Wall clock time and date at job start Wed Apr 1 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 O 1.42903 * 109.47044 * 119.99892 * 2 1 3 5 5 C 1.35686 * 117.00103 * 149.99772 * 4 2 1 6 6 C 1.38895 * 119.62422 * 180.27667 * 5 4 2 7 7 C 1.39573 * 118.94253 * 180.22925 * 6 5 4 8 8 C 1.48159 * 120.88797 * 179.77803 * 7 6 5 9 9 O 1.21513 * 120.00246 * 359.72079 * 8 7 6 10 10 N 1.34777 * 120.00065 * 179.71939 * 8 7 6 11 11 C 1.46500 * 120.00270 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 34.99540 * 11 10 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 N 1.46492 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.36942 * 120.00117 * 155.00235 * 17 15 14 19 19 H 1.08004 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00411 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00009 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99684 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47150 * 89.99812 * 22 20 18 24 24 H 1.48504 * 109.47027 * 210.00162 * 22 20 18 25 25 H 1.48507 * 109.47192 * 329.99829 * 22 20 18 26 26 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 27 27 C 1.52999 * 109.46944 * 275.00142 * 11 10 8 28 28 C 1.39965 * 118.22076 * 359.50447 * 7 6 5 29 29 C 1.37980 * 119.12976 * 0.25240 * 28 7 6 30 30 N 1.31902 * 120.98238 * 359.97438 * 29 28 7 31 31 H 1.09002 * 109.46531 * 300.00181 * 1 2 3 32 32 H 1.08999 * 109.47158 * 60.00099 * 1 2 3 33 33 H 1.09002 * 109.47281 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47120 * 239.99413 * 2 1 3 35 35 H 1.09000 * 109.46538 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47214 * 299.99223 * 3 2 1 37 37 H 1.08994 * 109.47425 * 60.00201 * 3 2 1 38 38 H 1.07997 * 120.52455 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00239 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 41 41 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 43 43 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 44 44 H 0.96998 * 120.00353 * 335.00390 * 17 15 14 45 45 H 0.96997 * 119.99334 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47153 * 60.00231 * 26 15 14 47 47 H 1.09001 * 109.47289 * 180.02562 * 26 15 14 48 48 H 1.09000 * 109.47486 * 59.99569 * 27 11 10 49 49 H 1.09002 * 109.46716 * 299.99651 * 27 11 10 50 50 H 1.07998 * 120.43243 * 180.22976 * 28 7 6 51 51 H 1.08008 * 119.50476 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1988 -1.3131 1.0653 6 6 3.7104 -1.9903 2.1648 7 6 4.9405 -2.6391 2.0460 8 6 5.5286 -3.3702 3.1926 9 8 4.9415 -3.4064 4.2558 10 7 6.7149 -3.9952 3.0564 11 6 7.2963 -4.7185 4.1899 12 1 6.4995 -5.1780 4.7749 13 6 8.2401 -5.8054 3.6716 14 6 8.8467 -6.5612 4.8555 15 6 9.6283 -5.5852 5.7373 16 1 10.4252 -5.1256 5.1526 17 7 10.2096 -6.3090 6.8705 18 6 11.3265 -5.8207 7.4945 19 1 11.7791 -4.9023 7.1509 20 6 11.8777 -6.5068 8.5680 21 7 12.9516 -6.0378 9.1674 22 14 11.0962 -8.0965 9.1610 23 1 11.6994 -9.2445 8.4375 24 1 11.3327 -8.2506 10.6189 25 1 9.6351 -8.0580 8.8979 26 6 8.6845 -4.4983 6.2556 27 6 8.0779 -3.7421 5.0712 28 6 5.6007 -2.5855 0.8130 29 6 5.0196 -1.8947 -0.2306 30 7 3.8574 -1.2893 -0.0805 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 3.1666 -2.0117 3.0976 39 1 7.1839 -3.9661 2.2078 40 1 9.0369 -5.3459 3.0866 41 1 7.6832 -6.5010 3.0437 42 1 8.0498 -7.0206 5.4401 43 1 9.5195 -7.3352 4.4861 44 1 9.8034 -7.1340 7.1789 45 1 13.3364 -6.5171 9.9178 46 1 7.8874 -4.9578 6.8403 47 1 9.2413 -3.8027 6.8835 48 1 7.4054 -2.9678 5.4406 49 1 8.8746 -3.2827 4.4862 50 1 6.5526 -3.0781 0.6803 51 1 5.5240 -1.8491 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034774905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:11 Heat of formation + Delta-G solvation = -39.027179 kcal Electronic energy + Delta-G solvation = -29714.103632 eV Core-core repulsion = 25613.564507 eV Total energy + Delta-G solvation = -4100.539125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29867 -40.08562 -38.64297 -37.93266 -35.11626 -33.79074 -33.44224 -32.71058 -31.02376 -30.52567 -30.48590 -27.94874 -27.71144 -25.32549 -23.81596 -23.33967 -22.57059 -22.13035 -20.97834 -20.61898 -19.80795 -18.97295 -17.67876 -17.45679 -16.95903 -16.17246 -16.10416 -16.01511 -15.28832 -15.08667 -14.84755 -14.76184 -14.40918 -14.25083 -14.04585 -13.88166 -13.63104 -13.44263 -12.96450 -12.82260 -12.76564 -12.67993 -12.42944 -12.38776 -12.19978 -12.01398 -11.78168 -11.41710 -11.26682 -11.19963 -10.93109 -10.89354 -10.73561 -10.42861 -10.34044 -10.26938 -10.16893 -9.92521 -9.85476 -9.56889 -9.12690 -8.97094 -8.88647 -7.25565 -5.76166 -3.11464 0.29756 0.69549 2.42981 2.59809 2.92649 3.38515 3.41631 3.42865 3.46434 3.79327 4.17770 4.39708 4.48466 4.51017 4.53839 4.60150 4.61308 4.78904 4.79206 4.91052 5.06779 5.09250 5.20288 5.27844 5.29271 5.32659 5.37954 5.44316 5.48018 5.51516 5.58654 5.60709 5.64835 5.72458 5.72827 5.75715 5.87377 5.92291 6.05842 6.12522 6.15346 6.32577 6.41550 6.47588 6.61278 6.83068 6.87909 7.03685 7.23445 7.34404 7.91862 8.00585 8.43173 9.22020 9.94743 10.14558 11.42247 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.001655 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.065161 B =16911.841559 C =17060.768748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.324 3.676 6 C -0.135 4.135 7 C -0.049 4.049 8 C 0.556 3.444 9 O -0.522 6.522 10 N -0.714 5.714 11 C 0.144 3.856 12 H 0.090 0.910 13 C -0.119 4.119 14 C -0.124 4.124 15 C 0.181 3.819 16 H 0.055 0.945 17 N -0.749 5.749 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.184 4.184 29 C 0.139 3.861 30 N -0.528 5.528 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.154 0.846 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.142 0.858 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.938 10.237 -25.154 34.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.227 4.227 4 O -0.206 6.206 5 C 0.145 3.855 6 C -0.156 4.156 7 C -0.060 4.060 8 C 0.342 3.658 9 O -0.398 6.398 10 N -0.365 5.365 11 C 0.041 3.959 12 H 0.108 0.892 13 C -0.157 4.157 14 C -0.163 4.163 15 C 0.072 3.928 16 H 0.074 0.926 17 N -0.391 5.391 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.173 4.173 27 C -0.164 4.164 28 C -0.205 4.205 29 C -0.016 4.016 30 N -0.253 5.253 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.172 0.828 39 H 0.234 0.766 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.160 0.840 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.693 10.801 -24.757 35.278 hybrid contribution 0.209 -1.397 0.636 1.549 sum -22.484 9.404 -24.121 34.290 Atomic orbital electron populations 1.21920 0.92724 1.03124 1.03120 1.22387 0.94568 0.92782 0.87763 1.22222 1.02152 0.95545 1.02741 1.86334 1.31271 1.64206 1.38799 1.19645 0.86372 0.90181 0.89341 1.21158 0.96039 0.98834 0.99595 1.20190 0.94428 0.97085 0.94254 1.18071 0.81302 0.79210 0.87254 1.90818 1.61147 1.60115 1.27752 1.46048 1.20969 1.53557 1.15933 1.21203 0.95948 0.92223 0.86552 0.89194 1.21742 0.98329 0.96933 0.98722 1.21794 0.99780 0.98743 0.95982 1.20219 0.93194 0.90986 0.88401 0.92650 1.42790 1.32636 1.27261 1.36435 1.19081 1.01157 1.07066 1.09914 0.89235 1.24670 0.97525 0.98643 0.98346 1.69703 1.23018 1.40467 1.25064 0.86553 0.79014 0.84835 0.78147 1.21149 1.21808 1.20295 1.22205 0.99433 0.99217 0.96491 1.21916 0.99013 0.98026 0.97433 1.22158 1.02118 1.03025 0.93213 1.22375 0.89457 0.90969 0.98837 1.67143 1.10569 1.23037 1.24522 0.91500 0.90391 0.91749 0.89196 0.91972 0.91003 0.91856 0.82792 0.76607 0.91230 0.91681 0.92030 0.91160 0.80693 0.93107 0.92546 0.91225 0.92118 0.91971 0.83990 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.56 37.16 0.36 -0.45 16 2 C 0.08 0.59 3.11 -26.73 -0.08 0.51 16 3 C -0.17 -1.08 9.53 37.16 0.35 -0.72 16 4 O -0.30 -2.94 9.76 -18.76 -0.18 -3.12 16 5 C 0.32 3.27 7.45 -17.16 -0.13 3.14 16 6 C -0.13 -1.43 9.61 -38.84 -0.37 -1.80 16 7 C -0.05 -0.48 5.91 -104.68 -0.62 -1.10 16 8 C 0.56 6.62 7.76 -12.19 -0.09 6.52 16 9 O -0.52 -8.29 16.10 5.35 0.09 -8.20 16 10 N -0.71 -7.00 5.04 -54.65 -0.28 -7.27 16 11 C 0.14 1.73 2.45 -67.93 -0.17 1.56 16 12 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 13 C -0.12 -1.28 5.39 -26.73 -0.14 -1.43 16 14 C -0.12 -1.77 5.39 -26.73 -0.14 -1.91 16 15 C 0.18 3.30 2.77 -67.94 -0.19 3.11 16 16 H 0.06 1.04 8.08 -51.93 -0.42 0.63 16 17 N -0.75 -17.34 4.93 -53.43 -0.26 -17.61 16 18 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 22 Si 0.88 22.10 27.74 -169.99 -4.71 17.39 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 26 C -0.13 -2.28 5.50 -26.70 -0.15 -2.43 16 27 C -0.12 -1.74 5.50 -26.70 -0.15 -1.88 16 28 C -0.18 -1.25 9.61 -39.03 -0.38 -1.62 16 29 C 0.14 0.93 11.17 -17.62 -0.20 0.73 16 30 N -0.53 -4.71 8.61 -13.38 -0.12 -4.83 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.67 6.98 -51.93 -0.36 0.31 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.15 1.71 7.74 -52.49 -0.41 1.30 16 39 H 0.40 2.62 6.74 -40.82 -0.28 2.35 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.14 0.54 6.53 -52.49 -0.34 0.19 16 51 H 0.17 0.56 8.06 -52.48 -0.42 0.13 16 LS Contribution 411.23 15.07 6.20 6.20 Total: -1.00 -34.32 411.23 -9.21 -43.52 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.36 Total: 7.12 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.35 Total: -4.67 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.12 Total: -58.23 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.10 Total: -11.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.32 -9.21 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034774905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.494 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds