Wall clock time and date at job start Wed Apr 1 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47185 * 2 1 4 4 C 1.35424 * 117.00103 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79939 * 0.31363 * 4 3 2 6 6 C 1.31885 * 121.79518 * 180.31368 * 5 4 3 7 7 C 1.38349 * 121.19003 * 359.65640 * 6 5 4 8 8 C 1.38345 * 119.45789 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.82436 * 179.97438 * 8 7 6 10 10 C 1.39990 * 118.34551 * 0.02562 * 8 7 6 11 11 C 1.47527 * 120.59475 * 180.02562 * 10 8 7 12 12 O 1.21589 * 120.00062 * 89.99625 * 11 10 8 13 13 N 1.34776 * 120.00049 * 270.00590 * 11 10 8 14 14 C 1.46500 * 120.00164 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46948 * 324.99092 * 14 13 11 16 16 C 1.52998 * 109.47391 * 84.99221 * 14 13 11 17 17 C 1.52998 * 109.47164 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47178 * 300.00289 * 17 16 14 19 19 H 1.09000 * 109.47521 * 299.99961 * 18 17 16 20 20 N 1.46505 * 109.47130 * 179.97438 * 18 17 16 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 18 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 18 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 C 1.53003 * 109.47332 * 60.00127 * 18 17 16 30 30 C 1.52996 * 109.47098 * 204.99599 * 14 13 11 31 31 H 1.08991 * 109.47508 * 60.00057 * 1 2 3 32 32 H 1.09004 * 109.47513 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47075 * 300.00181 * 1 2 3 34 34 H 1.08996 * 109.46687 * 239.99962 * 2 1 3 35 35 H 1.09004 * 109.47223 * 119.99937 * 2 1 3 36 36 H 1.08000 * 119.40001 * 179.67414 * 6 5 4 37 37 H 1.08001 * 120.27640 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.46983 * 270.02029 * 9 8 7 39 39 H 1.08996 * 109.47251 * 30.02151 * 9 8 7 40 40 H 1.09002 * 109.46873 * 150.02344 * 9 8 7 41 41 H 0.97005 * 119.99987 * 359.97438 * 13 11 10 42 42 H 1.08994 * 109.46999 * 300.00238 * 16 14 13 43 43 H 1.09000 * 109.46698 * 60.00593 * 16 14 13 44 44 H 1.08998 * 109.47238 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47096 * 59.99921 * 17 16 14 46 46 H 0.97000 * 119.99792 * 264.99726 * 20 18 17 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.47273 * 59.99808 * 29 18 17 49 49 H 1.09004 * 109.47065 * 180.02562 * 29 18 17 50 50 H 1.09008 * 109.47582 * 59.99881 * 30 14 13 51 51 H 1.09000 * 109.47521 * 299.99731 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6003 -0.0020 7 6 6.0625 1.8473 0.0040 8 6 5.2713 2.9822 0.0048 9 6 5.8912 4.3558 0.0118 10 6 3.8805 2.8228 0.0002 11 6 2.9899 3.9989 0.0003 12 8 2.6262 4.4862 -1.0527 13 7 2.5796 4.5334 1.1675 14 6 1.6948 5.7010 1.1676 15 1 1.9476 6.3486 0.3280 16 6 0.2419 5.2400 1.0366 17 6 -0.6821 6.4594 1.0361 18 6 -0.5082 7.2316 2.3454 19 1 -0.7611 6.5846 3.1853 20 7 -1.3925 8.3997 2.3447 21 6 -2.6955 8.2721 2.7458 22 1 -3.0712 7.3106 3.0631 23 6 -3.5318 9.3801 2.7505 24 7 -3.0738 10.5520 2.3643 25 14 -5.3073 9.2077 3.3051 26 1 -5.3427 8.7254 4.7091 27 1 -5.9836 10.5267 3.2171 28 1 -6.0070 8.2337 2.4294 29 6 0.9448 7.6928 2.4764 30 6 1.8689 6.4727 2.4772 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 6.0819 -0.2851 -0.0025 37 1 7.1390 1.9343 0.0079 38 1 6.0372 4.6833 1.0411 39 1 6.8536 4.3226 -0.4989 40 1 5.2312 5.0548 -0.5018 41 1 2.8696 4.1446 2.0075 42 1 0.1179 4.6902 0.1037 43 1 -0.0109 4.5925 1.8763 44 1 -1.7173 6.1309 0.9432 45 1 -0.4292 7.1066 0.1963 46 1 -1.0549 9.2634 2.0600 47 1 -3.6584 11.3261 2.3673 48 1 1.1978 8.3399 1.6366 49 1 1.0688 8.2426 3.4094 50 1 2.9041 6.8013 2.5706 51 1 1.6161 5.8253 3.3169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034698656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:01 Heat of formation + Delta-G solvation = -47.663833 kcal Electronic energy + Delta-G solvation = -30921.550920 eV Core-core repulsion = 26820.637281 eV Total energy + Delta-G solvation = -4100.913639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29526 -39.64641 -38.50113 -37.80490 -34.80124 -34.26947 -33.00741 -32.40337 -30.80833 -30.36593 -30.16907 -28.51317 -27.29150 -24.70668 -23.89184 -23.44918 -22.34413 -22.01939 -21.16380 -20.48444 -19.48650 -18.39839 -17.88058 -17.41566 -16.93349 -16.71374 -16.16603 -15.57337 -15.18640 -14.75344 -14.50913 -14.29470 -14.26843 -13.90733 -13.67520 -13.56500 -13.53041 -13.34228 -13.07573 -12.92138 -12.81687 -12.52911 -12.52167 -12.29386 -11.98329 -11.81055 -11.77075 -11.42556 -11.06622 -11.01183 -10.78446 -10.73545 -10.66400 -10.41939 -10.17873 -10.07542 -9.96095 -9.73718 -9.71854 -9.53246 -8.94200 -8.88058 -8.80919 -6.90579 -5.72258 -3.00462 0.54270 0.84314 2.48316 2.63221 3.06104 3.30483 3.46507 3.50909 3.51860 3.89195 4.24724 4.49459 4.53382 4.62864 4.68141 4.73241 4.78832 4.92094 5.03744 5.07732 5.08710 5.12394 5.16890 5.32056 5.37356 5.43182 5.55711 5.57555 5.58391 5.65674 5.72916 5.76495 5.80155 5.82670 5.89294 5.92649 6.01648 6.07877 6.27606 6.30388 6.34518 6.54576 6.60717 6.69528 6.77713 6.88732 7.03613 7.19832 7.38560 7.46402 7.73688 8.15555 8.46758 9.57521 10.16502 10.51114 11.50517 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002352 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.500897 B =11900.162077 C =13257.967413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.296 6.296 4 C 0.360 3.640 5 N -0.544 5.544 6 C 0.157 3.843 7 C -0.217 4.217 8 C 0.027 3.973 9 C -0.126 4.126 10 C -0.202 4.202 11 C 0.579 3.421 12 O -0.526 6.526 13 N -0.714 5.714 14 C 0.145 3.855 15 H 0.088 0.912 16 C -0.123 4.123 17 C -0.132 4.132 18 C 0.177 3.823 19 H 0.046 0.954 20 N -0.725 5.725 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 C -0.120 4.120 30 C -0.118 4.118 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.609 -21.780 -2.573 30.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.202 6.202 4 C 0.180 3.820 5 N -0.269 5.269 6 C 0.001 3.999 7 C -0.237 4.237 8 C 0.019 3.981 9 C -0.182 4.182 10 C -0.208 4.208 11 C 0.363 3.637 12 O -0.402 6.402 13 N -0.364 5.364 14 C 0.042 3.958 15 H 0.106 0.894 16 C -0.162 4.162 17 C -0.173 4.173 18 C 0.067 3.933 19 H 0.064 0.936 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.159 4.159 30 C -0.157 4.157 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.517 -22.069 -3.272 30.310 hybrid contribution -0.372 0.417 0.516 0.761 sum 20.145 -21.653 -2.755 29.703 Atomic orbital electron populations 1.21839 0.92599 1.02963 1.03887 1.22683 0.95158 0.80431 1.02473 1.86283 1.16158 1.31237 1.86549 1.19676 0.84449 0.88334 0.89518 1.67422 1.06621 1.32260 1.20555 1.22564 0.89103 0.97475 0.90770 1.21810 1.01433 0.92406 1.08083 1.20190 0.90420 0.97077 0.90376 1.20957 1.01639 0.91971 1.03641 1.19795 0.94191 0.92476 1.14385 1.17675 0.79484 0.82217 0.84311 1.90828 1.56610 1.61548 1.31229 1.46144 1.50011 1.32307 1.07906 1.21151 0.89595 0.85758 0.99298 0.89381 1.21881 0.93758 0.98981 1.01574 1.22221 0.98699 0.95554 1.00787 1.20239 0.88527 0.89889 0.94600 0.93646 1.42423 1.08596 1.06397 1.79153 1.19197 0.87121 0.94517 1.35906 0.91312 1.24734 0.98268 0.95605 1.02478 1.69651 1.35443 0.99199 1.53964 0.86289 0.85105 0.76517 0.78419 1.21346 1.21745 1.21322 1.21760 0.95607 0.96219 1.02298 1.21760 0.99898 0.97774 0.96245 0.91384 0.90155 0.91346 0.91487 0.91445 0.81933 0.83916 0.89572 0.90037 0.90307 0.76914 0.92255 0.92331 0.91834 0.92511 0.78316 0.93529 0.91947 0.91378 0.91895 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.07 0.64 6.03 37.16 0.22 0.87 16 3 O -0.30 -3.76 9.57 -17.96 -0.17 -3.93 16 4 C 0.36 4.36 7.51 -16.61 -0.12 4.23 16 5 N -0.54 -5.65 9.21 -12.98 -0.12 -5.77 16 6 C 0.16 1.17 11.17 -17.49 -0.20 0.97 16 7 C -0.22 -1.49 9.79 -39.50 -0.39 -1.87 16 8 C 0.03 0.25 5.95 -103.93 -0.62 -0.37 16 9 C -0.13 -0.90 9.69 36.01 0.35 -0.55 16 10 C -0.20 -2.40 5.66 -104.69 -0.59 -2.99 16 11 C 0.58 8.05 5.39 -12.47 -0.07 7.99 16 12 O -0.53 -9.48 16.77 5.29 0.09 -9.40 16 13 N -0.71 -8.51 5.07 -54.85 -0.28 -8.78 16 14 C 0.15 1.99 2.45 -67.93 -0.17 1.83 16 15 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 16 C -0.12 -1.92 5.49 -26.73 -0.15 -2.06 16 17 C -0.13 -2.46 5.50 -26.73 -0.15 -2.60 16 18 C 0.18 3.50 2.77 -67.93 -0.19 3.31 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.73 -18.27 5.12 -53.42 -0.27 -18.54 16 21 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 25 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C -0.12 -1.92 5.39 -26.70 -0.14 -2.07 16 30 C -0.12 -1.47 5.39 -26.70 -0.14 -1.62 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.08 0.74 7.19 -51.93 -0.37 0.36 16 41 H 0.40 3.76 8.59 -40.82 -0.35 3.41 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 417.06 15.07 6.29 6.29 Total: -1.00 -34.58 417.06 -9.56 -44.14 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.58 Total: 9.27 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.21 Total: -3.13 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.05 Total: -60.86 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.58 -9.56 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034698656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.523 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds