Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47261 * 2 1 4 4 C 1.35674 * 117.00342 * 179.97438 * 3 2 1 5 5 C 1.38926 * 119.69039 * 179.97438 * 4 3 2 6 6 C 1.38376 * 119.11211 * 180.02562 * 5 4 3 7 7 C 1.38822 * 118.48794 * 359.97438 * 6 5 4 8 8 C 1.38045 * 119.28993 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.58277 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47241 * 124.97211 * 9 8 7 11 11 O 1.21279 * 119.99726 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99789 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.20643 * 35.00231 * 13 12 10 15 15 C 1.50127 * 109.20591 * 154.36326 * 13 12 10 16 16 C 1.52528 * 105.41840 * 218.02353 * 15 13 12 17 17 C 1.46235 * 114.27672 * 270.60175 * 16 15 13 18 18 N 1.50158 * 107.53711 * 58.40502 * 17 16 15 19 19 C 1.36941 * 120.54325 * 109.56766 * 18 17 16 20 20 H 1.08000 * 120.00507 * 156.70798 * 19 18 17 21 21 C 1.38819 * 119.99215 * 336.70732 * 19 18 17 22 22 N 1.31615 * 120.00393 * 340.39773 * 21 19 18 23 23 Si 1.86806 * 119.99584 * 160.39861 * 21 19 18 24 24 H 1.48501 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47241 * 119.99946 * 23 21 19 26 26 H 1.48500 * 109.46719 * 240.00109 * 23 21 19 27 27 C 1.43437 * 118.92249 * 289.58540 * 18 17 16 28 28 C 1.54843 * 109.20782 * 275.64218 * 13 12 10 29 29 N 1.31961 * 120.83847 * 359.97438 * 8 7 6 30 30 H 1.08997 * 109.46990 * 299.99630 * 1 2 3 31 31 H 1.08996 * 109.46832 * 59.99973 * 1 2 3 32 32 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46992 * 240.00008 * 2 1 3 34 34 H 1.08999 * 109.47436 * 120.00438 * 2 1 3 35 35 H 1.07997 * 120.43643 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.75536 * 179.97438 * 6 5 4 37 37 H 1.08004 * 120.35374 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47495 * 244.97330 * 9 8 7 39 39 H 1.09002 * 109.47010 * 4.97512 * 9 8 7 40 40 H 0.96995 * 120.00073 * 0.02562 * 12 10 9 41 41 H 1.09001 * 110.25063 * 336.99847 * 15 13 12 42 42 H 1.09009 * 110.24938 * 98.91051 * 15 13 12 43 43 H 1.09008 * 108.51678 * 31.83968 * 16 15 13 44 44 H 1.08996 * 108.52069 * 149.35352 * 16 15 13 45 45 H 1.09001 * 109.84417 * 177.91432 * 17 16 15 46 46 H 1.08997 * 109.84306 * 298.88914 * 17 16 15 47 47 H 0.96991 * 119.99941 * 180.02562 * 22 21 19 48 48 H 1.09001 * 108.16122 * 213.28790 * 27 18 17 49 49 H 1.08997 * 108.15990 * 330.06048 * 27 18 17 50 50 H 1.08997 * 109.35933 * 320.99654 * 28 13 12 51 51 H 1.08996 * 109.35920 * 80.58955 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8754 2.8117 0.0000 6 6 5.2490 2.9792 0.0000 7 6 6.0540 1.8481 0.0011 8 6 5.4647 0.5998 0.0016 9 6 6.3322 -0.6324 0.0034 10 6 5.9545 -1.5111 1.1680 11 8 5.0678 -1.1705 1.9220 12 7 6.6014 -2.6759 1.3710 13 6 6.2337 -3.5303 2.5029 14 1 5.1591 -3.4605 2.6706 15 6 6.5926 -4.9530 2.1848 16 6 5.4646 -5.7964 2.7702 17 6 5.6785 -6.2070 4.1574 18 7 5.8453 -4.9604 4.9777 19 6 4.8728 -4.5730 5.8605 20 1 5.1234 -3.9328 6.6935 21 6 3.5647 -5.0031 5.6847 22 7 3.1686 -5.4419 4.5087 23 14 2.3665 -4.9591 7.1172 24 1 3.0543 -4.4281 8.3215 25 1 1.2181 -4.0821 6.7753 26 1 1.8752 -6.3329 7.3938 27 6 7.0397 -4.1817 4.8213 28 6 6.9797 -3.0458 3.7703 29 7 4.1513 0.4717 0.0015 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2194 3.6696 -0.0012 36 1 5.6849 3.9673 -0.0008 37 1 7.1297 1.9439 0.0008 38 1 6.1868 -1.1806 -0.9274 39 1 7.3784 -0.3400 0.0932 40 1 7.3103 -2.9485 0.7677 41 1 6.6492 -5.0955 1.1056 42 1 7.5430 -5.2153 2.6497 43 1 4.5397 -5.2218 2.7179 44 1 5.3476 -6.6907 2.1584 45 1 4.8168 -6.7716 4.5132 46 1 6.5776 -6.8193 4.2275 47 1 2.2545 -5.7421 4.3858 48 1 7.2855 -3.7390 5.7866 49 1 7.8502 -4.8550 4.5427 50 1 7.9932 -2.7480 3.5014 51 1 6.4542 -2.1901 4.1939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052577853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = -11.254361 kcal Electronic energy + Delta-G solvation = -31569.260224 eV Core-core repulsion = 27469.925418 eV Total energy + Delta-G solvation = -4099.334806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.73408 -39.43411 -38.12404 -37.43520 -34.52734 -33.11541 -32.30595 -32.12453 -31.52984 -31.04408 -29.84813 -27.93189 -26.03620 -24.15317 -23.87059 -23.16893 -22.52344 -21.97708 -20.36863 -19.68606 -19.05643 -18.23690 -16.96731 -16.67699 -16.44306 -16.09717 -16.04520 -15.45910 -15.12725 -14.71813 -14.32932 -14.12930 -13.99138 -13.78007 -13.71906 -13.24907 -13.17926 -13.06579 -12.55830 -12.53543 -12.26562 -12.20070 -12.07769 -11.91369 -11.77247 -11.45278 -11.38864 -11.21753 -10.75675 -10.65291 -10.53897 -10.29625 -10.16748 -9.98871 -9.87602 -9.72752 -9.55716 -9.45610 -9.29939 -9.26221 -8.51089 -8.42295 -8.28896 -6.65439 -5.72838 -3.11218 1.08592 1.29640 3.05855 3.09699 3.42878 3.49440 3.51459 3.53399 3.88574 4.07741 4.57690 4.61730 4.94018 5.00777 5.06306 5.08269 5.13347 5.20219 5.30785 5.31796 5.40040 5.44265 5.46749 5.62050 5.63825 5.76533 5.80579 5.87442 5.92886 5.94366 6.06137 6.06616 6.11119 6.31037 6.35692 6.40250 6.45688 6.53196 6.75611 6.92763 6.96137 6.99373 7.08582 7.21763 7.27532 7.30946 7.63280 7.81139 7.93568 7.99254 8.02718 8.49136 8.72474 9.25695 9.93127 10.45267 11.34995 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003319 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.930033 B = 8433.804447 C =10026.598549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.329 3.671 5 C -0.199 4.199 6 C -0.043 4.043 7 C -0.210 4.210 8 C 0.189 3.811 9 C -0.096 4.096 10 C 0.510 3.490 11 O -0.513 6.513 12 N -0.732 5.732 13 C 0.157 3.843 14 H 0.101 0.899 15 C -0.120 4.120 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.588 5.588 19 C -0.248 4.248 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.162 3.838 28 C -0.150 4.150 29 N -0.509 5.509 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.389 0.611 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.006 0.994 47 H 0.251 0.749 48 H 0.032 0.968 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 10.985 -14.485 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.218 6.218 4 C 0.150 3.850 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.230 4.230 8 C 0.051 3.949 9 C -0.136 4.136 10 C 0.294 3.706 11 O -0.387 6.387 12 N -0.383 5.383 13 C 0.055 3.945 14 H 0.119 0.881 15 C -0.158 4.158 16 C -0.168 4.168 17 C 0.042 3.958 18 N -0.309 5.309 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.728 3.272 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.032 3.968 28 C -0.193 4.193 29 N -0.232 5.232 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.222 0.778 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.108 0.892 46 H 0.024 0.976 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.046 0.954 50 H 0.062 0.938 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.296 10.503 -13.922 18.226 hybrid contribution 0.067 0.635 0.271 0.694 sum 5.363 11.138 -13.651 18.417 Atomic orbital electron populations 1.21811 0.93157 1.03020 1.02855 1.22635 0.94513 0.80647 1.03162 1.86183 1.16815 1.31167 1.87586 1.19762 0.84170 0.89683 0.91418 1.21030 0.95907 0.95720 1.09267 1.21293 0.92314 0.99172 0.94025 1.21714 1.01164 0.92556 1.07596 1.20195 0.88741 0.93466 0.92501 1.20691 0.99379 0.93707 0.99860 1.20109 0.82539 0.81940 0.85981 1.90789 1.29553 1.71868 1.46496 1.46484 1.38938 1.21638 1.31273 1.21217 1.01918 0.87758 0.83643 0.88095 1.21355 1.00250 0.95185 0.99037 1.20929 0.99579 0.98736 0.97586 1.20159 0.98177 0.87810 0.89688 1.44276 1.18514 1.21951 1.46198 1.19241 0.87484 1.28518 1.02493 0.91505 1.24868 0.96463 1.01899 0.96173 1.69963 1.16551 1.47815 1.20105 0.86284 0.81208 0.77138 0.82546 1.20427 1.21906 1.21704 1.20345 0.89815 0.91440 0.95181 1.23287 0.97707 1.01185 0.97072 1.67079 1.05782 1.33040 1.17267 0.91680 0.92051 0.90174 0.91863 0.90681 0.84397 0.84260 0.84692 0.87314 0.87456 0.77799 0.92915 0.92000 0.87912 0.95282 0.89168 0.97617 0.93875 0.94923 0.95391 0.93797 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 16 2 C 0.07 0.95 6.03 37.16 0.22 1.17 16 3 O -0.31 -4.74 10.12 -18.72 -0.19 -4.93 16 4 C 0.33 5.05 7.49 -17.11 -0.13 4.92 16 5 C -0.20 -2.42 10.04 -39.28 -0.39 -2.82 16 6 C -0.04 -0.44 10.17 -39.31 -0.40 -0.83 16 7 C -0.21 -2.29 9.70 -39.44 -0.38 -2.67 16 8 C 0.19 2.59 5.76 -82.61 -0.48 2.12 16 9 C -0.10 -1.10 6.10 -29.03 -0.18 -1.28 16 10 C 0.51 8.46 7.72 -10.98 -0.08 8.37 16 11 O -0.51 -11.41 14.99 5.56 0.08 -11.33 16 12 N -0.73 -11.08 4.97 -54.25 -0.27 -11.35 16 13 C 0.16 3.02 2.23 -68.39 -0.15 2.87 16 14 H 0.10 2.54 6.25 -51.93 -0.32 2.21 16 15 C -0.12 -2.10 5.33 -28.40 -0.15 -2.26 16 16 C -0.13 -2.74 5.02 -30.19 -0.15 -2.89 16 17 C 0.17 3.82 5.25 -5.21 -0.03 3.80 16 18 N -0.59 -14.53 2.60 -175.11 -0.46 -14.99 16 19 C -0.25 -6.85 9.63 -15.05 -0.14 -7.00 16 20 H 0.07 1.87 7.89 -52.49 -0.41 1.45 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 22 N -0.90 -25.38 9.43 55.49 0.52 -24.85 16 23 Si 0.90 22.19 29.60 -169.99 -5.03 17.16 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 C 0.16 3.43 5.18 -4.68 -0.02 3.41 16 28 C -0.15 -2.96 5.98 -24.78 -0.15 -3.11 16 29 N -0.51 -8.31 8.08 -9.55 -0.08 -8.39 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 34 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.04 7.94 -52.48 -0.42 0.63 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 0.84 7.86 -51.93 -0.41 0.43 16 40 H 0.39 4.33 8.49 -40.82 -0.35 3.98 16 41 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 42 H 0.06 1.03 6.29 -51.92 -0.33 0.71 16 43 H 0.10 2.60 5.29 -51.92 -0.27 2.33 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 46 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 49 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 50 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 51 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -33.85 402.43 -9.88 -43.74 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.21 Total: 6.39 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.32 Total: 2.48 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.28 Total: -59.58 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.11 Total: -16.25 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.85 -9.88 -43.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052577853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.482 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds