Wall clock time and date at job start Wed Apr 1 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 O 1.42896 * 109.47447 * 120.00465 * 2 1 3 5 5 C 1.35498 * 117.00230 * 149.99738 * 4 2 1 6 6 C 1.39168 * 119.52813 * 180.02562 * 5 4 2 7 7 C 1.37958 * 119.26127 * 179.76184 * 6 5 4 8 8 C 1.40278 * 118.35936 * 0.47991 * 7 6 5 9 9 C 1.47617 * 120.49889 * 179.75624 * 8 7 6 10 10 O 1.21584 * 119.99853 * 359.71290 * 9 8 7 11 11 N 1.34773 * 120.00275 * 179.72192 * 9 8 7 12 12 C 1.46496 * 120.00354 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99874 * 12 11 9 14 14 C 1.53002 * 109.47313 * 84.99862 * 12 11 9 15 15 C 1.53001 * 109.46963 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46886 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 18 18 N 1.46499 * 109.46840 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99991 * 85.00591 * 18 16 15 20 20 H 1.07998 * 119.99825 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00230 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47017 * 59.99561 * 23 21 19 25 25 H 1.48501 * 109.46738 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47076 * 299.99387 * 23 21 19 27 27 C 1.53002 * 109.47233 * 60.00670 * 16 15 14 28 28 C 1.52997 * 109.47194 * 204.99986 * 12 11 9 29 29 C 1.39522 * 119.00195 * 359.47660 * 8 7 6 30 30 N 1.31662 * 120.62982 * 0.29568 * 29 8 7 31 31 H 1.09002 * 109.46892 * 299.99467 * 1 2 3 32 32 H 1.09000 * 109.47255 * 59.99635 * 1 2 3 33 33 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46892 * 240.00533 * 2 1 3 35 35 H 1.08995 * 109.47092 * 60.00732 * 3 2 1 36 36 H 1.09002 * 109.46896 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47361 * 300.00300 * 3 2 1 38 38 H 1.07999 * 120.36546 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.81636 * 180.23292 * 7 6 5 40 40 H 0.97007 * 119.99952 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46497 * 300.00287 * 14 12 11 42 42 H 1.09002 * 109.47067 * 60.00040 * 14 12 11 43 43 H 1.09001 * 109.46652 * 179.97438 * 15 14 12 44 44 H 1.08992 * 109.47514 * 59.99933 * 15 14 12 45 45 H 0.97002 * 120.00410 * 264.99761 * 18 16 15 46 46 H 0.97001 * 120.00026 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47075 * 59.99068 * 27 16 15 48 48 H 1.08996 * 109.47407 * 180.02562 * 27 16 15 49 49 H 1.09001 * 109.47375 * 59.99949 * 28 12 11 50 50 H 1.09002 * 109.47497 * 299.99590 * 28 12 11 51 51 H 1.08001 * 119.68568 * 180.27823 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1972 -1.3122 1.0652 6 6 3.7105 -1.9859 2.1695 7 6 4.9210 -2.6383 2.0586 8 6 5.5955 -2.5869 0.8297 9 6 6.8964 -3.2637 0.6603 10 8 7.3936 -3.8670 1.5915 11 7 7.5331 -3.2126 -0.5264 12 6 8.8244 -3.8838 -0.6944 13 1 9.3915 -3.8183 0.2342 14 6 8.5928 -5.3543 -1.0479 15 6 9.9415 -6.0553 -1.2228 16 6 10.7263 -5.3778 -2.3479 17 1 10.1596 -5.4433 -3.2768 18 7 12.0174 -6.0494 -2.5157 19 6 12.1108 -7.1671 -3.3015 20 1 11.2326 -7.5536 -3.7971 21 6 13.3341 -7.8038 -3.4600 22 7 14.4042 -7.3330 -2.8556 23 14 13.4613 -9.3288 -4.5313 24 1 13.0478 -8.9955 -5.9180 25 1 14.8647 -9.8141 -4.5368 26 1 12.5726 -10.3887 -3.9910 27 6 10.9580 -3.9073 -1.9945 28 6 9.6088 -3.2062 -1.8198 29 6 5.0155 -1.8916 -0.2317 30 7 3.8555 -1.2868 -0.0834 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6768 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 3.1652 -2.0013 3.1016 39 1 5.3409 -3.1719 2.8985 40 1 7.1363 -2.7315 -1.2695 41 1 8.0340 -5.8369 -0.2462 42 1 8.0258 -5.4198 -1.9765 43 1 9.7765 -7.1030 -1.4741 44 1 10.5082 -5.9898 -0.2940 45 1 12.8062 -5.7024 -2.0704 46 1 15.2591 -7.7777 -2.9668 47 1 11.5246 -3.8418 -1.0656 48 1 11.5167 -3.4245 -2.7963 49 1 9.7738 -2.1585 -1.5680 50 1 9.0418 -3.2717 -2.7485 51 1 5.5231 -1.8488 -1.1841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034659768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:58 Heat of formation + Delta-G solvation = -44.970984 kcal Electronic energy + Delta-G solvation = -29666.799341 eV Core-core repulsion = 25566.002473 eV Total energy + Delta-G solvation = -4100.796868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30495 -40.02140 -38.62441 -37.74545 -34.94350 -33.84559 -33.10605 -32.94353 -31.22706 -30.41074 -30.17325 -27.77684 -27.34309 -24.73167 -24.47343 -23.47581 -22.37338 -21.73606 -21.18580 -20.63930 -19.55140 -19.04029 -17.96940 -17.40300 -16.96414 -16.22897 -15.98444 -15.41871 -15.17768 -15.12131 -14.86626 -14.70308 -14.21428 -14.06177 -13.75472 -13.64870 -13.52127 -13.45269 -13.13796 -12.99428 -12.83480 -12.79924 -12.53389 -12.40954 -12.02834 -11.80802 -11.45767 -11.43265 -11.26601 -11.04646 -10.79812 -10.76891 -10.68645 -10.40814 -10.37004 -10.19130 -10.09561 -9.85697 -9.75922 -9.57015 -9.11744 -8.89518 -8.82779 -6.92364 -5.73727 -3.02168 0.33878 0.75382 2.48477 2.63597 2.98239 3.45535 3.47788 3.50033 3.50944 3.67898 4.33206 4.34197 4.43664 4.46583 4.57462 4.61262 4.66256 4.76054 4.89585 5.04111 5.05506 5.12580 5.19739 5.24597 5.27693 5.30448 5.43425 5.53007 5.60770 5.61172 5.66632 5.68985 5.69027 5.73540 5.85258 5.88233 5.91751 6.03548 6.23937 6.25049 6.30513 6.48375 6.57143 6.64915 6.73762 6.74863 7.00310 7.16742 7.27001 7.37015 7.72201 8.07200 8.45179 9.56027 10.14821 10.49270 11.48947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.001638 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.659296 B =17092.788399 C =17318.618879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.298 6.298 5 C 0.344 3.656 6 C -0.198 4.198 7 C 0.018 3.982 8 C -0.225 4.225 9 C 0.566 3.434 10 O -0.534 6.534 11 N -0.720 5.720 12 C 0.146 3.854 13 H 0.090 0.910 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.725 5.725 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.120 4.120 28 C -0.119 4.119 29 C 0.179 3.821 30 N -0.544 5.544 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.395 0.605 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.342 18.478 6.941 33.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.205 6.205 5 C 0.166 3.834 6 C -0.219 4.219 7 C -0.008 4.008 8 C -0.231 4.231 9 C 0.352 3.648 10 O -0.411 6.411 11 N -0.371 5.371 12 C 0.042 3.958 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.173 4.173 16 C 0.067 3.933 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.159 4.159 28 C -0.158 4.158 29 C 0.021 3.979 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.230 0.770 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -27.541 18.385 7.006 33.847 hybrid contribution 0.530 -0.937 -0.313 1.121 sum -27.011 17.448 6.693 32.846 Atomic orbital electron populations 1.21919 0.92653 1.03142 1.03144 1.22432 0.94616 0.92857 0.87783 1.22222 1.02204 0.95438 1.02775 1.86283 1.31350 1.63807 1.39024 1.20056 0.85556 0.88245 0.89584 1.21072 0.98212 1.03213 0.99396 1.21558 0.91064 0.91458 0.96718 1.20871 0.98665 1.06811 0.96712 1.17871 0.83921 0.80031 0.82966 1.90810 1.66969 1.43186 1.40177 1.46078 1.22920 1.55188 1.12898 1.21158 0.82412 0.92216 0.99977 0.89231 1.21903 0.99143 0.94295 1.00968 1.22226 0.94020 1.00173 1.00894 1.20241 0.88486 0.89365 0.95206 0.93610 1.42418 1.04863 1.31376 1.57893 1.19200 0.94103 1.02572 1.21042 0.91290 1.24730 0.95747 0.99569 1.00941 1.69648 0.99198 1.41975 1.47363 0.86290 0.76580 0.83181 0.80271 1.21339 1.21728 1.21327 1.21761 0.95148 0.96991 1.02019 1.21768 0.97221 0.99100 0.97693 1.22617 0.88963 0.88594 0.97740 1.67257 1.10592 1.24376 1.24480 0.91560 0.90308 0.91731 0.88995 0.91924 0.91911 0.90888 0.83375 0.82723 0.76985 0.92317 0.92273 0.91789 0.92464 0.78307 0.93517 0.91925 0.91329 0.91814 0.91514 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.56 37.16 0.36 -0.36 16 2 C 0.08 0.53 3.10 -26.73 -0.08 0.44 16 3 C -0.17 -0.98 9.53 37.16 0.35 -0.63 16 4 O -0.30 -2.56 9.75 -18.19 -0.18 -2.74 16 5 C 0.34 3.14 7.46 -16.96 -0.13 3.02 16 6 C -0.20 -1.62 10.02 -39.34 -0.39 -2.02 16 7 C 0.02 0.16 9.70 -38.92 -0.38 -0.22 16 8 C -0.22 -2.18 5.89 -104.82 -0.62 -2.80 16 9 C 0.57 6.82 7.74 -12.43 -0.10 6.73 16 10 O -0.53 -8.51 16.08 5.29 0.09 -8.43 16 11 N -0.72 -7.43 5.03 -54.82 -0.28 -7.71 16 12 C 0.15 1.86 2.45 -67.93 -0.17 1.69 16 13 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 14 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 15 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 16 C 0.18 3.40 2.77 -67.93 -0.19 3.22 16 17 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 18 N -0.73 -18.02 5.12 -53.42 -0.27 -18.29 16 19 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 C -0.12 -1.88 5.39 -26.70 -0.14 -2.02 16 28 C -0.12 -1.41 5.39 -26.71 -0.14 -1.55 16 29 C 0.18 1.46 10.71 -17.15 -0.18 1.28 16 30 N -0.54 -4.92 8.61 -12.96 -0.11 -5.04 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.67 6.97 -51.93 -0.36 0.31 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.32 7.73 -52.49 -0.41 0.91 16 40 H 0.40 2.83 6.66 -40.82 -0.27 2.56 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.16 0.86 6.41 -52.49 -0.34 0.53 16 LS Contribution 414.07 15.07 6.24 6.24 Total: -1.00 -33.26 414.07 -9.56 -42.81 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.39 Total: 8.17 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.35 Total: -4.93 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.06 Total: -58.56 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.26 -9.56 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.157 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds