Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47298 * 2 1 4 4 C 1.35427 * 116.99936 * 179.97438 * 3 2 1 5 5 N 1.32232 * 119.79884 * 0.02562 * 4 3 2 6 6 C 1.31887 * 121.80164 * 180.02562 * 5 4 3 7 7 C 1.38360 * 121.18139 * 359.96987 * 6 5 4 8 8 C 1.38334 * 119.45558 * 359.76905 * 7 6 5 9 9 C 1.39992 * 118.35408 * 0.47504 * 8 7 6 10 10 C 1.47524 * 120.59830 * 179.80086 * 9 8 7 11 11 O 1.21587 * 119.99854 * 179.72431 * 10 9 8 12 12 N 1.34777 * 119.99815 * 359.71841 * 10 9 8 13 13 C 1.46500 * 119.99654 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47312 * 34.99888 * 13 12 10 15 15 C 1.53009 * 109.46990 * 275.00298 * 13 12 10 16 16 C 1.53005 * 109.47346 * 155.00477 * 13 12 10 17 17 H 1.09000 * 109.51848 * 305.07648 * 16 13 12 18 18 C 1.53036 * 109.49940 * 184.99913 * 16 13 12 19 19 C 1.53037 * 109.53839 * 178.67965 * 18 16 13 20 20 C 1.53196 * 109.31160 * 61.36690 * 19 18 16 21 21 N 1.46932 * 108.77447 * 305.36348 * 20 19 18 22 22 C 1.36933 * 120.63227 * 233.58897 * 21 20 19 23 23 H 1.08000 * 120.00106 * 151.83446 * 22 21 20 24 24 C 1.38815 * 119.99801 * 331.83419 * 22 21 20 25 25 N 1.31612 * 120.00090 * 343.07689 * 24 22 21 26 26 Si 1.86795 * 119.99858 * 163.07634 * 24 22 21 27 27 H 1.48497 * 109.47398 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47290 * 120.00195 * 26 24 22 29 29 H 1.48499 * 109.47370 * 239.99780 * 26 24 22 30 30 C 1.46924 * 118.73801 * 53.60831 * 21 20 19 31 31 H 1.08999 * 109.46693 * 60.00374 * 1 2 3 32 32 H 1.08998 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47191 * 300.00479 * 1 2 3 34 34 H 1.09000 * 109.47191 * 239.99521 * 2 1 3 35 35 H 1.09006 * 109.46931 * 119.99920 * 2 1 3 36 36 H 1.07996 * 119.40950 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.26947 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.82320 * 180.25470 * 8 7 6 39 39 H 0.97000 * 120.00666 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46771 * 299.99722 * 15 13 12 41 41 H 1.08993 * 109.47065 * 60.00173 * 15 13 12 42 42 H 1.09005 * 109.47076 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.45790 * 298.70122 * 18 16 13 44 44 H 1.09000 * 109.45981 * 58.67040 * 18 16 13 45 45 H 1.08996 * 109.49853 * 181.31152 * 19 18 16 46 46 H 1.09000 * 109.49859 * 301.38163 * 19 18 16 47 47 H 1.08995 * 109.58928 * 65.14840 * 20 19 18 48 48 H 1.09000 * 109.58658 * 185.58063 * 20 19 18 49 49 H 0.97004 * 120.00272 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.59213 * 186.60405 * 30 21 20 51 51 H 1.09005 * 109.58716 * 66.17778 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6001 0.0015 7 6 6.0626 1.8473 0.0020 8 6 5.2714 2.9820 -0.0034 9 6 3.8806 2.8228 0.0010 10 6 2.9901 3.9989 0.0000 11 8 1.7836 3.8480 -0.0013 12 7 3.5140 5.2407 0.0005 13 6 2.6296 6.4087 0.0001 14 1 1.7388 6.1902 0.5888 15 6 2.2225 6.7396 -1.4373 16 6 3.3636 7.6045 0.6103 17 1 3.7327 7.3385 1.6008 18 6 2.4024 8.7898 0.7248 19 6 3.1265 9.9761 1.3653 20 6 4.3028 10.3917 0.4762 21 7 5.1561 9.2187 0.2420 22 6 6.4978 9.2669 0.5117 23 1 7.0273 8.3650 0.7810 24 6 7.1773 10.4752 0.4389 25 7 6.6404 11.4950 -0.1967 26 14 8.8538 10.6537 1.2430 27 1 9.2320 9.3714 1.8894 28 1 9.8627 11.0051 0.2116 29 1 8.7995 11.7269 2.2680 30 6 4.5426 7.9931 -0.2874 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 6.0819 -0.2853 0.0019 37 1 7.1391 1.9341 0.0025 38 1 5.7157 3.9664 -0.0072 39 1 4.4764 5.3612 0.0012 40 1 3.1134 6.9582 -2.0260 41 1 1.6996 5.8878 -1.8720 42 1 1.5648 7.6089 -1.4377 43 1 2.0528 9.0710 -0.2686 44 1 1.5502 8.5078 1.3432 45 1 2.4349 10.8122 1.4679 46 1 3.4974 9.6879 2.3489 47 1 3.9268 10.7658 -0.4760 48 1 4.8805 11.1701 0.9747 49 1 7.1154 12.3392 -0.2479 50 1 5.2783 7.1890 -0.2928 51 1 4.1861 8.1718 -1.3018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025608142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = -23.155670 kcal Electronic energy + Delta-G solvation = -31242.268487 eV Core-core repulsion = 27142.417602 eV Total energy + Delta-G solvation = -4099.850885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.08850 -39.50610 -38.21134 -37.86626 -35.13967 -33.40211 -32.67807 -32.24086 -30.94598 -30.46997 -30.03075 -28.04956 -25.32550 -25.14264 -24.41256 -23.36475 -22.49901 -22.18654 -20.92892 -20.12195 -18.94313 -18.54776 -17.61254 -17.11741 -16.64084 -16.51114 -15.61527 -15.33140 -14.94502 -14.88190 -14.52830 -14.41067 -14.08252 -13.92385 -13.88592 -13.49830 -13.27615 -13.07669 -12.85789 -12.61718 -12.56503 -12.45304 -12.34141 -12.25709 -11.79697 -11.69797 -11.59616 -11.01678 -10.97345 -10.93629 -10.56975 -10.47318 -10.24276 -10.21598 -10.17509 -10.09593 -9.89438 -9.72832 -9.51877 -9.40077 -8.92418 -8.68843 -8.49138 -6.68316 -5.81830 -3.24689 0.47217 0.99930 2.79039 2.88605 3.21135 3.33703 3.41905 3.43324 3.67450 3.99719 4.45085 4.49456 4.58457 4.71342 4.80987 4.84168 4.95016 5.04034 5.15119 5.22508 5.25526 5.39037 5.43950 5.46083 5.57376 5.58623 5.64486 5.70519 5.73031 5.79196 5.87621 5.89011 6.03612 6.08001 6.16698 6.24013 6.26948 6.35986 6.51102 6.57983 6.67188 6.71134 6.79300 6.87188 6.98324 7.05900 7.39101 7.47274 7.65382 7.66667 7.75757 8.34739 8.41778 9.17971 9.81713 10.38741 11.26283 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002699 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.773513 B =10369.860893 C =12048.915135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.372 3.628 5 N -0.548 5.548 6 C 0.163 3.837 7 C -0.219 4.219 8 C -0.007 4.007 9 C -0.208 4.208 10 C 0.563 3.437 11 O -0.521 6.521 12 N -0.718 5.718 13 C 0.152 3.848 14 H 0.083 0.917 15 C -0.165 4.165 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.152 3.848 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.164 0.836 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.085 0.915 49 H 0.253 0.747 50 H 0.045 0.955 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -20.171 0.083 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.192 3.808 5 N -0.273 5.273 6 C 0.006 3.994 7 C -0.240 4.240 8 C -0.033 4.033 9 C -0.214 4.214 10 C 0.349 3.651 11 O -0.398 6.398 12 N -0.370 5.370 13 C 0.048 3.952 14 H 0.101 0.899 15 C -0.223 4.223 16 C -0.134 4.134 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.025 3.975 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.234 0.766 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.939 -20.733 0.052 22.201 hybrid contribution 1.963 0.817 0.395 2.162 sum -5.976 -19.916 0.447 20.798 Atomic orbital electron populations 1.21784 0.92827 1.02485 1.03777 1.22683 0.95208 0.81332 1.02207 1.86537 1.15538 1.29731 1.85540 1.19814 0.84668 0.88452 0.87871 1.67486 1.06655 1.32421 1.20723 1.22654 0.89149 0.97673 0.89914 1.21959 1.01911 0.92868 1.07232 1.21755 0.91239 1.00327 0.89972 1.20117 0.94312 0.92553 1.14434 1.17745 0.87739 0.82609 0.77057 1.90809 1.14126 1.85847 1.48984 1.46074 1.10670 1.05238 1.75064 1.21026 0.93102 0.84020 0.97085 0.89940 1.22262 1.02005 1.01501 0.96515 1.21960 0.97680 0.93182 1.00578 0.90988 1.21416 0.96672 0.95214 1.00530 1.22179 0.99088 0.96542 1.00344 1.20789 0.89096 0.90277 0.95428 1.44028 1.04586 1.08792 1.73942 1.19177 0.84321 0.94648 1.40096 0.91802 1.25040 0.97770 0.97620 0.99177 1.70041 1.38766 1.03113 1.42565 0.86258 0.84020 0.77719 0.78960 1.20291 1.21750 1.21578 1.20992 0.92227 0.90177 0.94094 0.91483 0.90501 0.91489 0.91703 0.91707 0.81918 0.83723 0.83499 0.76565 0.91637 0.92848 0.91415 0.92218 0.93515 0.93237 0.92826 0.96437 0.89635 0.93675 0.93633 0.95599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.64 6.03 37.16 0.22 0.86 16 3 O -0.27 -3.83 8.22 -39.75 -0.33 -4.15 16 4 C 0.37 5.03 7.51 -16.61 -0.12 4.90 16 5 N -0.55 -6.31 9.21 -12.98 -0.12 -6.43 16 6 C 0.16 1.40 11.17 -17.48 -0.20 1.21 16 7 C -0.22 -1.80 10.09 -39.50 -0.40 -2.19 16 8 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 9 C -0.21 -2.73 5.90 -104.69 -0.62 -3.35 16 10 C 0.56 8.52 7.74 -12.48 -0.10 8.43 16 11 O -0.52 -9.50 14.85 -16.48 -0.24 -9.74 16 12 N -0.72 -9.91 4.97 -54.85 -0.27 -10.18 16 13 C 0.15 2.24 2.35 -67.92 -0.16 2.08 16 14 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 15 C -0.16 -2.35 8.76 37.16 0.33 -2.03 16 16 C -0.11 -1.85 2.27 -90.50 -0.21 -2.06 16 17 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.10 -1.64 4.89 -26.69 -0.13 -1.77 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 20 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 21 N -0.59 -14.11 2.99 -172.32 -0.52 -14.63 16 22 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 23 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 24 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.58 11.20 55.49 0.62 -24.95 16 26 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.15 2.92 5.26 -3.71 -0.02 2.90 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.15 1.22 6.52 -52.48 -0.34 0.88 16 39 H 0.40 4.90 5.38 -40.82 -0.22 4.68 16 40 H 0.06 0.95 6.23 -51.93 -0.32 0.63 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.92 6.59 -51.93 -0.34 0.58 16 43 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.05 0.83 6.75 -51.93 -0.35 0.48 16 51 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -32.45 399.70 -9.65 -42.10 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.99 Total: 3.97 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.80 Total: 1.92 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.29 Total: -56.20 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.57 Total: -13.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.45 -9.65 -42.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025608142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.948 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds