Wall clock time and date at job start Wed Apr 1 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 O 1.42903 * 109.47044 * 119.99892 * 2 1 3 5 5 C 1.35686 * 117.00103 * 149.99772 * 4 2 1 6 6 C 1.38895 * 119.62422 * 180.27667 * 5 4 2 7 7 C 1.39573 * 118.94253 * 180.22925 * 6 5 4 8 8 C 1.48159 * 120.88797 * 179.77803 * 7 6 5 9 9 O 1.21513 * 120.00246 * 359.72079 * 8 7 6 10 10 N 1.34777 * 120.00065 * 179.71939 * 8 7 6 11 11 C 1.46500 * 120.00270 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 34.99540 * 11 10 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 N 1.46492 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.36942 * 120.00117 * 155.00235 * 17 15 14 19 19 H 1.08004 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00411 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00009 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99684 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47150 * 89.99812 * 22 20 18 24 24 H 1.48504 * 109.47027 * 210.00162 * 22 20 18 25 25 H 1.48507 * 109.47192 * 329.99829 * 22 20 18 26 26 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 27 27 C 1.52999 * 109.46944 * 275.00142 * 11 10 8 28 28 C 1.39965 * 118.22076 * 359.50447 * 7 6 5 29 29 C 1.37980 * 119.12976 * 0.25240 * 28 7 6 30 30 N 1.31902 * 120.98238 * 359.97438 * 29 28 7 31 31 H 1.09002 * 109.46531 * 300.00181 * 1 2 3 32 32 H 1.08999 * 109.47158 * 60.00099 * 1 2 3 33 33 H 1.09002 * 109.47281 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47120 * 239.99413 * 2 1 3 35 35 H 1.09000 * 109.46538 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47214 * 299.99223 * 3 2 1 37 37 H 1.08994 * 109.47425 * 60.00201 * 3 2 1 38 38 H 1.07997 * 120.52455 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00239 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 41 41 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 43 43 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 44 44 H 0.96998 * 120.00353 * 335.00390 * 17 15 14 45 45 H 0.96997 * 119.99334 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47153 * 60.00231 * 26 15 14 47 47 H 1.09001 * 109.47289 * 180.02562 * 26 15 14 48 48 H 1.09000 * 109.47486 * 59.99569 * 27 11 10 49 49 H 1.09002 * 109.46716 * 299.99651 * 27 11 10 50 50 H 1.07998 * 120.43243 * 180.22976 * 28 7 6 51 51 H 1.08008 * 119.50476 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1988 -1.3131 1.0653 6 6 3.7104 -1.9903 2.1648 7 6 4.9405 -2.6391 2.0460 8 6 5.5286 -3.3702 3.1926 9 8 4.9415 -3.4064 4.2558 10 7 6.7149 -3.9952 3.0564 11 6 7.2963 -4.7185 4.1899 12 1 6.4995 -5.1780 4.7749 13 6 8.2401 -5.8054 3.6716 14 6 8.8467 -6.5612 4.8555 15 6 9.6283 -5.5852 5.7373 16 1 10.4252 -5.1256 5.1526 17 7 10.2096 -6.3090 6.8705 18 6 11.3265 -5.8207 7.4945 19 1 11.7791 -4.9023 7.1509 20 6 11.8777 -6.5068 8.5680 21 7 12.9516 -6.0378 9.1674 22 14 11.0962 -8.0965 9.1610 23 1 11.6994 -9.2445 8.4375 24 1 11.3327 -8.2506 10.6189 25 1 9.6351 -8.0580 8.8979 26 6 8.6845 -4.4983 6.2556 27 6 8.0779 -3.7421 5.0712 28 6 5.6007 -2.5855 0.8130 29 6 5.0196 -1.8947 -0.2306 30 7 3.8574 -1.2893 -0.0805 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 3.1666 -2.0117 3.0976 39 1 7.1839 -3.9661 2.2078 40 1 9.0369 -5.3459 3.0866 41 1 7.6832 -6.5010 3.0437 42 1 8.0498 -7.0206 5.4401 43 1 9.5195 -7.3352 4.4861 44 1 9.8034 -7.1340 7.1789 45 1 13.3364 -6.5171 9.9178 46 1 7.8874 -4.9578 6.8403 47 1 9.2413 -3.8027 6.8835 48 1 7.4054 -2.9678 5.4406 49 1 8.8746 -3.2827 4.4862 50 1 6.5526 -3.0781 0.6803 51 1 5.5240 -1.8491 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034774905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:10 Heat of formation + Delta-G solvation = -63.432187 kcal Electronic energy + Delta-G solvation = -29715.161913 eV Core-core repulsion = 25613.564507 eV Total energy + Delta-G solvation = -4101.597406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.00386 -40.98817 -39.55077 -38.91446 -36.53796 -34.86393 -34.25628 -33.77549 -32.74562 -31.69570 -31.18706 -29.34027 -28.17848 -26.25998 -25.03357 -24.39948 -23.72005 -23.03361 -22.15879 -21.48494 -21.07084 -19.92104 -19.37351 -18.30281 -17.76092 -16.93209 -16.90329 -16.80644 -16.66897 -16.26955 -16.02806 -15.54981 -15.42059 -15.10017 -15.03215 -14.89727 -14.80783 -14.61162 -14.35022 -14.12600 -13.66567 -13.40733 -13.29705 -13.20325 -13.10479 -13.01196 -12.91284 -12.87132 -12.42460 -12.32714 -12.06072 -12.00584 -11.94128 -11.80720 -11.78045 -11.48863 -11.32783 -11.21284 -11.07528 -10.88235 -10.66373 -10.12335 -9.59096 -9.28335 -8.00759 -5.33277 -0.42448 0.08026 1.38612 1.41726 1.48899 1.71998 1.76197 2.15714 2.49849 2.74854 3.22650 3.30342 3.43225 3.62253 3.74626 3.85552 3.86072 3.88618 3.98690 4.02151 4.04974 4.24894 4.26896 4.31960 4.36144 4.50379 4.58656 4.60410 4.62448 4.68410 4.70137 4.82469 4.83478 4.85360 4.87849 4.94486 4.97486 5.10358 5.14451 5.19155 5.24496 5.24722 5.27043 5.34499 5.42082 5.51258 5.60697 5.80294 6.21734 6.24123 6.43338 6.72424 7.08173 7.10690 7.88253 8.06290 9.20931 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.001655 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.065161 B =16911.841559 C =17060.768748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.164 4.164 4 O -0.318 6.318 5 C 0.311 3.689 6 C -0.158 4.158 7 C -0.059 4.059 8 C 0.556 3.444 9 O -0.571 6.571 10 N -0.695 5.695 11 C 0.151 3.849 12 H 0.071 0.929 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.174 3.826 16 H 0.049 0.951 17 N -0.753 5.753 18 C -0.226 4.226 19 H 0.056 0.944 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.954 3.046 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.254 1.254 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.166 4.166 29 C 0.143 3.857 30 N -0.534 5.534 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.134 0.866 39 H 0.419 0.581 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.364 0.636 45 H 0.256 0.744 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.076 0.924 50 H 0.181 0.819 51 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.832 9.189 -28.912 37.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.222 4.222 4 O -0.226 6.226 5 C 0.133 3.867 6 C -0.180 4.180 7 C -0.070 4.070 8 C 0.343 3.657 9 O -0.451 6.451 10 N -0.347 5.347 11 C 0.047 3.953 12 H 0.089 0.911 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.066 3.934 16 H 0.068 0.932 17 N -0.396 5.396 18 C -0.357 4.357 19 H 0.074 0.926 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.179 1.179 26 C -0.166 4.166 27 C -0.154 4.154 28 C -0.187 4.187 29 C -0.013 4.013 30 N -0.258 5.258 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.152 0.848 39 H 0.258 0.742 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.197 0.803 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.198 0.802 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -23.623 9.764 -28.599 38.357 hybrid contribution 0.516 -0.943 1.714 2.023 sum -23.107 8.821 -26.885 36.531 Atomic orbital electron populations 1.21938 0.91402 1.03162 1.04046 1.22609 0.95624 0.92918 0.86922 1.22194 1.01220 0.95215 1.03548 1.86312 1.31483 1.64534 1.40228 1.19659 0.86756 0.90649 0.89607 1.21097 0.96998 1.00538 0.99369 1.20070 0.94531 0.97602 0.94816 1.18410 0.81369 0.78785 0.87137 1.90799 1.62551 1.61909 1.29819 1.45773 1.20260 1.52454 1.16166 1.20965 0.95419 0.92044 0.86898 0.91113 1.21673 0.98635 0.96613 0.97547 1.21703 0.99391 0.98078 0.96430 1.20497 0.93464 0.91924 0.87469 0.93241 1.42847 1.31552 1.27702 1.37487 1.19050 1.01805 1.05459 1.09415 0.92565 1.25492 0.98460 1.02752 0.99061 1.69888 1.25221 1.42482 1.26070 0.85414 0.79246 0.80286 0.76846 1.20126 1.22692 1.17921 1.22031 0.98646 0.98540 0.97401 1.21790 0.99187 0.97816 0.96612 1.22543 1.02852 1.01848 0.91429 1.23139 0.88504 0.89325 1.00306 1.67234 1.11473 1.23320 1.23781 0.91817 0.88172 0.92157 0.89344 0.93305 0.88927 0.92283 0.84799 0.74175 0.89090 0.88654 0.92017 0.90436 0.80283 0.93505 0.93450 0.94541 0.93538 0.90522 0.80188 0.77595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.56 71.98 0.69 -0.78 16 2 C 0.07 1.05 3.11 30.60 0.10 1.14 16 3 C -0.16 -1.97 9.53 71.98 0.69 -1.28 16 4 O -0.32 -6.43 9.76 -90.05 -0.88 -7.31 16 5 C 0.31 6.28 7.45 84.80 0.63 6.91 16 6 C -0.16 -3.45 9.61 22.75 0.22 -3.24 16 7 C -0.06 -1.09 5.91 -19.90 -0.12 -1.20 16 8 C 0.56 12.64 7.76 86.88 0.67 13.32 16 9 O -0.57 -18.58 16.10 -3.76 -0.06 -18.64 16 10 N -0.69 -11.55 5.04 -445.11 -2.24 -13.79 16 11 C 0.15 3.27 2.45 44.99 0.11 3.38 16 12 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.11 -1.86 5.39 30.59 0.16 -1.69 16 14 C -0.12 -3.01 5.39 30.60 0.16 -2.84 16 15 C 0.17 6.18 2.77 44.99 0.12 6.30 16 16 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 17 N -0.75 -34.53 4.93 -322.95 -1.59 -36.12 16 18 C -0.23 -12.85 10.41 84.03 0.87 -11.97 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 22 Si 0.95 45.84 27.74 68.60 1.90 47.75 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 25 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 26 C -0.13 -4.36 5.50 30.61 0.17 -4.19 16 27 C -0.11 -3.09 5.50 30.61 0.17 -2.93 16 28 C -0.17 -1.63 9.61 22.63 0.22 -1.41 16 29 C 0.14 1.38 11.17 84.62 0.94 2.32 16 30 N -0.53 -8.56 8.61 -309.13 -2.66 -11.22 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 1.24 6.98 -2.39 -0.02 1.22 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.13 3.33 7.74 -2.91 -0.02 3.31 16 39 H 0.42 3.48 6.74 -92.71 -0.62 2.85 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.36 16.09 5.66 -92.71 -0.52 15.56 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.18 0.29 6.53 -2.91 -0.02 0.28 16 51 H 0.21 0.26 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -79.87 411.23 0.78 -79.09 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.27 Total: 25.26 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.28 Total: -1.63 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -6.19 Total: -124.51 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.94 Total: -25.95 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.75 kcal Total: -79.87 0.78 -79.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034774905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.656 kcal (2) G-P(sol) polarization free energy of solvation -79.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds