Wall clock time and date at job start Wed Apr 1 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47185 * 2 1 4 4 C 1.35424 * 117.00103 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79939 * 0.31363 * 4 3 2 6 6 C 1.31885 * 121.79518 * 180.31368 * 5 4 3 7 7 C 1.38349 * 121.19003 * 359.65640 * 6 5 4 8 8 C 1.38345 * 119.45789 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.82436 * 179.97438 * 8 7 6 10 10 C 1.39990 * 118.34551 * 0.02562 * 8 7 6 11 11 C 1.47527 * 120.59475 * 180.02562 * 10 8 7 12 12 O 1.21589 * 120.00062 * 89.99625 * 11 10 8 13 13 N 1.34776 * 120.00049 * 270.00590 * 11 10 8 14 14 C 1.46500 * 120.00164 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46948 * 324.99092 * 14 13 11 16 16 C 1.52998 * 109.47391 * 84.99221 * 14 13 11 17 17 C 1.52998 * 109.47164 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47178 * 300.00289 * 17 16 14 19 19 H 1.09000 * 109.47521 * 299.99961 * 18 17 16 20 20 N 1.46505 * 109.47130 * 179.97438 * 18 17 16 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 18 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 18 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 C 1.53003 * 109.47332 * 60.00127 * 18 17 16 30 30 C 1.52996 * 109.47098 * 204.99599 * 14 13 11 31 31 H 1.08991 * 109.47508 * 60.00057 * 1 2 3 32 32 H 1.09004 * 109.47513 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47075 * 300.00181 * 1 2 3 34 34 H 1.08996 * 109.46687 * 239.99962 * 2 1 3 35 35 H 1.09004 * 109.47223 * 119.99937 * 2 1 3 36 36 H 1.08000 * 119.40001 * 179.67414 * 6 5 4 37 37 H 1.08001 * 120.27640 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.46983 * 270.02029 * 9 8 7 39 39 H 1.08996 * 109.47251 * 30.02151 * 9 8 7 40 40 H 1.09002 * 109.46873 * 150.02344 * 9 8 7 41 41 H 0.97005 * 119.99987 * 359.97438 * 13 11 10 42 42 H 1.08994 * 109.46999 * 300.00238 * 16 14 13 43 43 H 1.09000 * 109.46698 * 60.00593 * 16 14 13 44 44 H 1.08998 * 109.47238 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47096 * 59.99921 * 17 16 14 46 46 H 0.97000 * 119.99792 * 264.99726 * 20 18 17 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.47273 * 59.99808 * 29 18 17 49 49 H 1.09004 * 109.47065 * 180.02562 * 29 18 17 50 50 H 1.09008 * 109.47582 * 59.99881 * 30 14 13 51 51 H 1.09000 * 109.47521 * 299.99731 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6003 -0.0020 7 6 6.0625 1.8473 0.0040 8 6 5.2713 2.9822 0.0048 9 6 5.8912 4.3558 0.0118 10 6 3.8805 2.8228 0.0002 11 6 2.9899 3.9989 0.0003 12 8 2.6262 4.4862 -1.0527 13 7 2.5796 4.5334 1.1675 14 6 1.6948 5.7010 1.1676 15 1 1.9476 6.3486 0.3280 16 6 0.2419 5.2400 1.0366 17 6 -0.6821 6.4594 1.0361 18 6 -0.5082 7.2316 2.3454 19 1 -0.7611 6.5846 3.1853 20 7 -1.3925 8.3997 2.3447 21 6 -2.6955 8.2721 2.7458 22 1 -3.0712 7.3106 3.0631 23 6 -3.5318 9.3801 2.7505 24 7 -3.0738 10.5520 2.3643 25 14 -5.3073 9.2077 3.3051 26 1 -5.3427 8.7254 4.7091 27 1 -5.9836 10.5267 3.2171 28 1 -6.0070 8.2337 2.4294 29 6 0.9448 7.6928 2.4764 30 6 1.8689 6.4727 2.4772 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 6.0819 -0.2851 -0.0025 37 1 7.1390 1.9343 0.0079 38 1 6.0372 4.6833 1.0411 39 1 6.8536 4.3226 -0.4989 40 1 5.2312 5.0548 -0.5018 41 1 2.8696 4.1446 2.0075 42 1 0.1179 4.6902 0.1037 43 1 -0.0109 4.5925 1.8763 44 1 -1.7173 6.1309 0.9432 45 1 -0.4292 7.1066 0.1963 46 1 -1.0549 9.2634 2.0600 47 1 -3.6584 11.3261 2.3673 48 1 1.1978 8.3399 1.6366 49 1 1.0688 8.2426 3.4094 50 1 2.9041 6.8013 2.5706 51 1 1.6161 5.8253 3.3169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034698656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:00 Heat of formation + Delta-G solvation = -72.364405 kcal Electronic energy + Delta-G solvation = -30922.622017 eV Core-core repulsion = 26820.637281 eV Total energy + Delta-G solvation = -4101.984736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08433 -40.73745 -39.37205 -39.03720 -36.37976 -35.01725 -34.56500 -33.20161 -32.40821 -31.70726 -31.10484 -29.25892 -28.71354 -25.90281 -25.04777 -24.57777 -23.66316 -22.88074 -22.36993 -21.57567 -20.92939 -19.24363 -19.11977 -18.64111 -18.12754 -17.62505 -17.20921 -16.88404 -16.23648 -16.04638 -15.54955 -15.38140 -15.30372 -15.15500 -15.04501 -15.00099 -14.54063 -14.14547 -14.11623 -13.97393 -13.63422 -13.46712 -13.43474 -13.21137 -13.18040 -13.09883 -12.89704 -12.80247 -12.52665 -12.47253 -12.32875 -12.18493 -12.05389 -11.78121 -11.68924 -11.49938 -11.33269 -11.20754 -10.84925 -10.66493 -10.54281 -10.10129 -9.58827 -8.99300 -7.93013 -5.21067 -0.14067 0.18162 1.44296 1.46218 1.49376 1.55274 1.90796 2.08143 2.56807 2.61655 3.24073 3.39395 3.63659 3.68277 3.76349 3.84874 3.85683 3.90052 4.02459 4.10094 4.10771 4.27984 4.35452 4.37407 4.38573 4.43353 4.52014 4.58006 4.59102 4.64874 4.68206 4.77282 4.81302 4.84979 4.87531 4.98382 5.06624 5.09476 5.11604 5.15745 5.22444 5.24036 5.26763 5.44164 5.45655 5.50991 5.54515 5.62615 6.15376 6.29623 6.45862 6.72926 7.14314 7.35107 8.12679 8.35491 9.30450 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002352 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.500897 B =11900.162077 C =13257.967413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.323 6.323 4 C 0.339 3.661 5 N -0.557 5.557 6 C 0.157 3.843 7 C -0.202 4.202 8 C 0.023 3.977 9 C -0.124 4.124 10 C -0.229 4.229 11 C 0.583 3.417 12 O -0.578 6.578 13 N -0.698 5.698 14 C 0.153 3.847 15 H 0.068 0.932 16 C -0.110 4.110 17 C -0.121 4.121 18 C 0.173 3.827 19 H 0.047 0.953 20 N -0.738 5.738 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.276 1.276 27 H -0.296 1.296 28 H -0.281 1.281 29 C -0.112 4.112 30 C -0.104 4.104 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.202 0.798 37 H 0.183 0.817 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.413 0.587 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.289 -24.126 -1.126 34.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.231 6.231 4 C 0.161 3.839 5 N -0.281 5.281 6 C 0.001 3.999 7 C -0.222 4.222 8 C 0.015 3.985 9 C -0.180 4.180 10 C -0.235 4.235 11 C 0.369 3.631 12 O -0.457 6.457 13 N -0.348 5.348 14 C 0.049 3.951 15 H 0.086 0.914 16 C -0.150 4.150 17 C -0.162 4.162 18 C 0.065 3.935 19 H 0.065 0.935 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.800 3.200 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.208 1.208 29 C -0.151 4.151 30 C -0.142 4.142 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.219 0.781 37 H 0.200 0.800 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.250 0.750 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.112 0.888 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 23.232 -24.483 -1.782 33.798 hybrid contribution -1.087 1.042 0.026 1.506 sum 22.145 -23.441 -1.756 32.295 Atomic orbital electron populations 1.21860 0.91963 1.04288 1.02810 1.22805 0.95638 0.79566 1.02805 1.86244 1.17109 1.32769 1.86957 1.19822 0.84466 0.88878 0.90764 1.67484 1.07938 1.31644 1.21076 1.23327 0.88367 0.99351 0.88835 1.22231 1.03122 0.91152 1.05658 1.20519 0.89396 0.98777 0.89766 1.21009 1.01927 0.90338 1.04714 1.19761 0.95167 0.91344 1.17224 1.18051 0.79015 0.82304 0.83739 1.90794 1.58612 1.63271 1.33045 1.45932 1.49024 1.31486 1.08370 1.20911 0.88460 0.86214 0.99557 0.91410 1.21732 0.94622 0.97375 1.01246 1.22024 0.98096 0.96424 0.99676 1.20475 0.90053 0.88335 0.94628 0.93537 1.42654 1.08621 1.07465 1.79019 1.19577 0.88366 0.94532 1.34441 0.90846 1.25546 1.02389 0.95476 1.03628 1.69811 1.36639 0.99788 1.55909 0.85251 0.80248 0.76150 0.78385 1.20163 1.22213 1.20771 1.21645 0.93613 0.97764 1.02088 1.21660 1.00655 0.96136 0.95751 0.92759 0.87625 0.92012 0.91510 0.90605 0.78141 0.79997 0.87779 0.87546 0.93099 0.75042 0.93980 0.90938 0.94219 0.94183 0.79656 0.94114 0.92667 0.91166 0.88845 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.07 1.26 6.03 71.98 0.43 1.69 16 3 O -0.32 -8.40 9.57 -87.19 -0.83 -9.23 16 4 C 0.34 8.08 7.51 85.13 0.64 8.72 16 5 N -0.56 -10.62 9.21 -308.00 -2.84 -13.46 16 6 C 0.16 1.79 11.17 84.71 0.95 2.74 16 7 C -0.20 -1.97 9.79 22.32 0.22 -1.75 16 8 C 0.02 0.37 5.95 -19.41 -0.12 0.25 16 9 C -0.12 -1.48 9.69 71.24 0.69 -0.79 16 10 C -0.23 -5.29 5.66 -19.91 -0.11 -5.41 16 11 C 0.58 16.42 5.39 86.69 0.47 16.88 16 12 O -0.58 -21.82 16.77 -4.00 -0.07 -21.89 16 13 N -0.70 -16.08 5.07 -445.72 -2.26 -18.35 16 14 C 0.15 4.12 2.45 44.99 0.11 4.23 16 15 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 16 C -0.11 -3.50 5.49 30.59 0.17 -3.33 16 17 C -0.12 -4.69 5.50 30.59 0.17 -4.52 16 18 C 0.17 6.88 2.77 44.99 0.12 7.00 16 19 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 20 N -0.74 -38.03 5.12 -322.93 -1.65 -39.68 16 21 C -0.24 -13.43 9.93 84.04 0.83 -12.60 16 22 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 25 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 C -0.11 -3.51 5.39 30.61 0.17 -3.35 16 30 C -0.10 -2.35 5.39 30.61 0.17 -2.18 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.08 1.26 8.11 -2.38 -0.02 1.25 16 36 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 40 H 0.05 0.92 7.19 -2.39 -0.02 0.90 16 41 H 0.41 7.00 8.59 -92.70 -0.80 6.21 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.37 20.57 7.80 -92.71 -0.72 19.85 16 47 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 50 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 51 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.13 417.06 0.18 -78.94 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.58 Total: 33.15 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.11 Total: 1.70 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -6.47 Total: -131.79 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.90 Total: -31.12 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -79.13 0.18 -78.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034698656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -79.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds