Wall clock time and date at job start Wed Apr 1 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 O 1.42896 * 109.47447 * 120.00465 * 2 1 3 5 5 C 1.35498 * 117.00230 * 149.99738 * 4 2 1 6 6 C 1.39168 * 119.52813 * 180.02562 * 5 4 2 7 7 C 1.37958 * 119.26127 * 179.76184 * 6 5 4 8 8 C 1.40278 * 118.35936 * 0.47991 * 7 6 5 9 9 C 1.47617 * 120.49889 * 179.75624 * 8 7 6 10 10 O 1.21584 * 119.99853 * 359.71290 * 9 8 7 11 11 N 1.34773 * 120.00275 * 179.72192 * 9 8 7 12 12 C 1.46496 * 120.00354 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99874 * 12 11 9 14 14 C 1.53002 * 109.47313 * 84.99862 * 12 11 9 15 15 C 1.53001 * 109.46963 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46886 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 18 18 N 1.46499 * 109.46840 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99991 * 85.00591 * 18 16 15 20 20 H 1.07998 * 119.99825 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00230 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47017 * 59.99561 * 23 21 19 25 25 H 1.48501 * 109.46738 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47076 * 299.99387 * 23 21 19 27 27 C 1.53002 * 109.47233 * 60.00670 * 16 15 14 28 28 C 1.52997 * 109.47194 * 204.99986 * 12 11 9 29 29 C 1.39522 * 119.00195 * 359.47660 * 8 7 6 30 30 N 1.31662 * 120.62982 * 0.29568 * 29 8 7 31 31 H 1.09002 * 109.46892 * 299.99467 * 1 2 3 32 32 H 1.09000 * 109.47255 * 59.99635 * 1 2 3 33 33 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46892 * 240.00533 * 2 1 3 35 35 H 1.08995 * 109.47092 * 60.00732 * 3 2 1 36 36 H 1.09002 * 109.46896 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47361 * 300.00300 * 3 2 1 38 38 H 1.07999 * 120.36546 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.81636 * 180.23292 * 7 6 5 40 40 H 0.97007 * 119.99952 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46497 * 300.00287 * 14 12 11 42 42 H 1.09002 * 109.47067 * 60.00040 * 14 12 11 43 43 H 1.09001 * 109.46652 * 179.97438 * 15 14 12 44 44 H 1.08992 * 109.47514 * 59.99933 * 15 14 12 45 45 H 0.97002 * 120.00410 * 264.99761 * 18 16 15 46 46 H 0.97001 * 120.00026 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47075 * 59.99068 * 27 16 15 48 48 H 1.08996 * 109.47407 * 180.02562 * 27 16 15 49 49 H 1.09001 * 109.47375 * 59.99949 * 28 12 11 50 50 H 1.09002 * 109.47497 * 299.99590 * 28 12 11 51 51 H 1.08001 * 119.68568 * 180.27823 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1972 -1.3122 1.0652 6 6 3.7105 -1.9859 2.1695 7 6 4.9210 -2.6383 2.0586 8 6 5.5955 -2.5869 0.8297 9 6 6.8964 -3.2637 0.6603 10 8 7.3936 -3.8670 1.5915 11 7 7.5331 -3.2126 -0.5264 12 6 8.8244 -3.8838 -0.6944 13 1 9.3915 -3.8183 0.2342 14 6 8.5928 -5.3543 -1.0479 15 6 9.9415 -6.0553 -1.2228 16 6 10.7263 -5.3778 -2.3479 17 1 10.1596 -5.4433 -3.2768 18 7 12.0174 -6.0494 -2.5157 19 6 12.1108 -7.1671 -3.3015 20 1 11.2326 -7.5536 -3.7971 21 6 13.3341 -7.8038 -3.4600 22 7 14.4042 -7.3330 -2.8556 23 14 13.4613 -9.3288 -4.5313 24 1 13.0478 -8.9955 -5.9180 25 1 14.8647 -9.8141 -4.5368 26 1 12.5726 -10.3887 -3.9910 27 6 10.9580 -3.9073 -1.9945 28 6 9.6088 -3.2062 -1.8198 29 6 5.0155 -1.8916 -0.2317 30 7 3.8555 -1.2868 -0.0834 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6768 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 3.1652 -2.0013 3.1016 39 1 5.3409 -3.1719 2.8985 40 1 7.1363 -2.7315 -1.2695 41 1 8.0340 -5.8369 -0.2462 42 1 8.0258 -5.4198 -1.9765 43 1 9.7765 -7.1030 -1.4741 44 1 10.5082 -5.9898 -0.2940 45 1 12.8062 -5.7024 -2.0704 46 1 15.2591 -7.7777 -2.9668 47 1 11.5246 -3.8418 -1.0656 48 1 11.5167 -3.4245 -2.7963 49 1 9.7738 -2.1585 -1.5680 50 1 9.0418 -3.2717 -2.7485 51 1 5.5231 -1.8488 -1.1841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034659768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:57 Heat of formation + Delta-G solvation = -67.440917 kcal Electronic energy + Delta-G solvation = -29667.773711 eV Core-core repulsion = 25566.002473 eV Total energy + Delta-G solvation = -4101.771238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00314 -40.94010 -39.53126 -38.79527 -36.39406 -34.78434 -34.25397 -33.62848 -32.65266 -31.66721 -31.32009 -28.82639 -28.16278 -25.88847 -25.14046 -24.99475 -23.62132 -22.67196 -22.04042 -21.64218 -20.92331 -19.66939 -19.21233 -18.63713 -18.10846 -17.05800 -16.83203 -16.74943 -16.19483 -16.02562 -15.82428 -15.46629 -15.42295 -15.29830 -15.02950 -14.82172 -14.64332 -14.30927 -14.05791 -13.99495 -13.73769 -13.43916 -13.27160 -13.18588 -13.13947 -13.06080 -12.87419 -12.78647 -12.43175 -12.29456 -12.16505 -12.01286 -11.92937 -11.76890 -11.65528 -11.45862 -11.23335 -11.16603 -11.08159 -10.81734 -10.62145 -10.10870 -9.60821 -8.97286 -7.91729 -5.19612 -0.37622 0.10797 1.47559 1.50440 1.56364 1.78708 1.90318 2.07809 2.58089 2.74771 3.08436 3.41054 3.60071 3.76488 3.78415 3.84838 3.89849 3.92172 3.96251 4.02174 4.06154 4.28070 4.31543 4.39821 4.42691 4.52236 4.56584 4.62192 4.64256 4.68691 4.71462 4.83553 4.85853 4.87636 4.92989 5.01012 5.03905 5.15035 5.16760 5.21323 5.26619 5.28020 5.30632 5.31235 5.47288 5.54120 5.57627 5.66707 6.14495 6.30951 6.51989 6.62756 7.19675 7.36451 8.14864 8.36810 9.31708 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.001638 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.659296 B =17092.788399 C =17318.618879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.165 4.165 4 O -0.306 6.306 5 C 0.337 3.663 6 C -0.198 4.198 7 C 0.012 3.988 8 C -0.237 4.237 9 C 0.567 3.433 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.154 3.846 13 H 0.067 0.933 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.172 3.828 17 H 0.049 0.951 18 N -0.739 5.739 19 C -0.238 4.238 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.281 1.281 27 C -0.113 4.113 28 C -0.106 4.106 29 C 0.188 3.812 30 N -0.551 5.551 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.415 0.585 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.885 20.048 5.604 36.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.222 4.222 4 O -0.213 6.213 5 C 0.159 3.841 6 C -0.218 4.218 7 C -0.013 4.013 8 C -0.243 4.243 9 C 0.355 3.645 10 O -0.460 6.460 11 N -0.355 5.355 12 C 0.049 3.951 13 H 0.085 0.915 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.064 3.936 17 H 0.067 0.933 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.208 1.208 27 C -0.152 4.152 28 C -0.144 4.144 29 C 0.030 3.970 30 N -0.274 5.274 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.253 0.747 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -30.167 19.996 5.637 36.629 hybrid contribution 1.211 -1.373 0.137 1.836 sum -28.956 18.623 5.774 34.909 Atomic orbital electron populations 1.21930 0.91178 1.03243 1.04136 1.22643 0.95767 0.92991 0.86905 1.22196 1.01227 0.95098 1.03689 1.86282 1.31103 1.63808 1.40074 1.20295 0.85773 0.88194 0.89884 1.21226 0.97911 1.02681 1.00018 1.21649 0.91404 0.91538 0.96732 1.20725 0.97900 1.07953 0.97695 1.18189 0.84362 0.79308 0.82606 1.90794 1.68218 1.45296 1.41738 1.45809 1.21871 1.54627 1.13227 1.20876 0.83447 0.91364 0.99410 0.91508 1.21770 0.96728 0.95166 1.01509 1.22028 0.95789 0.99152 0.99420 1.20507 0.86229 0.91358 0.95552 0.93336 1.42667 1.06508 1.31199 1.57460 1.19601 0.94126 1.02962 1.20266 0.90698 1.25531 0.95662 1.02811 1.02985 1.69811 0.99452 1.43500 1.49401 0.85257 0.76079 0.79745 0.78976 1.20203 1.22328 1.20756 1.21648 0.97556 0.94631 1.01395 1.21674 0.94783 0.99709 0.98255 1.23013 0.88508 0.87210 0.98287 1.67338 1.10865 1.24683 1.24537 0.91379 0.88500 0.92078 0.89604 0.91803 0.93322 0.89198 0.81653 0.82837 0.74666 0.93372 0.90401 0.94186 0.94303 0.79749 0.94183 0.92909 0.91400 0.89161 0.89127 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 71.98 0.69 -0.42 16 2 C 0.07 0.84 3.10 30.59 0.09 0.94 16 3 C -0.16 -1.62 9.53 71.98 0.69 -0.94 16 4 O -0.31 -4.84 9.75 -87.99 -0.86 -5.69 16 5 C 0.34 5.66 7.46 84.83 0.63 6.29 16 6 C -0.20 -3.00 10.02 22.43 0.22 -2.78 16 7 C 0.01 0.21 9.70 22.70 0.22 0.43 16 8 C -0.24 -4.25 5.89 -20.00 -0.12 -4.37 16 9 C 0.57 12.98 7.74 86.72 0.67 13.65 16 10 O -0.58 -18.56 16.08 -3.98 -0.06 -18.62 16 11 N -0.70 -12.74 5.03 -445.63 -2.24 -14.99 16 12 C 0.15 3.64 2.45 44.99 0.11 3.75 16 13 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 14 C -0.11 -3.14 5.49 30.60 0.17 -2.98 16 15 C -0.12 -4.48 5.50 30.59 0.17 -4.31 16 16 C 0.17 6.55 2.77 44.99 0.12 6.67 16 17 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 18 N -0.74 -37.33 5.12 -322.94 -1.65 -38.98 16 19 C -0.24 -13.24 9.93 84.03 0.83 -12.41 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 23 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 C -0.11 -3.41 5.39 30.61 0.17 -3.24 16 28 C -0.11 -2.17 5.39 30.61 0.17 -2.01 16 29 C 0.19 2.61 10.71 85.03 0.91 3.52 16 30 N -0.55 -8.87 8.61 -307.82 -2.65 -11.52 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 1.10 6.97 -2.39 -0.02 1.09 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 2.63 7.73 -2.91 -0.02 2.61 16 40 H 0.41 4.29 6.66 -92.70 -0.62 3.67 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.37 20.26 7.80 -92.71 -0.72 19.54 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.19 1.30 6.41 -2.91 -0.02 1.28 16 Total: -1.00 -73.83 414.07 0.65 -73.18 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.40 Total: 30.10 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.21 Total: -2.25 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -6.26 Total: -125.30 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.92 Total: -24.32 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.83 0.65 -73.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.737 kcal (2) G-P(sol) polarization free energy of solvation -73.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds