Wall clock time and date at job start Wed Apr 1 2020 05:19:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42903 * 109.47148 * 2 1
4 4 C 1.35679 * 117.00206 * 180.02562 * 3 2 1
5 5 C 1.38893 * 119.62352 * 180.30355 * 4 3 2
6 6 C 1.39573 * 118.94579 * 180.27297 * 5 4 3
7 7 C 1.48170 * 120.89152 * 179.71313 * 6 5 4
8 8 O 1.21507 * 119.99880 * 359.71290 * 7 6 5
9 9 N 1.34774 * 119.99619 * 179.72096 * 7 6 5
10 10 C 1.46503 * 119.99785 * 179.97438 * 9 7 6
11 11 H 1.08998 * 109.47033 * 34.99564 * 10 9 7
12 12 C 1.53001 * 109.46870 * 274.99746 * 10 9 7
13 13 C 1.52997 * 109.47279 * 154.99848 * 10 9 7
14 14 H 1.08999 * 109.49888 * 59.93555 * 13 10 9
15 15 C 1.53041 * 109.49872 * 179.97438 * 13 10 9
16 16 C 1.53042 * 109.53839 * 181.31723 * 15 13 10
17 17 C 1.53191 * 109.30938 * 298.63242 * 16 15 13
18 18 N 1.46927 * 108.77570 * 54.63926 * 17 16 15
19 19 C 1.36938 * 120.63083 * 126.41082 * 18 17 16
20 20 H 1.07991 * 119.99973 * 207.67297 * 19 18 17
21 21 C 1.38809 * 120.00009 * 27.67399 * 19 18 17
22 22 N 1.31621 * 120.00175 * 17.35300 * 21 19 18
23 23 Si 1.86797 * 119.99968 * 197.35578 * 21 19 18
24 24 H 1.48500 * 109.47054 * 90.00240 * 23 21 19
25 25 H 1.48506 * 109.47073 * 209.99907 * 23 21 19
26 26 H 1.48500 * 109.47361 * 329.99817 * 23 21 19
27 27 C 1.46924 * 118.73766 * 306.38351 * 18 17 16
28 28 C 1.39972 * 118.21802 * 359.43397 * 6 5 4
29 29 C 1.37980 * 119.12840 * 0.27831 * 28 6 5
30 30 N 1.31907 * 120.97786 * 0.02562 * 29 28 6
31 31 H 1.08991 * 109.47568 * 59.99368 * 1 2 3
32 32 H 1.08998 * 109.46931 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46874 * 299.99280 * 1 2 3
34 34 H 1.09001 * 109.46874 * 240.00720 * 2 1 3
35 35 H 1.08995 * 109.47297 * 120.00190 * 2 1 3
36 36 H 1.07998 * 120.53315 * 359.97438 * 5 4 3
37 37 H 0.97004 * 120.00726 * 359.97438 * 9 7 6
38 38 H 1.08998 * 109.47144 * 299.99750 * 12 10 9
39 39 H 1.09000 * 109.46969 * 60.00047 * 12 10 9
40 40 H 1.09004 * 109.47350 * 179.97438 * 12 10 9
41 41 H 1.09002 * 109.45908 * 301.33492 * 15 13 10
42 42 H 1.08999 * 109.46004 * 61.31019 * 15 13 10
43 43 H 1.09004 * 109.49865 * 58.58479 * 16 15 13
44 44 H 1.09001 * 109.49350 * 178.64818 * 16 15 13
45 45 H 1.09000 * 109.58176 * 174.42592 * 17 16 15
46 46 H 1.08997 * 109.58929 * 294.84680 * 17 16 15
47 47 H 0.96997 * 120.00152 * 179.97438 * 22 21 19
48 48 H 1.08993 * 109.58833 * 293.82936 * 27 18 17
49 49 H 1.08998 * 109.58418 * 173.39779 * 27 18 17
50 50 H 1.07996 * 120.43489 * 180.25536 * 28 6 5
51 51 H 1.08001 * 119.50225 * 179.97438 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3515 1.5251 -0.0005
5 6 3.8739 2.8120 0.0058
6 6 5.2596 2.9786 -0.0006
7 6 5.8631 4.3318 -0.0006
8 8 5.1496 5.3153 -0.0002
9 7 7.2036 4.4717 -0.0012
10 6 7.8004 5.8097 -0.0018
11 1 7.1798 6.4846 0.5877
12 6 7.8927 6.3263 -1.4390
13 6 9.2023 5.7431 0.6073
14 1 9.8230 5.0674 0.0187
15 6 9.8266 7.1404 0.6064
16 6 11.2415 7.0692 1.1853
17 6 11.1724 6.5715 2.6324
18 7 10.4445 5.2954 2.6593
19 6 10.9991 4.1881 3.2437
20 1 10.7219 3.2016 2.9027
21 6 11.9175 4.3336 4.2743
22 7 12.0065 5.4771 4.9199
23 14 13.0271 2.9065 4.7449
24 1 14.2809 2.9719 3.9518
25 1 13.3518 2.9881 6.1917
26 1 12.3308 1.6250 4.4654
27 6 9.1101 5.2303 2.0479
28 6 6.0639 1.8330 -0.0011
29 6 5.4634 0.5908 -0.0011
30 7 4.1497 0.4717 -0.0012
31 1 -0.3634 0.5139 -0.8898
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5137 0.8901
34 1 1.8933 -0.5137 -0.8901
35 1 1.8934 -0.5138 0.8899
36 1 3.2183 3.6703 0.0108
37 1 7.7733 3.6866 -0.0013
38 1 8.5133 5.6514 -2.0285
39 1 6.8939 6.3738 -1.8728
40 1 8.3363 7.3220 -1.4394
41 1 9.8708 7.5177 -0.4152
42 1 9.2188 7.8100 1.2149
43 1 11.8431 6.3805 0.5920
44 1 11.6943 8.0605 1.1622
45 1 12.1817 6.4246 3.0169
46 1 10.6484 7.3041 3.2462
47 1 12.6480 5.5786 5.6403
48 1 8.4180 5.8536 2.6140
49 1 8.7588 4.1985 2.0467
50 1 7.1403 1.9204 -0.0019
51 1 6.0782 -0.2972 -0.0019
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025530296.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:39
Heat of formation + Delta-G solvation = -47.422038 kcal
Electronic energy + Delta-G solvation = -30630.283989 eV
Core-core repulsion = 26529.380835 eV
Total energy + Delta-G solvation = -4100.903154 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.97453 -40.90478 -39.50978 -38.83198 -36.76922 -34.79976 -33.88869 -33.10940
-32.45614 -31.99277 -30.87228 -29.87195 -27.17268 -26.39120 -24.83483 -24.41126
-23.76068 -23.56800 -22.11704 -21.60520 -20.79584 -19.68056 -18.65278 -18.36595
-17.54352 -17.34983 -16.96174 -16.85728 -16.62512 -16.15200 -15.86681 -15.50818
-15.35860 -15.04355 -14.96129 -14.86680 -14.82440 -14.66595 -14.12352 -14.02053
-13.72292 -13.45945 -13.35480 -13.23917 -13.02462 -12.99709 -12.76274 -12.61469
-12.48998 -12.27512 -12.19357 -11.93922 -11.76027 -11.74630 -11.52588 -11.43952
-11.19069 -11.08937 -11.03602 -10.72028 -10.51525 -10.13993 -9.62661 -8.66482
-7.84774 -5.30572 -0.43526 0.05252 1.48752 1.49965 1.58462 1.73094
1.77172 2.18092 2.52586 2.73219 3.23127 3.29653 3.45221 3.56296
3.85136 3.91963 3.93543 4.01314 4.03678 4.06998 4.08448 4.17533
4.36659 4.44813 4.45136 4.51011 4.59148 4.66627 4.70846 4.78734
4.81867 4.86519 4.89319 4.94090 4.94389 4.97317 5.06602 5.12789
5.18304 5.24028 5.28512 5.29791 5.35533 5.46219 5.51913 5.60011
5.69301 5.80593 6.16240 6.39452 6.43108 6.68741 7.05759 7.16580
7.88165 8.40386 9.21400
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011680 B = 0.002515 C = 0.002166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2396.702419 B =11131.832934 C =12926.280095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.061 3.939
3 O -0.320 6.320
4 C 0.309 3.691
5 C -0.151 4.151
6 C -0.060 4.060
7 C 0.559 3.441
8 O -0.568 6.568
9 N -0.698 5.698
10 C 0.154 3.846
11 H 0.066 0.934
12 C -0.154 4.154
13 C -0.093 4.093
14 H 0.085 0.915
15 C -0.098 4.098
16 C -0.130 4.130
17 C 0.172 3.828
18 N -0.608 5.608
19 C -0.257 4.257
20 H 0.074 0.926
21 C -0.055 4.055
22 N -0.938 5.938
23 Si 0.967 3.033
24 H -0.285 1.285
25 H -0.301 1.301
26 H -0.264 1.264
27 C 0.153 3.847
28 C -0.170 4.170
29 C 0.143 3.857
30 N -0.535 5.535
31 H 0.065 0.935
32 H 0.101 0.899
33 H 0.062 0.938
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.142 0.858
37 H 0.413 0.587
38 H 0.073 0.927
39 H 0.048 0.952
40 H 0.082 0.918
41 H 0.089 0.911
42 H 0.048 0.952
43 H 0.057 0.943
44 H 0.068 0.932
45 H 0.052 0.948
46 H -0.013 1.013
47 H 0.248 0.752
48 H -0.006 1.006
49 H 0.057 0.943
50 H 0.171 0.829
51 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.321 -9.272 -15.810 23.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.013 4.013
3 O -0.228 6.228
4 C 0.131 3.869
5 C -0.173 4.173
6 C -0.071 4.071
7 C 0.346 3.654
8 O -0.448 6.448
9 N -0.350 5.350
10 C 0.050 3.950
11 H 0.085 0.915
12 C -0.212 4.212
13 C -0.114 4.114
14 H 0.103 0.897
15 C -0.136 4.136
16 C -0.169 4.169
17 C 0.046 3.954
18 N -0.331 5.331
19 C -0.387 4.387
20 H 0.091 0.909
21 C -0.251 4.251
22 N -0.585 5.585
23 Si 0.795 3.205
24 H -0.212 1.212
25 H -0.228 1.228
26 H -0.188 1.188
27 C 0.028 3.972
28 C -0.190 4.190
29 C -0.013 4.013
30 N -0.259 5.259
31 H 0.084 0.916
32 H 0.120 0.880
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.159 0.841
37 H 0.251 0.749
38 H 0.092 0.908
39 H 0.067 0.933
40 H 0.101 0.899
41 H 0.107 0.893
42 H 0.067 0.933
43 H 0.076 0.924
44 H 0.086 0.914
45 H 0.070 0.930
46 H 0.005 0.995
47 H 0.057 0.943
48 H 0.012 0.988
49 H 0.075 0.925
50 H 0.188 0.812
51 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -15.329 -9.174 -15.670 23.763
hybrid contribution 1.197 0.025 1.086 1.617
sum -14.132 -9.150 -14.583 22.273
Atomic orbital electron populations
1.21850 0.91217 1.04326 1.03249 1.22842 0.96173 0.79726 1.02592
1.86242 1.16358 1.32521 1.87635 1.19678 0.84698 0.89468 0.93057
1.21099 0.94967 0.96473 1.04781 1.20105 0.93358 0.93819 0.99773
1.18292 0.82748 0.88216 0.76151 1.90755 1.62008 1.40779 1.51239
1.45910 1.05635 1.10391 1.73023 1.20968 0.93229 0.83103 0.97733
0.91542 1.22141 1.01940 1.02623 0.94500 1.21755 0.94288 0.98791
0.96559 0.89704 1.21452 0.95397 0.95322 1.01450 1.22000 0.97264
1.00439 0.97161 1.20641 0.96363 0.85552 0.92831 1.44320 1.14575
1.08264 1.65916 1.19562 1.20803 0.87329 1.11029 0.90872 1.25830
1.03540 0.99369 0.96316 1.70212 1.37817 1.26945 1.23491 0.85270
0.79271 0.79742 0.76205 1.21180 1.22828 1.18849 1.20987 0.86016
0.98366 0.91866 1.22508 1.02557 0.91867 1.02105 1.23047 0.88501
0.98505 0.91229 1.67294 1.07769 1.32926 1.17951 0.91625 0.88008
0.91877 0.91286 0.91650 0.84062 0.74878 0.90832 0.93329 0.89944
0.89303 0.93324 0.92402 0.91385 0.92996 0.99455 0.94315 0.98765
0.92496 0.81206 0.77930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16
2 C 0.06 1.00 6.03 71.98 0.43 1.44 16
3 O -0.32 -7.32 10.11 -89.96 -0.91 -8.23 16
4 C 0.31 7.41 7.49 84.80 0.63 8.05 16
5 C -0.15 -3.85 9.61 22.75 0.22 -3.63 16
6 C -0.06 -1.41 5.91 -19.90 -0.12 -1.53 16
7 C 0.56 15.35 7.76 86.88 0.67 16.02 16
8 O -0.57 -19.77 16.10 -3.74 -0.06 -19.83 16
9 N -0.70 -16.43 4.44 -445.11 -1.98 -18.41 16
10 C 0.15 3.96 2.16 44.99 0.10 4.05 16
11 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16
12 C -0.15 -3.21 9.13 71.98 0.66 -2.55 16
13 C -0.09 -2.72 1.97 -10.71 -0.02 -2.74 16
14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
15 C -0.10 -2.85 4.85 30.62 0.15 -2.70 16
16 C -0.13 -4.53 6.08 30.67 0.19 -4.34 16
17 C 0.17 8.15 5.31 86.36 0.46 8.60 16
18 N -0.61 -29.37 2.99 -699.12 -2.09 -31.47 16
19 C -0.26 -13.56 9.59 84.03 0.81 -12.76 16
20 H 0.07 3.66 7.89 -2.92 -0.02 3.64 16
21 C -0.06 -3.04 4.91 84.86 0.42 -2.63 16
22 N -0.94 -55.44 11.19 21.65 0.24 -55.20 16
23 Si 0.97 43.77 29.59 68.60 2.03 45.80 16
24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16
26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16
27 C 0.15 6.00 5.56 86.36 0.48 6.48 16
28 C -0.17 -2.91 9.61 22.63 0.22 -2.69 16
29 C 0.14 2.30 11.17 84.62 0.94 3.24 16
30 N -0.53 -11.27 9.18 -309.15 -2.84 -14.11 16
31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
34 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16
35 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16
36 H 0.14 3.80 7.74 -2.91 -0.02 3.78 16
37 H 0.41 7.72 6.57 -92.71 -0.61 7.11 16
38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16
39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.08 1.54 6.40 -2.38 -0.02 1.52 16
41 H 0.09 1.99 6.36 -2.39 -0.02 1.98 16
42 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16
43 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16
44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
45 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16
46 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16
48 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16
49 H 0.06 2.11 7.45 -2.39 -0.02 2.09 16
50 H 0.17 1.94 6.53 -2.91 -0.02 1.92 16
51 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16
Total: -1.00 -71.91 407.02 1.69 -70.22
By element:
Atomic # 1 Polarization: 19.52 SS G_CDS: 0.32 Total: 19.84 kcal
Atomic # 6 Polarization: 4.40 SS G_CDS: 6.98 Total: 11.38 kcal
Atomic # 7 Polarization: -112.52 SS G_CDS: -6.67 Total: -119.18 kcal
Atomic # 8 Polarization: -27.09 SS G_CDS: -0.97 Total: -28.06 kcal
Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal
Total: -71.91 1.69 -70.22 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025530296.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.801 kcal
(2) G-P(sol) polarization free energy of solvation -71.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds