Wall clock time and date at job start Wed Apr 1 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47298 * 2 1 4 4 C 1.35427 * 116.99936 * 179.97438 * 3 2 1 5 5 N 1.32232 * 119.79884 * 0.02562 * 4 3 2 6 6 C 1.31887 * 121.80164 * 180.02562 * 5 4 3 7 7 C 1.38360 * 121.18139 * 359.96987 * 6 5 4 8 8 C 1.38334 * 119.45558 * 359.76905 * 7 6 5 9 9 C 1.39992 * 118.35408 * 0.47504 * 8 7 6 10 10 C 1.47524 * 120.59830 * 179.80086 * 9 8 7 11 11 O 1.21587 * 119.99854 * 179.72431 * 10 9 8 12 12 N 1.34777 * 119.99815 * 359.71841 * 10 9 8 13 13 C 1.46500 * 119.99654 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47312 * 34.99888 * 13 12 10 15 15 C 1.53009 * 109.46990 * 275.00298 * 13 12 10 16 16 C 1.53005 * 109.47346 * 155.00477 * 13 12 10 17 17 H 1.09000 * 109.51848 * 305.07648 * 16 13 12 18 18 C 1.53036 * 109.49940 * 184.99913 * 16 13 12 19 19 C 1.53037 * 109.53839 * 178.67965 * 18 16 13 20 20 C 1.53196 * 109.31160 * 61.36690 * 19 18 16 21 21 N 1.46932 * 108.77447 * 305.36348 * 20 19 18 22 22 C 1.36933 * 120.63227 * 233.58897 * 21 20 19 23 23 H 1.08000 * 120.00106 * 151.83446 * 22 21 20 24 24 C 1.38815 * 119.99801 * 331.83419 * 22 21 20 25 25 N 1.31612 * 120.00090 * 343.07689 * 24 22 21 26 26 Si 1.86795 * 119.99858 * 163.07634 * 24 22 21 27 27 H 1.48497 * 109.47398 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47290 * 120.00195 * 26 24 22 29 29 H 1.48499 * 109.47370 * 239.99780 * 26 24 22 30 30 C 1.46924 * 118.73801 * 53.60831 * 21 20 19 31 31 H 1.08999 * 109.46693 * 60.00374 * 1 2 3 32 32 H 1.08998 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47191 * 300.00479 * 1 2 3 34 34 H 1.09000 * 109.47191 * 239.99521 * 2 1 3 35 35 H 1.09006 * 109.46931 * 119.99920 * 2 1 3 36 36 H 1.07996 * 119.40950 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.26947 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.82320 * 180.25470 * 8 7 6 39 39 H 0.97000 * 120.00666 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46771 * 299.99722 * 15 13 12 41 41 H 1.08993 * 109.47065 * 60.00173 * 15 13 12 42 42 H 1.09005 * 109.47076 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.45790 * 298.70122 * 18 16 13 44 44 H 1.09000 * 109.45981 * 58.67040 * 18 16 13 45 45 H 1.08996 * 109.49853 * 181.31152 * 19 18 16 46 46 H 1.09000 * 109.49859 * 301.38163 * 19 18 16 47 47 H 1.08995 * 109.58928 * 65.14840 * 20 19 18 48 48 H 1.09000 * 109.58658 * 185.58063 * 20 19 18 49 49 H 0.97004 * 120.00272 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.59213 * 186.60405 * 30 21 20 51 51 H 1.09005 * 109.58716 * 66.17778 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6001 0.0015 7 6 6.0626 1.8473 0.0020 8 6 5.2714 2.9820 -0.0034 9 6 3.8806 2.8228 0.0010 10 6 2.9901 3.9989 0.0000 11 8 1.7836 3.8480 -0.0013 12 7 3.5140 5.2407 0.0005 13 6 2.6296 6.4087 0.0001 14 1 1.7388 6.1902 0.5888 15 6 2.2225 6.7396 -1.4373 16 6 3.3636 7.6045 0.6103 17 1 3.7327 7.3385 1.6008 18 6 2.4024 8.7898 0.7248 19 6 3.1265 9.9761 1.3653 20 6 4.3028 10.3917 0.4762 21 7 5.1561 9.2187 0.2420 22 6 6.4978 9.2669 0.5117 23 1 7.0273 8.3650 0.7810 24 6 7.1773 10.4752 0.4389 25 7 6.6404 11.4950 -0.1967 26 14 8.8538 10.6537 1.2430 27 1 9.2320 9.3714 1.8894 28 1 9.8627 11.0051 0.2116 29 1 8.7995 11.7269 2.2680 30 6 4.5426 7.9931 -0.2874 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 6.0819 -0.2853 0.0019 37 1 7.1391 1.9341 0.0025 38 1 5.7157 3.9664 -0.0072 39 1 4.4764 5.3612 0.0012 40 1 3.1134 6.9582 -2.0260 41 1 1.6996 5.8878 -1.8720 42 1 1.5648 7.6089 -1.4377 43 1 2.0528 9.0710 -0.2686 44 1 1.5502 8.5078 1.3432 45 1 2.4349 10.8122 1.4679 46 1 3.4974 9.6879 2.3489 47 1 3.9268 10.7658 -0.4760 48 1 4.8805 11.1701 0.9747 49 1 7.1154 12.3392 -0.2479 50 1 5.2783 7.1890 -0.2928 51 1 4.1861 8.1718 -1.3018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025608142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:58 Heat of formation + Delta-G solvation = -43.308348 kcal Electronic energy + Delta-G solvation = -31243.142373 eV Core-core repulsion = 27142.417602 eV Total energy + Delta-G solvation = -4100.724771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97860 -40.68833 -39.32995 -39.01858 -36.63064 -34.77663 -33.88670 -32.99163 -32.32664 -32.13046 -30.92277 -29.43075 -27.19927 -26.10282 -25.35730 -24.51409 -23.85094 -23.27029 -22.31908 -21.35470 -20.24077 -19.57339 -18.81447 -18.37118 -17.98020 -17.37662 -16.83715 -16.72296 -16.12925 -16.04336 -15.74952 -15.69016 -15.44770 -15.05691 -14.90645 -14.84921 -14.63979 -14.21875 -14.05295 -13.90113 -13.63896 -13.54398 -13.33258 -13.30889 -13.27524 -13.02366 -12.78107 -12.68254 -12.46743 -12.23488 -12.03793 -11.91939 -11.74645 -11.67123 -11.49200 -11.27893 -11.14581 -11.04251 -11.03456 -10.59629 -10.50111 -10.08899 -9.54135 -8.62255 -7.83509 -5.28611 -0.35228 0.22463 1.47723 1.50662 1.59925 1.87978 1.98870 2.12548 2.53425 2.80115 3.25021 3.31541 3.58387 3.71776 3.77506 3.94950 3.95655 4.01866 4.05561 4.06945 4.13581 4.22460 4.36415 4.39858 4.42559 4.47910 4.52167 4.67377 4.71785 4.81063 4.86811 4.87340 4.90757 4.91498 4.99159 5.06464 5.08994 5.15957 5.18641 5.22320 5.30742 5.36543 5.41653 5.48804 5.54572 5.61392 5.70895 5.81510 6.23270 6.42514 6.51921 6.73694 7.18388 7.22929 7.90277 8.42471 9.22762 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002699 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.773513 B =10369.860893 C =12048.915135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.298 6.298 4 C 0.351 3.649 5 N -0.559 5.559 6 C 0.165 3.835 7 C -0.208 4.208 8 C -0.008 4.008 9 C -0.235 4.235 10 C 0.562 3.438 11 O -0.560 6.560 12 N -0.711 5.711 13 C 0.161 3.839 14 H 0.078 0.922 15 C -0.158 4.158 16 C -0.097 4.097 17 H 0.066 0.934 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.256 4.256 23 H 0.071 0.929 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.963 3.037 27 H -0.263 1.263 28 H -0.294 1.294 29 H -0.295 1.295 30 C 0.151 3.849 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.203 0.797 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.406 0.594 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.049 0.951 47 H -0.004 1.004 48 H 0.050 0.950 49 H 0.248 0.752 50 H 0.055 0.945 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -22.341 0.647 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.204 6.204 4 C 0.172 3.828 5 N -0.284 5.284 6 C 0.009 3.991 7 C -0.227 4.227 8 C -0.033 4.033 9 C -0.242 4.242 10 C 0.350 3.650 11 O -0.439 6.439 12 N -0.364 5.364 13 C 0.057 3.943 14 H 0.096 0.904 15 C -0.216 4.216 16 C -0.117 4.117 17 H 0.085 0.915 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.332 5.332 22 C -0.386 4.386 23 H 0.089 0.911 24 C -0.248 4.248 25 N -0.582 5.582 26 Si 0.792 3.208 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.222 1.222 30 C 0.026 3.974 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.014 0.986 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.878 -22.933 0.621 23.950 hybrid contribution 1.693 1.401 0.187 2.205 sum -5.185 -21.532 0.808 22.162 Atomic orbital electron populations 1.21805 0.91728 1.04049 1.02799 1.22861 0.96099 0.80245 1.02511 1.86502 1.16456 1.31575 1.85846 1.20031 0.84766 0.89148 0.88898 1.67556 1.07892 1.31782 1.21184 1.23425 0.88437 0.99512 0.87735 1.22374 1.03462 0.91857 1.05025 1.22017 0.90083 1.01941 0.89306 1.20071 0.95345 0.91601 1.17138 1.18088 0.87578 0.83284 0.76065 1.90778 1.15823 1.86402 1.50927 1.45978 1.10945 1.04762 1.74698 1.20841 0.92789 0.83612 0.97102 0.90432 1.22197 1.01881 1.01571 0.95977 1.21735 0.96609 0.93825 0.99561 0.91516 1.21412 0.97084 0.94009 1.01079 1.22012 0.97727 0.98247 0.99014 1.20607 0.90071 0.89640 0.94833 1.44288 1.04275 1.10080 1.74522 1.19556 0.85491 0.94791 1.38805 0.91093 1.25777 1.01204 0.97607 1.00214 1.70194 1.40208 1.03395 1.44400 0.85269 0.80055 0.77854 0.77651 1.18679 1.22171 1.22223 1.21118 0.93319 0.88673 0.94298 0.92409 0.87624 0.92423 0.91308 0.91323 0.78043 0.80202 0.82018 0.75635 0.92001 0.93392 0.90630 0.91812 0.90949 0.91379 0.93259 0.98606 0.93180 0.94311 0.92619 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.06 1.20 6.03 71.98 0.43 1.63 16 3 O -0.30 -8.70 8.22 -66.41 -0.55 -9.24 16 4 C 0.35 9.40 7.51 85.13 0.64 10.04 16 5 N -0.56 -12.04 9.21 -308.00 -2.84 -14.88 16 6 C 0.17 2.32 11.17 84.71 0.95 3.26 16 7 C -0.21 -2.65 10.09 22.32 0.23 -2.43 16 8 C -0.01 -0.14 9.64 22.72 0.22 0.08 16 9 C -0.24 -6.04 5.90 -19.91 -0.12 -6.16 16 10 C 0.56 17.01 7.74 86.69 0.67 17.68 16 11 O -0.56 -20.85 14.85 16.83 0.25 -20.60 16 12 N -0.71 -19.01 4.97 -445.70 -2.21 -21.23 16 13 C 0.16 4.58 2.35 45.00 0.11 4.69 16 14 H 0.08 2.35 7.58 -2.39 -0.02 2.34 16 15 C -0.16 -4.37 8.76 71.99 0.63 -3.74 16 16 C -0.10 -3.02 2.27 -10.71 -0.02 -3.05 16 17 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.10 -3.02 4.89 30.62 0.15 -2.87 16 19 C -0.13 -4.76 6.08 30.67 0.19 -4.58 16 20 C 0.17 8.21 5.30 86.36 0.46 8.67 16 21 N -0.61 -29.01 2.99 -699.09 -2.09 -31.11 16 22 C -0.26 -13.40 9.58 84.03 0.81 -12.59 16 23 H 0.07 3.54 7.88 -2.91 -0.02 3.51 16 24 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 25 N -0.94 -54.46 11.20 21.65 0.24 -54.22 16 26 Si 0.96 43.55 29.59 68.60 2.03 45.58 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 30 C 0.15 5.68 5.26 86.36 0.45 6.13 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 36 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.16 2.28 6.52 -2.91 -0.02 2.27 16 39 H 0.41 9.41 5.38 -92.71 -0.50 8.92 16 40 H 0.06 1.74 6.23 -2.39 -0.01 1.73 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.95 6.59 -2.38 -0.02 1.94 16 43 H 0.06 1.94 6.63 -2.39 -0.02 1.92 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 49 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.06 1.94 6.75 -2.39 -0.02 1.93 16 51 H 0.02 0.89 6.06 -2.38 -0.01 0.88 16 Total: -1.00 -72.68 399.70 2.21 -70.47 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.44 Total: 22.64 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.94 Total: 12.57 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.90 Total: -121.43 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.30 Total: -29.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.68 2.21 -70.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025608142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.163 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds