Wall clock time and date at job start Wed Apr 1 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46967 * 2 1 4 4 C 1.35423 * 116.99853 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80176 * 359.72693 * 4 3 2 6 6 C 1.31880 * 121.80194 * 179.74941 * 5 4 3 7 7 C 1.50700 * 119.41149 * 180.29379 * 6 5 4 8 8 C 1.38353 * 121.18416 * 0.53174 * 6 5 4 9 9 C 1.38338 * 119.46131 * 359.74279 * 8 6 5 10 10 C 1.39994 * 118.34485 * 359.97438 * 9 8 6 11 11 C 1.47526 * 120.59430 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99907 * 227.95888 * 11 10 9 13 13 N 1.34772 * 120.00157 * 47.95375 * 11 10 9 14 14 C 1.46929 * 120.63111 * 5.29591 * 13 11 10 15 15 C 1.53622 * 108.54522 * 126.36241 * 14 13 11 16 16 C 1.53045 * 109.24070 * 54.85647 * 15 14 13 17 17 H 1.08998 * 109.46205 * 178.48531 * 16 15 14 18 18 N 1.46505 * 109.45986 * 58.52918 * 16 15 14 19 19 C 1.36935 * 119.99736 * 84.92890 * 18 16 15 20 20 H 1.07996 * 120.00405 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99599 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47136 * 60.00288 * 23 21 19 25 25 H 1.48500 * 109.47196 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47392 * 300.00567 * 23 21 19 27 27 C 1.53041 * 109.53761 * 298.51305 * 16 15 14 28 28 H 1.09001 * 109.49346 * 301.40892 * 27 16 15 29 29 C 1.53003 * 109.49525 * 181.31436 * 27 16 15 30 30 C 1.46926 * 120.63157 * 185.56646 * 13 11 10 31 31 H 1.08997 * 109.46907 * 59.99761 * 1 2 3 32 32 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46700 * 299.99591 * 1 2 3 34 34 H 1.09004 * 109.46856 * 240.00790 * 2 1 3 35 35 H 1.08991 * 109.47307 * 120.00304 * 2 1 3 36 36 H 1.08996 * 109.47193 * 270.23781 * 7 6 5 37 37 H 1.09003 * 109.46734 * 30.23432 * 7 6 5 38 38 H 1.08994 * 109.47547 * 150.22997 * 7 6 5 39 39 H 1.08002 * 120.27283 * 179.71415 * 8 6 5 40 40 H 1.07999 * 120.83027 * 180.02562 * 9 8 6 41 41 H 1.09004 * 109.58362 * 246.20119 * 14 13 11 42 42 H 1.09002 * 109.58573 * 6.61856 * 14 13 11 43 43 H 1.08999 * 109.63563 * 294.86762 * 15 14 13 44 44 H 1.08997 * 109.45924 * 174.73968 * 15 14 13 45 45 H 0.97002 * 120.00238 * 264.93677 * 18 16 15 46 46 H 0.97005 * 119.99537 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47523 * 300.16159 * 29 27 16 48 48 H 1.09002 * 109.46746 * 60.16348 * 29 27 16 49 49 H 1.09001 * 109.46894 * 180.15815 * 29 27 16 50 50 H 1.08993 * 109.58529 * 353.38427 * 30 13 11 51 51 H 1.09006 * 109.57992 * 113.79995 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4733 0.0044 6 6 5.4634 0.6003 -0.0008 7 6 6.3265 -0.6351 -0.0014 8 6 6.0625 1.8474 -0.0008 9 6 5.2714 2.9822 -0.0006 10 6 3.8805 2.8229 -0.0010 11 6 2.9900 3.9990 -0.0003 12 8 2.0607 4.0574 0.7816 13 7 3.2066 5.0088 -0.8662 14 6 4.2521 4.9031 -1.8931 15 6 3.6204 5.1866 -3.2644 16 6 2.9148 6.5440 -3.2238 17 1 2.4882 6.7610 -4.2031 18 7 3.8819 7.5865 -2.8713 19 6 4.6533 8.1624 -3.8451 20 1 4.5485 7.8484 -4.8731 21 6 5.5693 9.1505 -3.5112 22 7 5.6967 9.5335 -2.2584 23 14 6.6211 9.9366 -4.8398 24 1 5.7434 10.5864 -5.8461 25 1 7.5119 10.9551 -4.2280 26 1 7.4445 8.8928 -5.5016 27 6 1.7984 6.5094 -2.1775 28 1 1.0916 5.7176 -2.4258 29 6 1.0724 7.8562 -2.1607 30 6 2.4056 6.2387 -0.7975 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 6.5350 -0.9332 1.0261 37 1 5.8047 -1.4425 -0.5152 38 1 7.2639 -0.4232 -0.5156 39 1 7.1390 1.9343 -0.0004 40 1 5.7156 3.9666 -0.0010 41 1 5.0372 5.6320 -1.6915 42 1 4.6730 3.8977 -1.8839 43 1 2.8965 4.4073 -3.5024 44 1 4.3996 5.2043 -4.0264 45 1 3.9759 7.8687 -1.9480 46 1 6.3371 10.2238 -2.0250 47 1 1.7802 8.6475 -1.9139 48 1 0.6405 8.0483 -3.1429 49 1 0.2793 7.8320 -1.4134 50 1 1.6080 6.1147 -0.0651 51 1 3.0433 7.0742 -0.5084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036236103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:05 Heat of formation + Delta-G solvation = -27.379495 kcal Electronic energy + Delta-G solvation = -31996.016987 eV Core-core repulsion = 27895.982943 eV Total energy + Delta-G solvation = -4100.034044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11222 -39.59972 -38.28655 -37.52008 -34.36702 -33.43620 -32.63440 -32.28110 -31.35837 -31.07793 -29.16414 -28.28413 -26.19309 -24.96833 -24.04969 -23.52685 -22.93128 -22.27101 -21.60675 -20.06075 -18.53293 -18.22369 -17.38460 -17.01349 -16.77355 -16.44225 -15.74722 -14.96733 -14.86084 -14.60887 -14.39820 -14.24355 -14.19158 -13.95057 -13.79675 -13.36176 -13.26719 -13.19382 -12.81421 -12.75767 -12.61823 -12.52174 -12.31904 -12.18541 -12.05950 -11.64417 -11.55599 -11.35158 -11.18352 -10.90671 -10.84488 -10.78581 -10.46991 -10.46795 -10.22835 -10.11832 -9.87539 -9.82318 -9.54709 -9.41823 -8.92844 -8.54722 -8.16210 -6.98380 -5.80076 -3.08268 0.68863 1.13133 2.81105 2.93828 3.24482 3.40732 3.46280 3.46681 3.63013 3.93544 4.53160 4.56465 4.64165 4.80557 4.85484 4.90348 5.02335 5.12242 5.21169 5.23578 5.29389 5.30638 5.35551 5.40043 5.51966 5.55421 5.59487 5.67486 5.68111 5.74429 5.77202 5.84324 5.89992 5.92525 5.97202 6.09141 6.10767 6.25222 6.26507 6.33983 6.42983 6.52756 6.66034 6.70245 6.79146 6.95055 7.03200 7.13888 7.61916 7.67352 7.75861 8.38635 8.43507 9.50174 10.07072 10.42597 11.42286 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003210 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.080788 B = 8720.834794 C =10131.783047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.285 6.285 4 C 0.370 3.630 5 N -0.545 5.545 6 C 0.183 3.817 7 C -0.106 4.106 8 C -0.216 4.216 9 C -0.004 4.004 10 C -0.201 4.201 11 C 0.569 3.431 12 O -0.535 6.535 13 N -0.596 5.596 14 C 0.111 3.889 15 C -0.149 4.149 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.108 4.108 28 H 0.066 0.934 29 C -0.137 4.137 30 C 0.121 3.879 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 -19.819 4.311 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.191 6.191 4 C 0.190 3.810 5 N -0.271 5.271 6 C 0.045 3.955 7 C -0.163 4.163 8 C -0.237 4.237 9 C -0.029 4.029 10 C -0.207 4.207 11 C 0.356 3.644 12 O -0.413 6.413 13 N -0.328 5.328 14 C -0.011 4.011 15 C -0.190 4.190 16 C 0.069 3.931 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.128 4.128 28 H 0.084 0.916 29 C -0.195 4.195 30 C -0.001 4.001 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.009 -20.330 4.581 21.222 hybrid contribution 1.240 1.174 -0.571 1.800 sum -2.769 -19.157 4.011 19.767 Atomic orbital electron populations 1.21806 0.92904 1.02605 1.03704 1.22640 0.95029 0.81056 1.02268 1.86373 1.16065 1.30336 1.86320 1.19595 0.84258 0.88257 0.88858 1.67210 1.06013 1.32450 1.21386 1.21106 0.88720 0.95297 0.90352 1.20789 0.98026 0.94128 1.03388 1.21737 1.01619 0.92115 1.08201 1.21728 0.90890 1.00363 0.89926 1.19892 0.94542 0.92478 1.13829 1.17767 0.83850 0.81810 0.80982 1.90758 1.30811 1.79380 1.40316 1.48012 1.36436 1.16278 1.32031 1.21959 0.90230 1.01353 0.87584 1.22587 1.00598 0.99688 0.96110 1.20211 0.89073 0.88089 0.95754 0.93156 1.42471 1.43170 1.42189 1.08251 1.19178 1.13422 1.14623 0.89599 0.91338 1.24695 1.00219 0.99726 0.96112 1.69640 1.39108 1.33590 1.15782 0.86319 0.80224 0.78928 0.80985 1.21387 1.21821 1.21389 1.21698 0.97574 0.98007 0.95543 0.91600 1.21664 0.99718 0.97129 1.00954 1.21658 0.95287 0.85311 0.97842 0.91585 0.90405 0.91420 0.91692 0.91635 0.89978 0.90344 0.90102 0.83872 0.83187 0.89611 0.91249 0.93379 0.90817 0.78093 0.93491 0.91039 0.92847 0.93749 0.89705 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.07 0.74 6.03 37.16 0.22 0.97 16 3 O -0.29 -4.42 9.15 -27.88 -0.26 -4.67 16 4 C 0.37 5.63 7.48 -16.61 -0.12 5.50 16 5 N -0.55 -7.19 9.11 -9.21 -0.08 -7.27 16 6 C 0.18 1.98 6.78 -82.53 -0.56 1.42 16 7 C -0.11 -0.74 10.16 36.01 0.37 -0.37 16 8 C -0.22 -2.26 9.71 -39.50 -0.38 -2.64 16 9 C 0.00 -0.04 7.66 -38.89 -0.30 -0.34 16 10 C -0.20 -3.11 4.87 -104.69 -0.51 -3.62 16 11 C 0.57 10.15 6.98 -12.48 -0.09 10.07 16 12 O -0.53 -11.07 15.92 -4.63 -0.07 -11.14 16 13 N -0.60 -10.16 2.97 -173.74 -0.52 -10.67 16 14 C 0.11 1.81 5.04 -3.49 -0.02 1.79 16 15 C -0.15 -2.53 5.80 -26.39 -0.15 -2.68 16 16 C 0.18 3.37 2.53 -67.88 -0.17 3.20 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -16.37 3.63 -53.38 -0.19 -16.56 16 19 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 20 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 23 Si 0.90 21.57 29.55 -169.99 -5.02 16.54 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.11 -1.83 2.67 -90.50 -0.24 -2.07 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 C -0.14 -2.24 9.06 37.16 0.34 -1.90 16 30 C 0.12 2.11 5.43 -3.71 -0.02 2.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.15 1.78 7.34 -52.49 -0.39 1.39 16 41 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 42 H 0.07 1.01 5.09 -51.93 -0.26 0.75 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.38 9.35 5.92 -40.82 -0.24 9.11 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 51 H 0.08 1.43 6.64 -51.93 -0.34 1.09 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -31.60 405.84 -9.08 -40.67 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.27 Total: 9.30 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.50 Total: 3.70 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.07 Total: -60.51 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.33 Total: -15.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.60 -9.08 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036236103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.293 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds