Wall clock time and date at job start Wed Apr 1 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46814 * 2 1 4 4 C 1.35425 * 116.99673 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80320 * 359.72907 * 4 3 2 6 6 C 1.31879 * 121.80107 * 179.74836 * 5 4 3 7 7 C 1.50703 * 119.40728 * 180.27004 * 6 5 4 8 8 C 1.38354 * 121.18844 * 0.52734 * 6 5 4 9 9 C 1.38342 * 119.45537 * 359.74570 * 8 6 5 10 10 C 1.39994 * 118.34684 * 359.97438 * 9 8 6 11 11 C 1.47523 * 120.59227 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99764 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00259 * 359.97438 * 11 10 9 14 14 C 1.46507 * 119.99908 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.32658 * 34.99813 * 14 13 11 16 16 C 1.47091 * 109.32923 * 154.65357 * 14 13 11 17 17 C 1.52561 * 114.32930 * 183.06168 * 16 14 13 18 18 C 1.50881 * 109.35490 * 274.98331 * 17 16 14 19 19 C 1.53940 * 110.09766 * 91.88711 * 18 17 16 20 20 N 1.47602 * 112.14215 * 319.43668 * 19 18 17 21 21 C 1.36939 * 118.64547 * 137.86989 * 20 19 18 22 22 H 1.08002 * 119.99960 * 207.05533 * 21 20 19 23 23 C 1.38811 * 119.99909 * 27.05150 * 21 20 19 24 24 N 1.31612 * 120.00160 * 16.58754 * 23 21 20 25 25 Si 1.86803 * 119.99967 * 196.58109 * 23 21 20 26 26 H 1.48503 * 109.46980 * 94.74153 * 25 23 21 27 27 H 1.48496 * 109.47477 * 214.74146 * 25 23 21 28 28 H 1.48505 * 109.47196 * 334.74609 * 25 23 21 29 29 C 1.44658 * 122.54305 * 317.85745 * 20 19 18 30 30 H 1.08998 * 109.47189 * 59.99897 * 1 2 3 31 31 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47087 * 299.99876 * 1 2 3 33 33 H 1.08997 * 109.47611 * 240.00173 * 2 1 3 34 34 H 1.08994 * 109.47112 * 119.99602 * 2 1 3 35 35 H 1.08994 * 109.47552 * 270.25264 * 7 6 5 36 36 H 1.09000 * 109.47294 * 30.25803 * 7 6 5 37 37 H 1.09006 * 109.46896 * 150.25565 * 7 6 5 38 38 H 1.07998 * 120.27569 * 179.75937 * 8 6 5 39 39 H 1.07992 * 120.82427 * 179.97438 * 9 8 6 40 40 H 0.96996 * 119.99848 * 359.97438 * 13 11 10 41 41 H 1.09006 * 108.51000 * 304.31145 * 16 14 13 42 42 H 1.09000 * 108.51461 * 61.95753 * 16 14 13 43 43 H 1.09003 * 109.48788 * 34.94160 * 17 16 14 44 44 H 1.08998 * 109.49155 * 155.01368 * 17 16 14 45 45 H 1.08997 * 109.36828 * 212.08401 * 18 17 16 46 46 H 1.09001 * 109.36473 * 331.82137 * 18 17 16 47 47 H 1.08997 * 108.95211 * 80.12487 * 19 18 17 48 48 H 1.09007 * 108.94813 * 198.75381 * 19 18 17 49 49 H 0.96997 * 120.00367 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.61601 * 330.84061 * 29 20 19 51 51 H 1.09002 * 109.32828 * 210.89778 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4734 0.0065 6 6 5.4634 0.6005 0.0023 7 6 6.3265 -0.6350 0.0033 8 6 6.0625 1.8476 0.0024 9 6 5.2713 2.9824 0.0015 10 6 3.8805 2.8230 0.0001 11 6 2.9900 3.9991 -0.0014 12 8 1.7835 3.8481 -0.0031 13 7 3.5137 5.2409 -0.0009 14 6 2.6292 6.4089 -0.0029 15 1 1.7386 6.1881 0.5855 16 6 3.3342 7.5545 0.5922 17 6 2.4886 8.8184 0.7145 18 6 2.5398 9.5821 -0.5858 19 6 1.3738 9.1558 -1.4959 20 7 1.1362 7.6998 -1.4505 21 6 -0.1550 7.2466 -1.3988 22 1 -0.3748 6.2933 -0.9414 23 6 -1.1813 8.0126 -1.9344 24 7 -0.9047 8.9939 -2.7666 25 14 -2.9551 7.6504 -1.4740 26 1 -3.3619 8.5249 -0.3449 27 1 -3.8331 7.9108 -2.6430 28 1 -3.0805 6.2274 -1.0680 29 6 2.2139 6.7348 -1.4588 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 6.5338 -0.9326 1.0311 36 1 5.8054 -1.4426 -0.5108 37 1 7.2646 -0.4232 -0.5100 38 1 7.1390 1.9345 0.0028 39 1 5.7155 3.9667 0.0020 40 1 4.4761 5.3614 0.0009 41 1 3.6780 7.2706 1.5869 42 1 4.2055 7.7818 -0.0220 43 1 1.4567 8.5455 0.9355 44 1 2.8804 9.4418 1.5182 45 1 2.4667 10.6501 -0.3808 46 1 3.4838 9.3747 -1.0897 47 1 0.4686 9.6723 -1.1768 48 1 1.6015 9.4454 -2.5219 49 1 -1.6218 9.5294 -3.1406 50 1 3.0685 7.1453 -1.9968 51 1 1.8782 5.8232 -1.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034467276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:32 Heat of formation + Delta-G solvation = -42.106767 kcal Electronic energy + Delta-G solvation = -31591.974651 eV Core-core repulsion = 27491.301985 eV Total energy + Delta-G solvation = -4100.672666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02240 -40.66389 -39.22992 -39.05654 -36.21415 -34.93101 -34.21125 -33.28027 -32.86237 -31.92270 -31.45558 -28.85848 -27.86120 -25.97032 -25.18465 -24.68899 -23.96384 -23.31113 -21.67544 -21.61199 -20.83870 -19.46731 -18.60298 -18.58080 -17.93012 -17.42852 -17.12819 -16.49016 -16.41265 -15.89997 -15.71254 -15.49534 -15.37894 -15.05737 -15.05037 -14.81051 -14.37198 -14.16625 -14.01677 -13.96311 -13.77889 -13.52218 -13.32498 -13.11837 -13.03201 -13.00870 -12.86404 -12.81587 -12.49906 -12.47261 -12.31271 -12.05953 -11.71538 -11.64961 -11.46509 -11.37825 -11.14356 -11.11982 -10.95420 -10.61610 -10.51458 -10.12918 -9.46128 -8.63954 -7.89527 -5.35071 -0.35212 0.23908 1.39264 1.39908 1.51353 1.89711 1.99284 2.12673 2.49518 2.77391 3.10763 3.22570 3.68091 3.71013 3.76999 3.88589 3.93522 3.99463 4.09074 4.12914 4.20143 4.27925 4.32131 4.37622 4.46006 4.52094 4.68743 4.72555 4.76031 4.77107 4.82560 4.84819 4.93846 4.99339 5.00976 5.05796 5.12599 5.15053 5.17171 5.23912 5.29033 5.37187 5.43876 5.51384 5.62699 5.67352 5.71620 5.81998 6.24611 6.39427 6.62119 6.77966 7.17066 7.37418 7.93509 8.28317 9.14642 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.003250 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.329057 B = 8613.466443 C =10555.438419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.304 6.304 4 C 0.352 3.648 5 N -0.561 5.561 6 C 0.180 3.820 7 C -0.104 4.104 8 C -0.207 4.207 9 C 0.003 3.997 10 C -0.241 4.241 11 C 0.552 3.448 12 O -0.567 6.567 13 N -0.703 5.703 14 C 0.137 3.863 15 H 0.041 0.959 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.184 3.816 20 N -0.597 5.597 21 C -0.261 4.261 22 H 0.044 0.956 23 C -0.041 4.041 24 N -0.929 5.929 25 Si 0.956 3.044 26 H -0.279 1.279 27 H -0.287 1.287 28 H -0.283 1.283 29 C 0.160 3.840 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.189 0.811 39 H 0.180 0.820 40 H 0.412 0.588 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.037 0.963 48 H -0.004 1.004 49 H 0.251 0.749 50 H 0.053 0.947 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.863 -15.053 8.564 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.210 6.210 4 C 0.172 3.828 5 N -0.288 5.288 6 C 0.042 3.958 7 C -0.161 4.161 8 C -0.226 4.226 9 C -0.022 4.022 10 C -0.247 4.247 11 C 0.340 3.660 12 O -0.446 6.446 13 N -0.357 5.357 14 C 0.030 3.970 15 H 0.060 0.940 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.168 4.168 19 C 0.059 3.941 20 N -0.318 5.318 21 C -0.392 4.392 22 H 0.061 0.939 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.206 1.206 27 H -0.214 1.214 28 H -0.208 1.208 29 C 0.031 3.969 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.206 0.794 39 H 0.197 0.803 40 H 0.250 0.750 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.055 0.945 48 H 0.014 0.986 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 20.279 -15.663 8.466 26.986 hybrid contribution -1.215 0.549 -0.238 1.355 sum 19.064 -15.114 8.228 25.682 Atomic orbital electron populations 1.21821 0.92274 1.04052 1.02473 1.22812 0.95727 0.80286 1.02532 1.86555 1.16994 1.31584 1.85835 1.20074 0.84440 0.89414 0.88833 1.67344 1.07388 1.31853 1.22166 1.22022 0.88145 0.97735 0.87869 1.20949 0.98245 0.92245 1.04695 1.22207 1.03477 0.90808 1.06133 1.22037 0.89134 1.02203 0.88825 1.20073 0.95768 0.90982 1.17881 1.18306 0.87580 0.83818 0.76322 1.90864 1.16904 1.86427 1.50399 1.45736 1.10591 1.04310 1.75022 1.20687 0.92497 0.85103 0.98725 0.94036 1.20524 0.99016 0.93536 1.01497 1.20814 0.99570 0.95783 0.97498 1.21935 0.98682 0.99928 0.96280 1.20868 0.95968 0.82313 0.94929 1.43732 1.01336 1.01395 1.85384 1.19313 0.85110 1.04112 1.30654 0.93858 1.25615 1.01421 0.99443 0.97192 1.70204 1.31848 1.23683 1.31768 0.85432 0.81105 0.77641 0.77413 1.20571 1.21364 1.20804 1.20997 0.90591 0.91256 0.94010 0.93147 0.87178 0.92693 0.91328 0.90930 0.88397 0.90815 0.87139 0.79417 0.80316 0.74964 0.90517 0.89673 0.94513 0.89655 0.90952 0.91312 0.94471 0.98606 0.94026 0.92926 0.97412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 10.28 71.98 0.74 -2.95 16 2 C 0.06 1.66 6.03 71.98 0.43 2.10 16 3 O -0.30 -11.09 8.22 -66.39 -0.55 -11.64 16 4 C 0.35 11.15 7.51 85.13 0.64 11.79 16 5 N -0.56 -14.19 9.11 -296.06 -2.70 -16.89 16 6 C 0.18 3.04 6.78 42.58 0.29 3.33 16 7 C -0.10 -0.87 10.16 71.24 0.72 -0.14 16 8 C -0.21 -2.63 9.71 22.32 0.22 -2.41 16 9 C 0.00 0.06 9.64 22.72 0.22 0.28 16 10 C -0.24 -6.99 5.90 -19.91 -0.12 -7.11 16 11 C 0.55 20.32 7.72 86.69 0.67 20.99 16 12 O -0.57 -27.86 14.85 16.81 0.25 -27.61 16 13 N -0.70 -21.03 5.01 -451.45 -2.26 -23.30 16 14 C 0.14 5.10 2.34 43.79 0.10 5.20 16 15 H 0.04 1.96 7.57 -2.39 -0.02 1.94 16 16 C -0.11 -3.04 4.55 28.61 0.13 -2.91 16 17 C -0.10 -3.17 5.51 29.76 0.16 -3.00 16 18 C -0.13 -4.51 5.70 30.22 0.17 -4.34 16 19 C 0.18 9.01 4.67 86.49 0.40 9.42 16 20 N -0.60 -31.66 2.27 -698.18 -1.58 -33.24 16 21 C -0.26 -15.88 9.44 84.03 0.79 -15.09 16 22 H 0.04 2.82 7.88 -2.91 -0.02 2.80 16 23 C -0.04 -2.47 4.84 84.86 0.41 -2.05 16 24 N -0.93 -57.27 11.11 21.65 0.24 -57.03 16 25 Si 0.96 49.06 29.59 68.60 2.03 51.09 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 29 C 0.16 7.24 5.24 87.36 0.46 7.70 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 34 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.29 8.07 -2.38 -0.02 0.27 16 38 H 0.19 0.66 8.06 -2.91 -0.02 0.63 16 39 H 0.18 1.61 6.51 -2.91 -0.02 1.59 16 40 H 0.41 7.98 6.68 -92.71 -0.62 7.36 16 41 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 42 H 0.08 1.93 7.34 -2.39 -0.02 1.92 16 43 H 0.04 1.49 7.48 -2.39 -0.02 1.47 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.07 2.10 7.31 -2.39 -0.02 2.08 16 47 H 0.04 2.06 6.40 -2.39 -0.02 2.04 16 48 H 0.00 -0.22 8.03 -2.38 -0.02 -0.24 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.05 2.12 8.05 -2.38 -0.02 2.10 16 51 H 0.01 0.39 7.97 -2.39 -0.02 0.37 16 Total: -1.00 -86.80 404.51 2.19 -84.62 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.31 Total: 13.21 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.45 Total: 20.78 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.30 Total: -130.45 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.30 Total: -39.25 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -86.80 2.19 -84.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.510 kcal (2) G-P(sol) polarization free energy of solvation -86.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds