Wall clock time and date at job start Wed Apr 1 2020 05:19:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42903 * 109.47298 * 2 1
4 4 C 1.35427 * 116.99936 * 179.97438 * 3 2 1
5 5 N 1.32232 * 119.79884 * 0.02562 * 4 3 2
6 6 C 1.31887 * 121.80164 * 180.02562 * 5 4 3
7 7 C 1.38360 * 121.18139 * 359.96987 * 6 5 4
8 8 C 1.38334 * 119.45558 * 359.76905 * 7 6 5
9 9 C 1.39992 * 118.35408 * 0.47504 * 8 7 6
10 10 C 1.47524 * 120.59830 * 179.80086 * 9 8 7
11 11 O 1.21587 * 119.99854 * 179.72431 * 10 9 8
12 12 N 1.34777 * 119.99815 * 359.71841 * 10 9 8
13 13 C 1.46500 * 119.99654 * 180.02562 * 12 10 9
14 14 H 1.08991 * 109.47312 * 34.99888 * 13 12 10
15 15 C 1.53009 * 109.46990 * 275.00298 * 13 12 10
16 16 C 1.53005 * 109.47346 * 155.00477 * 13 12 10
17 17 H 1.09000 * 109.51848 * 305.07648 * 16 13 12
18 18 C 1.53036 * 109.49940 * 184.99913 * 16 13 12
19 19 C 1.53037 * 109.53839 * 178.67965 * 18 16 13
20 20 C 1.53196 * 109.31160 * 61.36690 * 19 18 16
21 21 N 1.46932 * 108.77447 * 305.36348 * 20 19 18
22 22 C 1.36933 * 120.63227 * 233.58897 * 21 20 19
23 23 H 1.08000 * 120.00106 * 151.83446 * 22 21 20
24 24 C 1.38815 * 119.99801 * 331.83419 * 22 21 20
25 25 N 1.31612 * 120.00090 * 343.07689 * 24 22 21
26 26 Si 1.86795 * 119.99858 * 163.07634 * 24 22 21
27 27 H 1.48497 * 109.47398 * 359.97438 * 26 24 22
28 28 H 1.48496 * 109.47290 * 120.00195 * 26 24 22
29 29 H 1.48499 * 109.47370 * 239.99780 * 26 24 22
30 30 C 1.46924 * 118.73801 * 53.60831 * 21 20 19
31 31 H 1.08999 * 109.46693 * 60.00374 * 1 2 3
32 32 H 1.08998 * 109.47168 * 180.02562 * 1 2 3
33 33 H 1.09000 * 109.47191 * 300.00479 * 1 2 3
34 34 H 1.09000 * 109.47191 * 239.99521 * 2 1 3
35 35 H 1.09006 * 109.46931 * 119.99920 * 2 1 3
36 36 H 1.07996 * 119.40950 * 179.97438 * 6 5 4
37 37 H 1.07996 * 120.26947 * 180.02562 * 7 6 5
38 38 H 1.08006 * 120.82320 * 180.25470 * 8 7 6
39 39 H 0.97000 * 120.00666 * 0.02562 * 12 10 9
40 40 H 1.09001 * 109.46771 * 299.99722 * 15 13 12
41 41 H 1.08993 * 109.47065 * 60.00173 * 15 13 12
42 42 H 1.09005 * 109.47076 * 180.02562 * 15 13 12
43 43 H 1.09003 * 109.45790 * 298.70122 * 18 16 13
44 44 H 1.09000 * 109.45981 * 58.67040 * 18 16 13
45 45 H 1.08996 * 109.49853 * 181.31152 * 19 18 16
46 46 H 1.09000 * 109.49859 * 301.38163 * 19 18 16
47 47 H 1.08995 * 109.58928 * 65.14840 * 20 19 18
48 48 H 1.09000 * 109.58658 * 185.58063 * 20 19 18
49 49 H 0.97004 * 120.00272 * 180.02562 * 25 24 22
50 50 H 1.08993 * 109.59213 * 186.60405 * 30 21 20
51 51 H 1.09005 * 109.58716 * 66.17778 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3490 1.5247 0.0005
5 7 4.1508 0.4732 0.0005
6 6 5.4635 0.6001 0.0015
7 6 6.0626 1.8473 0.0020
8 6 5.2714 2.9820 -0.0034
9 6 3.8806 2.8228 0.0010
10 6 2.9901 3.9989 0.0000
11 8 1.7836 3.8480 -0.0013
12 7 3.5140 5.2407 0.0005
13 6 2.6296 6.4087 0.0001
14 1 1.7388 6.1902 0.5888
15 6 2.2225 6.7396 -1.4373
16 6 3.3636 7.6045 0.6103
17 1 3.7327 7.3385 1.6008
18 6 2.4024 8.7898 0.7248
19 6 3.1265 9.9761 1.3653
20 6 4.3028 10.3917 0.4762
21 7 5.1561 9.2187 0.2420
22 6 6.4978 9.2669 0.5117
23 1 7.0273 8.3650 0.7810
24 6 7.1773 10.4752 0.4389
25 7 6.6404 11.4950 -0.1967
26 14 8.8538 10.6537 1.2430
27 1 9.2320 9.3714 1.8894
28 1 9.8627 11.0051 0.2116
29 1 8.7995 11.7269 2.2680
30 6 4.5426 7.9931 -0.2874
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3633 0.5139 0.8899
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5139 0.8900
36 1 6.0819 -0.2853 0.0019
37 1 7.1391 1.9341 0.0025
38 1 5.7157 3.9664 -0.0072
39 1 4.4764 5.3612 0.0012
40 1 3.1134 6.9582 -2.0260
41 1 1.6996 5.8878 -1.8720
42 1 1.5648 7.6089 -1.4377
43 1 2.0528 9.0710 -0.2686
44 1 1.5502 8.5078 1.3432
45 1 2.4349 10.8122 1.4679
46 1 3.4974 9.6879 2.3489
47 1 3.9268 10.7658 -0.4760
48 1 4.8805 11.1701 0.9747
49 1 7.1154 12.3392 -0.2479
50 1 5.2783 7.1890 -0.2928
51 1 4.1861 8.1718 -1.3018
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025608142.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:58
Heat of formation + Delta-G solvation = -43.308348 kcal
Electronic energy + Delta-G solvation = -31243.142373 eV
Core-core repulsion = 27142.417602 eV
Total energy + Delta-G solvation = -4100.724771 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.97860 -40.68833 -39.32995 -39.01858 -36.63064 -34.77663 -33.88670 -32.99163
-32.32664 -32.13046 -30.92277 -29.43075 -27.19927 -26.10282 -25.35730 -24.51409
-23.85094 -23.27029 -22.31908 -21.35470 -20.24077 -19.57339 -18.81447 -18.37118
-17.98020 -17.37662 -16.83715 -16.72296 -16.12925 -16.04336 -15.74952 -15.69016
-15.44770 -15.05691 -14.90645 -14.84921 -14.63979 -14.21875 -14.05295 -13.90113
-13.63896 -13.54398 -13.33258 -13.30889 -13.27524 -13.02366 -12.78107 -12.68254
-12.46743 -12.23488 -12.03793 -11.91939 -11.74645 -11.67123 -11.49200 -11.27893
-11.14581 -11.04251 -11.03456 -10.59629 -10.50111 -10.08899 -9.54135 -8.62255
-7.83509 -5.28611 -0.35228 0.22463 1.47723 1.50662 1.59925 1.87978
1.98870 2.12548 2.53425 2.80115 3.25021 3.31541 3.58387 3.71776
3.77506 3.94950 3.95655 4.01866 4.05561 4.06945 4.13581 4.22460
4.36415 4.39858 4.42559 4.47910 4.52167 4.67377 4.71785 4.81063
4.86811 4.87340 4.90757 4.91498 4.99159 5.06464 5.08994 5.15957
5.18641 5.22320 5.30742 5.36543 5.41653 5.48804 5.54572 5.61392
5.70895 5.81510 6.23270 6.42514 6.51921 6.73694 7.18388 7.22929
7.90277 8.42471 9.22762
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013812 B = 0.002699 C = 0.002323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2026.773513 B =10369.860893 C =12048.915135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.058 3.942
3 O -0.298 6.298
4 C 0.351 3.649
5 N -0.559 5.559
6 C 0.165 3.835
7 C -0.208 4.208
8 C -0.008 4.008
9 C -0.235 4.235
10 C 0.562 3.438
11 O -0.560 6.560
12 N -0.711 5.711
13 C 0.161 3.839
14 H 0.078 0.922
15 C -0.158 4.158
16 C -0.097 4.097
17 H 0.066 0.934
18 C -0.098 4.098
19 C -0.131 4.131
20 C 0.174 3.826
21 N -0.609 5.609
22 C -0.256 4.256
23 H 0.071 0.929
24 C -0.053 4.053
25 N -0.936 5.936
26 Si 0.963 3.037
27 H -0.263 1.263
28 H -0.294 1.294
29 H -0.295 1.295
30 C 0.151 3.849
31 H 0.057 0.943
32 H 0.105 0.895
33 H 0.057 0.943
34 H 0.069 0.931
35 H 0.068 0.932
36 H 0.203 0.797
37 H 0.181 0.819
38 H 0.162 0.838
39 H 0.406 0.594
40 H 0.061 0.939
41 H 0.047 0.953
42 H 0.075 0.925
43 H 0.063 0.937
44 H 0.072 0.928
45 H 0.068 0.932
46 H 0.049 0.951
47 H -0.004 1.004
48 H 0.050 0.950
49 H 0.248 0.752
50 H 0.055 0.945
51 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.448 -22.341 0.647 23.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.017 4.017
3 O -0.204 6.204
4 C 0.172 3.828
5 N -0.284 5.284
6 C 0.009 3.991
7 C -0.227 4.227
8 C -0.033 4.033
9 C -0.242 4.242
10 C 0.350 3.650
11 O -0.439 6.439
12 N -0.364 5.364
13 C 0.057 3.943
14 H 0.096 0.904
15 C -0.216 4.216
16 C -0.117 4.117
17 H 0.085 0.915
18 C -0.136 4.136
19 C -0.170 4.170
20 C 0.048 3.952
21 N -0.332 5.332
22 C -0.386 4.386
23 H 0.089 0.911
24 C -0.248 4.248
25 N -0.582 5.582
26 Si 0.792 3.208
27 H -0.187 1.187
28 H -0.222 1.222
29 H -0.222 1.222
30 C 0.026 3.974
31 H 0.076 0.924
32 H 0.124 0.876
33 H 0.076 0.924
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.220 0.780
37 H 0.198 0.802
38 H 0.180 0.820
39 H 0.244 0.756
40 H 0.080 0.920
41 H 0.066 0.934
42 H 0.094 0.906
43 H 0.082 0.918
44 H 0.091 0.909
45 H 0.086 0.914
46 H 0.067 0.933
47 H 0.014 0.986
48 H 0.068 0.932
49 H 0.057 0.943
50 H 0.074 0.926
51 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -6.878 -22.933 0.621 23.950
hybrid contribution 1.693 1.401 0.187 2.205
sum -5.185 -21.532 0.808 22.162
Atomic orbital electron populations
1.21805 0.91728 1.04049 1.02799 1.22861 0.96099 0.80245 1.02511
1.86502 1.16456 1.31575 1.85846 1.20031 0.84766 0.89148 0.88898
1.67556 1.07892 1.31782 1.21184 1.23425 0.88437 0.99512 0.87735
1.22374 1.03462 0.91857 1.05025 1.22017 0.90083 1.01941 0.89306
1.20071 0.95345 0.91601 1.17138 1.18088 0.87578 0.83284 0.76065
1.90778 1.15823 1.86402 1.50927 1.45978 1.10945 1.04762 1.74698
1.20841 0.92789 0.83612 0.97102 0.90432 1.22197 1.01881 1.01571
0.95977 1.21735 0.96609 0.93825 0.99561 0.91516 1.21412 0.97084
0.94009 1.01079 1.22012 0.97727 0.98247 0.99014 1.20607 0.90071
0.89640 0.94833 1.44288 1.04275 1.10080 1.74522 1.19556 0.85491
0.94791 1.38805 0.91093 1.25777 1.01204 0.97607 1.00214 1.70194
1.40208 1.03395 1.44400 0.85269 0.80055 0.77854 0.77651 1.18679
1.22171 1.22223 1.21118 0.93319 0.88673 0.94298 0.92409 0.87624
0.92423 0.91308 0.91323 0.78043 0.80202 0.82018 0.75635 0.92001
0.93392 0.90630 0.91812 0.90949 0.91379 0.93259 0.98606 0.93180
0.94311 0.92619 0.95902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16
2 C 0.06 1.20 6.03 71.98 0.43 1.63 16
3 O -0.30 -8.70 8.22 -66.41 -0.55 -9.24 16
4 C 0.35 9.40 7.51 85.13 0.64 10.04 16
5 N -0.56 -12.04 9.21 -308.00 -2.84 -14.88 16
6 C 0.17 2.32 11.17 84.71 0.95 3.26 16
7 C -0.21 -2.65 10.09 22.32 0.23 -2.43 16
8 C -0.01 -0.14 9.64 22.72 0.22 0.08 16
9 C -0.24 -6.04 5.90 -19.91 -0.12 -6.16 16
10 C 0.56 17.01 7.74 86.69 0.67 17.68 16
11 O -0.56 -20.85 14.85 16.83 0.25 -20.60 16
12 N -0.71 -19.01 4.97 -445.70 -2.21 -21.23 16
13 C 0.16 4.58 2.35 45.00 0.11 4.69 16
14 H 0.08 2.35 7.58 -2.39 -0.02 2.34 16
15 C -0.16 -4.37 8.76 71.99 0.63 -3.74 16
16 C -0.10 -3.02 2.27 -10.71 -0.02 -3.05 16
17 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
18 C -0.10 -3.02 4.89 30.62 0.15 -2.87 16
19 C -0.13 -4.76 6.08 30.67 0.19 -4.58 16
20 C 0.17 8.21 5.30 86.36 0.46 8.67 16
21 N -0.61 -29.01 2.99 -699.09 -2.09 -31.11 16
22 C -0.26 -13.40 9.58 84.03 0.81 -12.59 16
23 H 0.07 3.54 7.88 -2.91 -0.02 3.51 16
24 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16
25 N -0.94 -54.46 11.20 21.65 0.24 -54.22 16
26 Si 0.96 43.55 29.59 68.60 2.03 45.58 16
27 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16
29 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16
30 C 0.15 5.68 5.26 86.36 0.45 6.13 16
31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16
35 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16
36 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16
37 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16
38 H 0.16 2.28 6.52 -2.91 -0.02 2.27 16
39 H 0.41 9.41 5.38 -92.71 -0.50 8.92 16
40 H 0.06 1.74 6.23 -2.39 -0.01 1.73 16
41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.07 1.95 6.59 -2.38 -0.02 1.94 16
43 H 0.06 1.94 6.63 -2.39 -0.02 1.92 16
44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
48 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16
49 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16
50 H 0.06 1.94 6.75 -2.39 -0.02 1.93 16
51 H 0.02 0.89 6.06 -2.38 -0.01 0.88 16
Total: -1.00 -72.68 399.70 2.21 -70.47
By element:
Atomic # 1 Polarization: 22.20 SS G_CDS: 0.44 Total: 22.64 kcal
Atomic # 6 Polarization: 5.63 SS G_CDS: 6.94 Total: 12.57 kcal
Atomic # 7 Polarization: -114.53 SS G_CDS: -6.90 Total: -121.43 kcal
Atomic # 8 Polarization: -29.55 SS G_CDS: -0.30 Total: -29.84 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Total: -72.68 2.21 -70.47 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025608142.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.163 kcal
(2) G-P(sol) polarization free energy of solvation -72.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds