Wall clock time and date at job start Wed Apr 1 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46967 * 2 1 4 4 C 1.35423 * 116.99853 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80176 * 359.72693 * 4 3 2 6 6 C 1.31880 * 121.80194 * 179.74941 * 5 4 3 7 7 C 1.50700 * 119.41149 * 180.29379 * 6 5 4 8 8 C 1.38353 * 121.18416 * 0.53174 * 6 5 4 9 9 C 1.38338 * 119.46131 * 359.74279 * 8 6 5 10 10 C 1.39994 * 118.34485 * 359.97438 * 9 8 6 11 11 C 1.47526 * 120.59430 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99907 * 227.95888 * 11 10 9 13 13 N 1.34772 * 120.00157 * 47.95375 * 11 10 9 14 14 C 1.46929 * 120.63111 * 5.29591 * 13 11 10 15 15 C 1.53622 * 108.54522 * 126.36241 * 14 13 11 16 16 C 1.53045 * 109.24070 * 54.85647 * 15 14 13 17 17 H 1.08998 * 109.46205 * 178.48531 * 16 15 14 18 18 N 1.46505 * 109.45986 * 58.52918 * 16 15 14 19 19 C 1.36935 * 119.99736 * 84.92890 * 18 16 15 20 20 H 1.07996 * 120.00405 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99599 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47136 * 60.00288 * 23 21 19 25 25 H 1.48500 * 109.47196 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47392 * 300.00567 * 23 21 19 27 27 C 1.53041 * 109.53761 * 298.51305 * 16 15 14 28 28 H 1.09001 * 109.49346 * 301.40892 * 27 16 15 29 29 C 1.53003 * 109.49525 * 181.31436 * 27 16 15 30 30 C 1.46926 * 120.63157 * 185.56646 * 13 11 10 31 31 H 1.08997 * 109.46907 * 59.99761 * 1 2 3 32 32 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46700 * 299.99591 * 1 2 3 34 34 H 1.09004 * 109.46856 * 240.00790 * 2 1 3 35 35 H 1.08991 * 109.47307 * 120.00304 * 2 1 3 36 36 H 1.08996 * 109.47193 * 270.23781 * 7 6 5 37 37 H 1.09003 * 109.46734 * 30.23432 * 7 6 5 38 38 H 1.08994 * 109.47547 * 150.22997 * 7 6 5 39 39 H 1.08002 * 120.27283 * 179.71415 * 8 6 5 40 40 H 1.07999 * 120.83027 * 180.02562 * 9 8 6 41 41 H 1.09004 * 109.58362 * 246.20119 * 14 13 11 42 42 H 1.09002 * 109.58573 * 6.61856 * 14 13 11 43 43 H 1.08999 * 109.63563 * 294.86762 * 15 14 13 44 44 H 1.08997 * 109.45924 * 174.73968 * 15 14 13 45 45 H 0.97002 * 120.00238 * 264.93677 * 18 16 15 46 46 H 0.97005 * 119.99537 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47523 * 300.16159 * 29 27 16 48 48 H 1.09002 * 109.46746 * 60.16348 * 29 27 16 49 49 H 1.09001 * 109.46894 * 180.15815 * 29 27 16 50 50 H 1.08993 * 109.58529 * 353.38427 * 30 13 11 51 51 H 1.09006 * 109.57992 * 113.79995 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4733 0.0044 6 6 5.4634 0.6003 -0.0008 7 6 6.3265 -0.6351 -0.0014 8 6 6.0625 1.8474 -0.0008 9 6 5.2714 2.9822 -0.0006 10 6 3.8805 2.8229 -0.0010 11 6 2.9900 3.9990 -0.0003 12 8 2.0607 4.0574 0.7816 13 7 3.2066 5.0088 -0.8662 14 6 4.2521 4.9031 -1.8931 15 6 3.6204 5.1866 -3.2644 16 6 2.9148 6.5440 -3.2238 17 1 2.4882 6.7610 -4.2031 18 7 3.8819 7.5865 -2.8713 19 6 4.6533 8.1624 -3.8451 20 1 4.5485 7.8484 -4.8731 21 6 5.5693 9.1505 -3.5112 22 7 5.6967 9.5335 -2.2584 23 14 6.6211 9.9366 -4.8398 24 1 5.7434 10.5864 -5.8461 25 1 7.5119 10.9551 -4.2280 26 1 7.4445 8.8928 -5.5016 27 6 1.7984 6.5094 -2.1775 28 1 1.0916 5.7176 -2.4258 29 6 1.0724 7.8562 -2.1607 30 6 2.4056 6.2387 -0.7975 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 6.5350 -0.9332 1.0261 37 1 5.8047 -1.4425 -0.5152 38 1 7.2639 -0.4232 -0.5156 39 1 7.1390 1.9343 -0.0004 40 1 5.7156 3.9666 -0.0010 41 1 5.0372 5.6320 -1.6915 42 1 4.6730 3.8977 -1.8839 43 1 2.8965 4.4073 -3.5024 44 1 4.3996 5.2043 -4.0264 45 1 3.9759 7.8687 -1.9480 46 1 6.3371 10.2238 -2.0250 47 1 1.7802 8.6475 -1.9139 48 1 0.6405 8.0483 -3.1429 49 1 0.2793 7.8320 -1.4134 50 1 1.6080 6.1147 -0.0651 51 1 3.0433 7.0742 -0.5084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036236103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:04 Heat of formation + Delta-G solvation = -46.677203 kcal Electronic energy + Delta-G solvation = -31996.853798 eV Core-core repulsion = 27895.982943 eV Total energy + Delta-G solvation = -4100.870855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19148 -40.91249 -39.25985 -39.00169 -35.92602 -34.83592 -33.84376 -33.26448 -32.95258 -31.90264 -30.91802 -29.21425 -27.54268 -26.47112 -25.33559 -24.94698 -23.91499 -23.27048 -22.99186 -21.34036 -19.90849 -19.33593 -19.22016 -18.32917 -17.87663 -17.46374 -17.02374 -16.57865 -16.09327 -15.97511 -15.68953 -15.52798 -15.30025 -15.14660 -14.99626 -14.86995 -14.47533 -14.31136 -14.04852 -13.98273 -13.63350 -13.48709 -13.31937 -13.13969 -13.00468 -12.97757 -12.82308 -12.78092 -12.65167 -12.49061 -12.43190 -12.15071 -11.99250 -11.94021 -11.68569 -11.57645 -11.28840 -11.16925 -10.94675 -10.80056 -10.59187 -9.68065 -9.46076 -8.91112 -7.86385 -5.12794 -0.30634 0.17248 1.51816 1.52851 1.58203 1.58654 1.91376 1.96065 2.61012 2.61674 3.04803 3.45195 3.47590 3.69914 3.84152 3.85276 3.88532 4.00625 4.03370 4.08544 4.09952 4.17994 4.27452 4.31831 4.37125 4.39639 4.52400 4.60649 4.68199 4.70419 4.78525 4.82254 4.83020 4.89201 4.92006 4.93160 4.98502 5.01875 5.12332 5.15203 5.17094 5.20369 5.25931 5.29381 5.46362 5.47429 5.60318 5.62868 6.16969 6.34896 6.36302 6.70549 7.05921 7.42922 8.17670 8.42948 9.36518 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003210 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.080788 B = 8720.834794 C =10131.783047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 O -0.313 6.313 4 C 0.356 3.644 5 N -0.551 5.551 6 C 0.183 3.817 7 C -0.103 4.103 8 C -0.205 4.205 9 C -0.007 4.007 10 C -0.231 4.231 11 C 0.569 3.431 12 O -0.572 6.572 13 N -0.594 5.594 14 C 0.121 3.879 15 C -0.142 4.142 16 C 0.175 3.825 17 H 0.048 0.952 18 N -0.723 5.723 19 C -0.228 4.228 20 H 0.074 0.926 21 C -0.070 4.070 22 N -0.967 5.967 23 Si 0.963 3.037 24 H -0.284 1.284 25 H -0.302 1.302 26 H -0.279 1.279 27 C -0.099 4.099 28 H 0.079 0.921 29 C -0.130 4.130 30 C 0.126 3.874 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.153 0.847 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.374 0.626 46 H 0.248 0.752 47 H 0.043 0.957 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -22.286 3.329 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.219 6.219 4 C 0.176 3.824 5 N -0.277 5.277 6 C 0.045 3.955 7 C -0.160 4.160 8 C -0.225 4.225 9 C -0.033 4.033 10 C -0.237 4.237 11 C 0.358 3.642 12 O -0.452 6.452 13 N -0.325 5.325 14 C -0.001 4.001 15 C -0.183 4.183 16 C 0.067 3.933 17 H 0.066 0.934 18 N -0.364 5.364 19 C -0.360 4.360 20 H 0.092 0.908 21 C -0.262 4.262 22 N -0.619 5.619 23 Si 0.793 3.207 24 H -0.211 1.211 25 H -0.229 1.229 26 H -0.205 1.205 27 C -0.119 4.119 28 H 0.098 0.902 29 C -0.188 4.188 30 C 0.003 3.997 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.197 0.803 40 H 0.171 0.829 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.208 0.792 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.076 -22.837 3.559 23.316 hybrid contribution 0.937 1.808 -0.251 2.052 sum -2.139 -21.029 3.308 21.394 Atomic orbital electron populations 1.21834 0.91520 1.04301 1.02845 1.22863 0.96120 0.79712 1.02638 1.86344 1.16631 1.32491 1.86460 1.19737 0.84527 0.88620 0.89486 1.67324 1.07023 1.31601 1.21743 1.21905 0.88312 0.97131 0.88133 1.20936 0.98187 0.92189 1.04706 1.22134 1.03164 0.91021 1.06176 1.21864 0.89978 1.01530 0.89893 1.19803 0.95289 0.91596 1.17027 1.18183 0.83638 0.82314 0.80089 1.90719 1.32622 1.80241 1.41659 1.48033 1.36368 1.16003 1.32123 1.21859 0.89397 1.01916 0.86911 1.22473 1.00680 0.98775 0.96333 1.20385 0.88953 0.87935 0.96069 0.93416 1.42553 1.43567 1.42982 1.07283 1.19516 1.12587 1.13623 0.90288 0.90796 1.25360 1.02100 1.01044 0.97744 1.69794 1.40103 1.34449 1.17507 0.85367 0.78654 0.77907 0.78723 1.21065 1.22868 1.20476 1.21620 0.97078 0.98733 0.94434 0.90248 1.21592 0.99495 0.95753 1.01959 1.21528 0.94927 0.85111 0.98127 0.92186 0.87389 0.92454 0.91047 0.91382 0.88452 0.90173 0.87538 0.80287 0.82893 0.91733 0.89091 0.91667 0.91155 0.79184 0.94342 0.93817 0.92136 0.91781 0.90041 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.06 1.36 6.03 71.98 0.43 1.79 16 3 O -0.31 -9.77 9.15 -77.70 -0.71 -10.48 16 4 C 0.36 10.69 7.48 85.13 0.64 11.33 16 5 N -0.55 -13.69 9.11 -296.07 -2.70 -16.39 16 6 C 0.18 3.44 6.78 42.58 0.29 3.73 16 7 C -0.10 -1.03 10.16 71.24 0.72 -0.30 16 8 C -0.21 -3.68 9.71 22.32 0.22 -3.46 16 9 C -0.01 -0.17 7.66 22.72 0.17 0.00 16 10 C -0.23 -7.10 4.87 -19.91 -0.10 -7.20 16 11 C 0.57 20.68 6.98 86.69 0.61 21.29 16 12 O -0.57 -24.46 15.92 5.48 0.09 -24.37 16 13 N -0.59 -20.50 2.97 -821.84 -2.44 -22.93 16 14 C 0.12 3.91 5.04 86.51 0.44 4.35 16 15 C -0.14 -4.68 5.80 30.82 0.18 -4.50 16 16 C 0.18 6.52 2.53 45.02 0.11 6.64 16 17 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 18 N -0.72 -33.26 3.63 -322.79 -1.17 -34.43 16 19 C -0.23 -11.76 9.93 84.04 0.83 -10.93 16 20 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 22 N -0.97 -56.64 13.06 21.65 0.28 -56.35 16 23 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C -0.10 -3.31 2.67 -10.72 -0.03 -3.34 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 C -0.13 -4.23 9.06 71.98 0.65 -3.58 16 30 C 0.13 4.48 5.43 86.36 0.47 4.95 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 35 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 0.56 8.07 -2.39 -0.02 0.54 16 39 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.15 3.50 7.34 -2.91 -0.02 3.48 16 41 H 0.06 2.39 7.74 -2.38 -0.02 2.37 16 42 H 0.09 2.55 5.09 -2.39 -0.01 2.54 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.37 18.78 5.92 -92.71 -0.55 18.23 16 46 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 47 H 0.04 1.66 7.53 -2.39 -0.02 1.65 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 2.96 6.99 -2.39 -0.02 2.95 16 51 H 0.06 2.28 6.64 -2.38 -0.02 2.27 16 Total: -1.00 -69.83 405.84 2.60 -67.23 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.38 Total: 35.66 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.84 Total: 15.53 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -6.03 Total: -130.10 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.62 Total: -34.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.83 2.60 -67.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036236103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.550 kcal (2) G-P(sol) polarization free energy of solvation -69.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds