Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47261 * 2 1 4 4 C 1.35674 * 117.00342 * 179.97438 * 3 2 1 5 5 C 1.38926 * 119.69039 * 179.97438 * 4 3 2 6 6 C 1.38376 * 119.11211 * 180.02562 * 5 4 3 7 7 C 1.38822 * 118.48794 * 359.97438 * 6 5 4 8 8 C 1.38045 * 119.28993 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.58277 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47241 * 124.97211 * 9 8 7 11 11 O 1.21279 * 119.99726 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99789 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.20643 * 35.00231 * 13 12 10 15 15 C 1.50127 * 109.20591 * 154.36326 * 13 12 10 16 16 C 1.52528 * 105.41840 * 218.02353 * 15 13 12 17 17 C 1.46235 * 114.27672 * 270.60175 * 16 15 13 18 18 N 1.50158 * 107.53711 * 58.40502 * 17 16 15 19 19 C 1.36941 * 120.54325 * 109.56766 * 18 17 16 20 20 H 1.08000 * 120.00507 * 156.70798 * 19 18 17 21 21 C 1.38819 * 119.99215 * 336.70732 * 19 18 17 22 22 N 1.31615 * 120.00393 * 340.39773 * 21 19 18 23 23 Si 1.86806 * 119.99584 * 160.39861 * 21 19 18 24 24 H 1.48501 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47241 * 119.99946 * 23 21 19 26 26 H 1.48500 * 109.46719 * 240.00109 * 23 21 19 27 27 C 1.43437 * 118.92249 * 289.58540 * 18 17 16 28 28 C 1.54843 * 109.20782 * 275.64218 * 13 12 10 29 29 N 1.31961 * 120.83847 * 359.97438 * 8 7 6 30 30 H 1.08997 * 109.46990 * 299.99630 * 1 2 3 31 31 H 1.08996 * 109.46832 * 59.99973 * 1 2 3 32 32 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46992 * 240.00008 * 2 1 3 34 34 H 1.08999 * 109.47436 * 120.00438 * 2 1 3 35 35 H 1.07997 * 120.43643 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.75536 * 179.97438 * 6 5 4 37 37 H 1.08004 * 120.35374 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47495 * 244.97330 * 9 8 7 39 39 H 1.09002 * 109.47010 * 4.97512 * 9 8 7 40 40 H 0.96995 * 120.00073 * 0.02562 * 12 10 9 41 41 H 1.09001 * 110.25063 * 336.99847 * 15 13 12 42 42 H 1.09009 * 110.24938 * 98.91051 * 15 13 12 43 43 H 1.09008 * 108.51678 * 31.83968 * 16 15 13 44 44 H 1.08996 * 108.52069 * 149.35352 * 16 15 13 45 45 H 1.09001 * 109.84417 * 177.91432 * 17 16 15 46 46 H 1.08997 * 109.84306 * 298.88914 * 17 16 15 47 47 H 0.96991 * 119.99941 * 180.02562 * 22 21 19 48 48 H 1.09001 * 108.16122 * 213.28790 * 27 18 17 49 49 H 1.08997 * 108.15990 * 330.06048 * 27 18 17 50 50 H 1.08997 * 109.35933 * 320.99654 * 28 13 12 51 51 H 1.08996 * 109.35920 * 80.58955 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8754 2.8117 0.0000 6 6 5.2490 2.9792 0.0000 7 6 6.0540 1.8481 0.0011 8 6 5.4647 0.5998 0.0016 9 6 6.3322 -0.6324 0.0034 10 6 5.9545 -1.5111 1.1680 11 8 5.0678 -1.1705 1.9220 12 7 6.6014 -2.6759 1.3710 13 6 6.2337 -3.5303 2.5029 14 1 5.1591 -3.4605 2.6706 15 6 6.5926 -4.9530 2.1848 16 6 5.4646 -5.7964 2.7702 17 6 5.6785 -6.2070 4.1574 18 7 5.8453 -4.9604 4.9777 19 6 4.8728 -4.5730 5.8605 20 1 5.1234 -3.9328 6.6935 21 6 3.5647 -5.0031 5.6847 22 7 3.1686 -5.4419 4.5087 23 14 2.3665 -4.9591 7.1172 24 1 3.0543 -4.4281 8.3215 25 1 1.2181 -4.0821 6.7753 26 1 1.8752 -6.3329 7.3938 27 6 7.0397 -4.1817 4.8213 28 6 6.9797 -3.0458 3.7703 29 7 4.1513 0.4717 0.0015 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2194 3.6696 -0.0012 36 1 5.6849 3.9673 -0.0008 37 1 7.1297 1.9439 0.0008 38 1 6.1868 -1.1806 -0.9274 39 1 7.3784 -0.3400 0.0932 40 1 7.3103 -2.9485 0.7677 41 1 6.6492 -5.0955 1.1056 42 1 7.5430 -5.2153 2.6497 43 1 4.5397 -5.2218 2.7179 44 1 5.3476 -6.6907 2.1584 45 1 4.8168 -6.7716 4.5132 46 1 6.5776 -6.8193 4.2275 47 1 2.2545 -5.7421 4.3858 48 1 7.2855 -3.7390 5.7866 49 1 7.8502 -4.8550 4.5427 50 1 7.9932 -2.7480 3.5014 51 1 6.4542 -2.1901 4.1939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052577853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -35.178740 kcal Electronic energy + Delta-G solvation = -31570.297663 eV Core-core repulsion = 27469.925418 eV Total energy + Delta-G solvation = -4100.372245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74373 -40.80707 -39.42297 -38.83349 -36.19342 -34.19627 -33.88752 -33.31375 -33.17302 -32.24855 -31.41098 -29.02231 -27.81968 -25.73078 -25.14789 -24.63760 -23.67796 -23.06438 -21.96078 -21.11435 -20.73394 -19.30732 -18.59909 -18.12748 -17.56499 -17.25630 -16.96528 -16.90993 -16.85829 -16.20490 -15.84154 -15.61429 -15.17140 -15.10853 -15.06534 -14.88199 -14.47681 -14.07265 -13.97261 -13.85350 -13.49160 -13.45987 -13.42005 -13.24818 -13.13572 -12.94586 -12.80039 -12.73273 -12.51252 -12.33616 -12.07980 -11.93820 -11.76670 -11.72891 -11.55182 -11.20385 -11.11401 -10.84698 -10.71839 -10.46337 -10.45178 -9.85694 -9.40426 -8.64503 -7.84705 -5.24234 0.14752 0.40466 1.40765 1.43777 1.52724 1.82588 2.06097 2.32118 2.51809 2.87481 3.13509 3.28394 3.62973 3.79447 3.96243 3.97924 4.03006 4.06473 4.13569 4.16791 4.21831 4.34505 4.36289 4.38993 4.50542 4.51567 4.54907 4.64928 4.76520 4.78246 4.80644 4.85454 4.89873 4.90531 5.01312 5.09491 5.12083 5.19033 5.24091 5.29784 5.35065 5.46554 5.52117 5.57362 5.65715 5.74142 5.82839 6.20794 6.24985 6.41572 6.77584 6.98509 7.18380 7.52151 7.92537 8.39649 9.19465 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003319 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.930033 B = 8433.804447 C =10026.598549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 O -0.321 6.321 4 C 0.287 3.713 5 C -0.203 4.203 6 C -0.038 4.038 7 C -0.198 4.198 8 C 0.154 3.846 9 C -0.082 4.082 10 C 0.503 3.497 11 O -0.581 6.581 12 N -0.715 5.715 13 C 0.171 3.829 14 H 0.031 0.969 15 C -0.105 4.105 16 C -0.123 4.123 17 C 0.167 3.833 18 N -0.603 5.603 19 C -0.261 4.261 20 H 0.056 0.944 21 C -0.043 4.043 22 N -0.915 5.915 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.302 1.302 26 H -0.284 1.284 27 C 0.155 3.845 28 C -0.138 4.138 29 N -0.547 5.547 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.415 0.585 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.245 0.755 48 H 0.024 0.976 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 12.002 -16.345 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 O -0.229 6.229 4 C 0.108 3.892 5 C -0.223 4.223 6 C -0.063 4.063 7 C -0.218 4.218 8 C 0.017 3.983 9 C -0.122 4.122 10 C 0.290 3.710 11 O -0.459 6.459 12 N -0.368 5.368 13 C 0.066 3.934 14 H 0.050 0.950 15 C -0.142 4.142 16 C -0.163 4.163 17 C 0.044 3.956 18 N -0.325 5.325 19 C -0.391 4.391 20 H 0.074 0.926 21 C -0.239 4.239 22 N -0.561 5.561 23 Si 0.781 3.219 24 H -0.197 1.197 25 H -0.230 1.230 26 H -0.211 1.211 27 C 0.027 3.973 28 C -0.180 4.180 29 N -0.271 5.271 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.173 0.827 36 H 0.201 0.799 37 H 0.194 0.806 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.253 0.747 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.080 0.920 50 H 0.103 0.897 51 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 8.927 11.506 -15.818 21.501 hybrid contribution -0.958 0.369 0.854 1.336 sum 7.968 11.875 -14.964 20.699 Atomic orbital electron populations 1.21798 0.90691 1.03908 1.03651 1.22520 0.96387 0.80601 1.00855 1.86154 1.17686 1.30926 1.88176 1.20261 0.84061 0.91020 0.93817 1.21411 0.97511 0.94886 1.08487 1.21859 0.91247 1.01107 0.92044 1.22207 1.03286 0.91398 1.04900 1.20771 0.88235 0.95632 0.93666 1.20781 1.01399 0.92139 0.97885 1.21102 0.81229 0.82201 0.86507 1.90781 1.32469 1.73393 1.49262 1.46206 1.39354 1.20811 1.30472 1.20679 0.97827 0.89823 0.85058 0.95047 1.21256 0.99389 0.92548 1.01041 1.20743 0.99161 0.99230 0.97133 1.20119 0.97881 0.87297 0.90307 1.44442 1.18738 1.23065 1.46222 1.19404 0.88534 1.28232 1.02972 0.92597 1.25498 0.97861 1.02469 0.98055 1.70146 1.16234 1.48533 1.21160 0.85442 0.79032 0.76973 0.80423 1.19666 1.22973 1.21066 1.20501 0.89181 0.92202 0.95444 1.23141 0.99263 0.98912 0.96684 1.66998 1.07530 1.34273 1.18305 0.91919 0.90082 0.89240 0.92097 0.95042 0.82654 0.79935 0.80586 0.85042 0.82569 0.74696 0.89610 0.89680 0.92654 0.93716 0.92756 0.94722 0.94587 0.95717 0.92034 0.89748 0.97058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 10.28 71.98 0.74 -2.71 16 2 C 0.07 2.30 6.03 71.98 0.43 2.73 16 3 O -0.32 -10.54 10.12 -89.91 -0.91 -11.45 16 4 C 0.29 9.20 7.49 84.79 0.63 9.84 16 5 C -0.20 -4.79 10.04 22.47 0.23 -4.56 16 6 C -0.04 -0.65 10.17 22.44 0.23 -0.42 16 7 C -0.20 -3.66 9.70 22.36 0.22 -3.44 16 8 C 0.15 4.04 5.76 42.49 0.24 4.29 16 9 C -0.08 -1.67 6.10 29.10 0.18 -1.50 16 10 C 0.50 16.48 7.72 87.66 0.68 17.16 16 11 O -0.58 -27.38 14.99 -3.03 -0.05 -27.43 16 12 N -0.72 -20.40 4.97 -443.94 -2.20 -22.60 16 13 C 0.17 6.52 2.23 44.69 0.10 6.62 16 14 H 0.03 1.68 6.25 -2.39 -0.01 1.66 16 15 C -0.10 -3.41 5.33 29.51 0.16 -3.25 16 16 C -0.12 -5.24 5.02 28.36 0.14 -5.10 16 17 C 0.17 7.77 5.25 83.58 0.44 8.20 16 18 N -0.60 -30.31 2.60 -707.93 -1.84 -32.15 16 19 C -0.26 -15.01 9.63 84.03 0.81 -14.20 16 20 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 21 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 22 N -0.91 -54.50 9.43 21.65 0.20 -54.29 16 23 Si 0.95 47.49 29.60 68.60 2.03 49.52 16 24 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 26 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 27 C 0.16 6.45 5.18 87.58 0.45 6.91 16 28 C -0.14 -5.36 5.98 31.86 0.19 -5.17 16 29 N -0.55 -18.61 8.08 -296.98 -2.40 -21.01 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.06 1.89 8.11 -2.38 -0.02 1.87 16 34 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.18 1.70 7.94 -2.91 -0.02 1.68 16 38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.16 1.60 7.86 -2.39 -0.02 1.58 16 40 H 0.42 7.50 8.49 -92.71 -0.79 6.72 16 41 H 0.09 2.25 7.86 -2.39 -0.02 2.23 16 42 H 0.08 2.44 6.29 -2.38 -0.01 2.43 16 43 H 0.05 2.94 5.29 -2.38 -0.01 2.93 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 2.91 6.05 -2.39 -0.01 2.89 16 46 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16 49 H 0.06 2.15 6.88 -2.39 -0.02 2.13 16 50 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 51 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -84.82 402.43 1.27 -83.56 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.15 Total: 22.52 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.29 Total: 13.33 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -6.24 Total: -130.06 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.95 Total: -38.88 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -84.82 1.27 -83.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052577853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.379 kcal (2) G-P(sol) polarization free energy of solvation -84.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds