.6593 19 6 10.9991 4.1881 3.2437 20 1 10.7219 3.2016 2.9027 21 6 11.9175 4.3336 4.2743 22 7 12.0065 5.4771 4.9199 23 14 13.0271 2.9065 4.7449 24 1 14.2809 2.9719 3.9518 25 1 13.3518 2.9881 6.1917 26 1 12.3308 1.6250 4.4654 27 6 9.1101 5.2303 2.0479 28 6 6.0639 1.8330 -0.0011 29 6 5.4634 0.5908 -0.0011 30 7 4.1497 0.4717 -0.0012 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.2183 3.6703 0.0108 37 1 7.7733 3.6866 -0.0013 38 1 8.5133 5.6514 -2.0285 39 1 6.8939 6.3738 -1.8728 40 1 8.3363 7.3220 -1.4394 41 1 9.8708 7.5177 -0.4152 42 1 9.2188 7.8100 1.2149 43 1 11.8431 6.3805 0.5920 44 1 11.6943 8.0605 1.1622 45 1 12.1817 6.4246 3.0169 46 1 10.6484 7.3041 3.2462 47 1 12.6480 5.5786 5.6403 48 1 8.4180 5.8536 2.6140 49 1 8.7588 4.1985 2.0467 50 1 7.1403 1.9204 -0.0019 51 1 6.0782 -0.2972 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025530296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:39 Heat of formation + Delta-G solvation = -47.422038 kcal Electronic energy + Delta-G solvation = -30630.283989 eV Core-core repulsion = 26529.380835 eV Total energy + Delta-G solvation = -4100.903154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97453 -40.90478 -39.50978 -38.83198 -36.76922 -34.79976 -33.88869 -33.10940 -32.45614 -31.99277 -30.87228 -29.87195 -27.17268 -26.39120 -24.83483 -24.41126 -23.76068 -23.56800 -22.11704 -21.60520 -20.79584 -19.68056 -18.65278 -18.36595 -17.54352 -17.34983 -16.96174 -16.85728 -16.62512 -16.15200 -15.86681 -15.50818 -15.35860 -15.04355 -14.96129 -14.86680 -14.82440 -14.66595 -14.12352 -14.02053 -13.72292 -13.45945 -13.35480 -13.23917 -13.02462 -12.99709 -12.76274 -12.61469 -12.48998 -12.27512 -12.19357 -11.93922 -11.76027 -11.74630 -11.52588 -11.43952 -11.19069 -11.08937 -11.03602 -10.72028 -10.51525 -10.13993 -9.62661 -8.66482 -7.84774 -5.30572 -0.43526 0.05252 1.48752 1.49965 1.58462 1.73094 1.77172 2.18092 2.52586 2.73219 3.23127 3.29653 3.45221 3.56296 3.85136 3.91963 3.93543 4.01314 4.03678 4.06998 4.08448 4.17533 4.36659 4.44813 4.45136 4.51011 4.59148 4.66627 4.70846 4.78734 4.81867 4.86519 4.89319 4.94090 4.94389 4.97317 5.06602 5.12789 5.18304 5.24028 5.28512 5.29791 5.35533 5.46219 5.51913 5.60011 5.69301 5.80593 6.16240 6.39452 6.43108 6.68741 7.05759 7.16580 7.88165 8.40386 9.21400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002515 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.702419 B =11131.832934 C =12926.280095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.320 6.320 4 C 0.309 3.691 5 C -0.151 4.151 6 C -0.060 4.060 7 C 0.559 3.441 8 O -0.568 6.568 9 N -0.698 5.698 10 C 0.154 3.846 11 H 0.066 0.934 12 C -0.154 4.154 13 C -0.093 4.093 14 H 0.085 0.915 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.608 5.608 19 C -0.257 4.257 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.967 3.033 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.264 1.264 27 C 0.153 3.847 28 C -0.170 4.170 29 C 0.143 3.857 30 N -0.535 5.535 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.052 0.948 46 H -0.013 1.013 47 H 0.248 0.752 48 H -0.006 1.006 49 H 0.057 0.943 50 H 0.171 0.829 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 -9.272 -15.810 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.228 6.228 4 C 0.131 3.869 5 C -0.173 4.173 6 C -0.071 4.071 7 C 0.346 3.654 8 O -0.448 6.448 9 N -0.350 5.350 10 C 0.050 3.950 11 H 0.085 0.915 12 C -0.212 4.212 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.091 0.909 21 C -0.251 4.251 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.188 1.188 27 C 0.028 3.972 28 C -0.190 4.190 29 C -0.013 4.013 30 N -0.259 5.259 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.005 0.995 47 H 0.057 0.943 48 H 0.012 0.988 49 H 0.075 0.925 50 H 0.188 0.812 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.329 -9.174 -15.670 23.763 hybrid contribution 1.197 0.025 1.086 1.617 sum -14.132 -9.150 -14.583 22.273 Atomic orbital electron populations 1.21850 0.91217 1.04326 1.03249 1.22842 0.96173 0.79726 1.02592 1.86242 1.16358 1.32521 1.87635 1.19678 0.84698 0.89468 0.93057 1.21099 0.94967 0.96473 1.04781 1.20105 0.93358 0.93819 0.99773 1.18292 0.82748 0.88216 0.76151 1.90755 1.62008 1.40779 1.51239 1.45910 1.05635 1.10391 1.73023 1.20968 0.93229 0.83103 0.97733 0.91542 1.22141 1.01940 1.02623 0.94500 1.21755 0.94288 0.98791 0.96559 0.89704 1.21452 0.95397 0.95322 1.01450 1.22000 0.97264 1.00439 0.97161 1.20641 0.96363 0.85552 0.92831 1.44320 1.14575 1.08264 1.65916 1.19562 1.20803 0.87329 1.11029 0.90872 1.25830 1.03540 0.99369 0.96316 1.70212 1.37817 1.26945 1.23491 0.85270 0.79271 0.79742 0.76205 1.21180 1.22828 1.18849 1.20987 0.86016 0.98366 0.91866 1.22508 1.02557 0.91867 1.02105 1.23047 0.88501 0.98505 0.91229 1.67294 1.07769 1.32926 1.17951 0.91625 0.88008 0.91877 0.91286 0.91650 0.84062 0.74878 0.90832 0.93329 0.89944 0.89303 0.93324 0.92402 0.91385 0.92996 0.99455 0.94315 0.98765 0.92496 0.81206 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.06 1.00 6.03 71.98 0.43 1.44 16 3 O -0.32 -7.32 10.11 -89.96 -0.91 -8.23 16 4 C 0.31 7.41 7.49 84.80 0.63 8.05 16 5 C -0.15 -3.85 9.61 22.75 0.22 -3.63 16 6 C -0.06 -1.41 5.91 -19.90 -0.12 -1.53 16 7 C 0.56 15.35 7.76 86.88 0.67 16.02 16 8 O -0.57 -19.77 16.10 -3.74 -0.06 -19.83 16 9 N -0.70 -16.43 4.44 -445.11 -1.98 -18.41 16 10 C 0.15 3.96 2.16 44.99 0.10 4.05 16 11 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 12 C -0.15 -3.21 9.13 71.98 0.66 -2.55 16 13 C -0.09 -2.72 1.97 -10.71 -0.02 -2.74 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.10 -2.85 4.85 30.62 0.15 -2.70 16 16 C -0.13 -4.53 6.08 30.67 0.19 -4.34 16 17 C 0.17 8.15 5.31 86.36 0.46 8.60 16 18 N -0.61 -29.37 2.99 -699.12 -2.09 -31.47 16 19 C -0.26 -13.56 9.59 84.03 0.81 -12.76 16 20 H 0.07 3.66 7.89 -2.92 -0.02 3.64 16 21 C -0.06 -3.04 4.91 84.86 0.42 -2.63 16 22 N -0.94 -55.44 11.19 21.65 0.24 -55.20 16 23 Si 0.97 43.77 29.59 68.60 2.03 45.80 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 27 C 0.15 6.00 5.56 86.36 0.48 6.48 16 28 C -0.17 -2.91 9.61 22.63 0.22 -2.69 16 29 C 0.14 2.30 11.17 84.62 0.94 3.24 16 30 N -0.53 -11.27 9.18 -309.15 -2.84 -14.11 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.14 3.80 7.74 -2.91 -0.02 3.78 16 37 H 0.41 7.72 6.57 -92.71 -0.61 7.11 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.54 6.40 -2.38 -0.02 1.52 16 41 H 0.09 1.99 6.36 -2.39 -0.02 1.98 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 46 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 49 H 0.06 2.11 7.45 -2.39 -0.02 2.09 16 50 H 0.17 1.94 6.53 -2.91 -0.02 1.92 16 51 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.91 407.02 1.69 -70.22 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.32 Total: 19.84 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.98 Total: 11.38 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -6.67 Total: -119.18 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.97 Total: -28.06 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.91 1.69 -70.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025530296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.801 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds