Wall clock time and date at job start Wed Apr 1 2020 04:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42894 * 109.47261 * 2 1
4 4 C 1.35674 * 117.00342 * 179.97438 * 3 2 1
5 5 C 1.38926 * 119.69039 * 179.97438 * 4 3 2
6 6 C 1.38376 * 119.11211 * 180.02562 * 5 4 3
7 7 C 1.38822 * 118.48794 * 359.97438 * 6 5 4
8 8 C 1.38045 * 119.28993 * 0.02562 * 7 6 5
9 9 C 1.50699 * 119.58277 * 180.02562 * 8 7 6
10 10 C 1.50702 * 109.47241 * 124.97211 * 9 8 7
11 11 O 1.21279 * 119.99726 * 0.02562 * 10 9 8
12 12 N 1.34776 * 120.00063 * 179.97438 * 10 9 8
13 13 C 1.46505 * 119.99789 * 180.02562 * 12 10 9
14 14 H 1.08993 * 109.20643 * 35.00231 * 13 12 10
15 15 C 1.50127 * 109.20591 * 154.36326 * 13 12 10
16 16 C 1.52528 * 105.41840 * 218.02353 * 15 13 12
17 17 C 1.46235 * 114.27672 * 270.60175 * 16 15 13
18 18 N 1.50158 * 107.53711 * 58.40502 * 17 16 15
19 19 C 1.36941 * 120.54325 * 109.56766 * 18 17 16
20 20 H 1.08000 * 120.00507 * 156.70798 * 19 18 17
21 21 C 1.38819 * 119.99215 * 336.70732 * 19 18 17
22 22 N 1.31615 * 120.00393 * 340.39773 * 21 19 18
23 23 Si 1.86806 * 119.99584 * 160.39861 * 21 19 18
24 24 H 1.48501 * 109.46915 * 359.97438 * 23 21 19
25 25 H 1.48492 * 109.47241 * 119.99946 * 23 21 19
26 26 H 1.48500 * 109.46719 * 240.00109 * 23 21 19
27 27 C 1.43437 * 118.92249 * 289.58540 * 18 17 16
28 28 C 1.54843 * 109.20782 * 275.64218 * 13 12 10
29 29 N 1.31961 * 120.83847 * 359.97438 * 8 7 6
30 30 H 1.08997 * 109.46990 * 299.99630 * 1 2 3
31 31 H 1.08996 * 109.46832 * 59.99973 * 1 2 3
32 32 H 1.09005 * 109.46973 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.46992 * 240.00008 * 2 1 3
34 34 H 1.08999 * 109.47436 * 120.00438 * 2 1 3
35 35 H 1.07997 * 120.43643 * 359.97438 * 5 4 3
36 36 H 1.08000 * 120.75536 * 179.97438 * 6 5 4
37 37 H 1.08004 * 120.35374 * 179.97438 * 7 6 5
38 38 H 1.08994 * 109.47495 * 244.97330 * 9 8 7
39 39 H 1.09002 * 109.47010 * 4.97512 * 9 8 7
40 40 H 0.96995 * 120.00073 * 0.02562 * 12 10 9
41 41 H 1.09001 * 110.25063 * 336.99847 * 15 13 12
42 42 H 1.09009 * 110.24938 * 98.91051 * 15 13 12
43 43 H 1.09008 * 108.51678 * 31.83968 * 16 15 13
44 44 H 1.08996 * 108.52069 * 149.35352 * 16 15 13
45 45 H 1.09001 * 109.84417 * 177.91432 * 17 16 15
46 46 H 1.08997 * 109.84306 * 298.88914 * 17 16 15
47 47 H 0.96991 * 119.99941 * 180.02562 * 22 21 19
48 48 H 1.09001 * 108.16122 * 213.28790 * 27 18 17
49 49 H 1.08997 * 108.15990 * 330.06048 * 27 18 17
50 50 H 1.08997 * 109.35933 * 320.99654 * 28 13 12
51 51 H 1.08996 * 109.35920 * 80.58955 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3514 1.5250 0.0005
5 6 3.8754 2.8117 0.0000
6 6 5.2490 2.9792 0.0000
7 6 6.0540 1.8481 0.0011
8 6 5.4647 0.5998 0.0016
9 6 6.3322 -0.6324 0.0034
10 6 5.9545 -1.5111 1.1680
11 8 5.0678 -1.1705 1.9220
12 7 6.6014 -2.6759 1.3710
13 6 6.2337 -3.5303 2.5029
14 1 5.1591 -3.4605 2.6706
15 6 6.5926 -4.9530 2.1848
16 6 5.4646 -5.7964 2.7702
17 6 5.6785 -6.2070 4.1574
18 7 5.8453 -4.9604 4.9777
19 6 4.8728 -4.5730 5.8605
20 1 5.1234 -3.9328 6.6935
21 6 3.5647 -5.0031 5.6847
22 7 3.1686 -5.4419 4.5087
23 14 2.3665 -4.9591 7.1172
24 1 3.0543 -4.4281 8.3215
25 1 1.2181 -4.0821 6.7753
26 1 1.8752 -6.3329 7.3938
27 6 7.0397 -4.1817 4.8213
28 6 6.9797 -3.0458 3.7703
29 7 4.1513 0.4717 0.0015
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 1.8934 -0.5139 0.8899
35 1 3.2194 3.6696 -0.0012
36 1 5.6849 3.9673 -0.0008
37 1 7.1297 1.9439 0.0008
38 1 6.1868 -1.1806 -0.9274
39 1 7.3784 -0.3400 0.0932
40 1 7.3103 -2.9485 0.7677
41 1 6.6492 -5.0955 1.1056
42 1 7.5430 -5.2153 2.6497
43 1 4.5397 -5.2218 2.7179
44 1 5.3476 -6.6907 2.1584
45 1 4.8168 -6.7716 4.5132
46 1 6.5776 -6.8193 4.2275
47 1 2.2545 -5.7421 4.3858
48 1 7.2855 -3.7390 5.7866
49 1 7.8502 -4.8550 4.5427
50 1 7.9932 -2.7480 3.5014
51 1 6.4542 -2.1901 4.1939
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001052577853.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:57
Heat of formation + Delta-G solvation = -35.178740 kcal
Electronic energy + Delta-G solvation = -31570.297663 eV
Core-core repulsion = 27469.925418 eV
Total energy + Delta-G solvation = -4100.372245 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.74373 -40.80707 -39.42297 -38.83349 -36.19342 -34.19627 -33.88752 -33.31375
-33.17302 -32.24855 -31.41098 -29.02231 -27.81968 -25.73078 -25.14789 -24.63760
-23.67796 -23.06438 -21.96078 -21.11435 -20.73394 -19.30732 -18.59909 -18.12748
-17.56499 -17.25630 -16.96528 -16.90993 -16.85829 -16.20490 -15.84154 -15.61429
-15.17140 -15.10853 -15.06534 -14.88199 -14.47681 -14.07265 -13.97261 -13.85350
-13.49160 -13.45987 -13.42005 -13.24818 -13.13572 -12.94586 -12.80039 -12.73273
-12.51252 -12.33616 -12.07980 -11.93820 -11.76670 -11.72891 -11.55182 -11.20385
-11.11401 -10.84698 -10.71839 -10.46337 -10.45178 -9.85694 -9.40426 -8.64503
-7.84705 -5.24234 0.14752 0.40466 1.40765 1.43777 1.52724 1.82588
2.06097 2.32118 2.51809 2.87481 3.13509 3.28394 3.62973 3.79447
3.96243 3.97924 4.03006 4.06473 4.13569 4.16791 4.21831 4.34505
4.36289 4.38993 4.50542 4.51567 4.54907 4.64928 4.76520 4.78246
4.80644 4.85454 4.89873 4.90531 5.01312 5.09491 5.12083 5.19033
5.24091 5.29784 5.35065 5.46554 5.52117 5.57362 5.65715 5.74142
5.82839 6.20794 6.24985 6.41572 6.77584 6.98509 7.18380 7.52151
7.92537 8.39649 9.19465
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009991 B = 0.003319 C = 0.002792
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2801.930033 B = 8433.804447 C =10026.598549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.072 3.928
3 O -0.321 6.321
4 C 0.287 3.713
5 C -0.203 4.203
6 C -0.038 4.038
7 C -0.198 4.198
8 C 0.154 3.846
9 C -0.082 4.082
10 C 0.503 3.497
11 O -0.581 6.581
12 N -0.715 5.715
13 C 0.171 3.829
14 H 0.031 0.969
15 C -0.105 4.105
16 C -0.123 4.123
17 C 0.167 3.833
18 N -0.603 5.603
19 C -0.261 4.261
20 H 0.056 0.944
21 C -0.043 4.043
22 N -0.915 5.915
23 Si 0.952 3.048
24 H -0.272 1.272
25 H -0.302 1.302
26 H -0.284 1.284
27 C 0.155 3.845
28 C -0.138 4.138
29 N -0.547 5.547
30 H 0.062 0.938
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.061 0.939
34 H 0.031 0.969
35 H 0.156 0.844
36 H 0.183 0.817
37 H 0.177 0.823
38 H 0.132 0.868
39 H 0.157 0.843
40 H 0.415 0.585
41 H 0.085 0.915
42 H 0.085 0.915
43 H 0.055 0.945
44 H 0.044 0.956
45 H 0.054 0.946
46 H 0.035 0.965
47 H 0.245 0.755
48 H 0.024 0.976
49 H 0.061 0.939
50 H 0.084 0.916
51 H 0.010 0.990
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.316 12.002 -16.345 22.751
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.004 4.004
3 O -0.229 6.229
4 C 0.108 3.892
5 C -0.223 4.223
6 C -0.063 4.063
7 C -0.218 4.218
8 C 0.017 3.983
9 C -0.122 4.122
10 C 0.290 3.710
11 O -0.459 6.459
12 N -0.368 5.368
13 C 0.066 3.934
14 H 0.050 0.950
15 C -0.142 4.142
16 C -0.163 4.163
17 C 0.044 3.956
18 N -0.325 5.325
19 C -0.391 4.391
20 H 0.074 0.926
21 C -0.239 4.239
22 N -0.561 5.561
23 Si 0.781 3.219
24 H -0.197 1.197
25 H -0.230 1.230
26 H -0.211 1.211
27 C 0.027 3.973
28 C -0.180 4.180
29 N -0.271 5.271
30 H 0.081 0.919
31 H 0.099 0.901
32 H 0.108 0.892
33 H 0.079 0.921
34 H 0.050 0.950
35 H 0.173 0.827
36 H 0.201 0.799
37 H 0.194 0.806
38 H 0.150 0.850
39 H 0.174 0.826
40 H 0.253 0.747
41 H 0.104 0.896
42 H 0.103 0.897
43 H 0.073 0.927
44 H 0.063 0.937
45 H 0.072 0.928
46 H 0.053 0.947
47 H 0.054 0.946
48 H 0.043 0.957
49 H 0.080 0.920
50 H 0.103 0.897
51 H 0.029 0.971
Dipole moment (debyes) X Y Z Total
from point charges 8.927 11.506 -15.818 21.501
hybrid contribution -0.958 0.369 0.854 1.336
sum 7.968 11.875 -14.964 20.699
Atomic orbital electron populations
1.21798 0.90691 1.03908 1.03651 1.22520 0.96387 0.80601 1.00855
1.86154 1.17686 1.30926 1.88176 1.20261 0.84061 0.91020 0.93817
1.21411 0.97511 0.94886 1.08487 1.21859 0.91247 1.01107 0.92044
1.22207 1.03286 0.91398 1.04900 1.20771 0.88235 0.95632 0.93666
1.20781 1.01399 0.92139 0.97885 1.21102 0.81229 0.82201 0.86507
1.90781 1.32469 1.73393 1.49262 1.46206 1.39354 1.20811 1.30472
1.20679 0.97827 0.89823 0.85058 0.95047 1.21256 0.99389 0.92548
1.01041 1.20743 0.99161 0.99230 0.97133 1.20119 0.97881 0.87297
0.90307 1.44442 1.18738 1.23065 1.46222 1.19404 0.88534 1.28232
1.02972 0.92597 1.25498 0.97861 1.02469 0.98055 1.70146 1.16234
1.48533 1.21160 0.85442 0.79032 0.76973 0.80423 1.19666 1.22973
1.21066 1.20501 0.89181 0.92202 0.95444 1.23141 0.99263 0.98912
0.96684 1.66998 1.07530 1.34273 1.18305 0.91919 0.90082 0.89240
0.92097 0.95042 0.82654 0.79935 0.80586 0.85042 0.82569 0.74696
0.89610 0.89680 0.92654 0.93716 0.92756 0.94722 0.94587 0.95717
0.92034 0.89748 0.97058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.45 10.28 71.98 0.74 -2.71 16
2 C 0.07 2.30 6.03 71.98 0.43 2.73 16
3 O -0.32 -10.54 10.12 -89.91 -0.91 -11.45 16
4 C 0.29 9.20 7.49 84.79 0.63 9.84 16
5 C -0.20 -4.79 10.04 22.47 0.23 -4.56 16
6 C -0.04 -0.65 10.17 22.44 0.23 -0.42 16
7 C -0.20 -3.66 9.70 22.36 0.22 -3.44 16
8 C 0.15 4.04 5.76 42.49 0.24 4.29 16
9 C -0.08 -1.67 6.10 29.10 0.18 -1.50 16
10 C 0.50 16.48 7.72 87.66 0.68 17.16 16
11 O -0.58 -27.38 14.99 -3.03 -0.05 -27.43 16
12 N -0.72 -20.40 4.97 -443.94 -2.20 -22.60 16
13 C 0.17 6.52 2.23 44.69 0.10 6.62 16
14 H 0.03 1.68 6.25 -2.39 -0.01 1.66 16
15 C -0.10 -3.41 5.33 29.51 0.16 -3.25 16
16 C -0.12 -5.24 5.02 28.36 0.14 -5.10 16
17 C 0.17 7.77 5.25 83.58 0.44 8.20 16
18 N -0.60 -30.31 2.60 -707.93 -1.84 -32.15 16
19 C -0.26 -15.01 9.63 84.03 0.81 -14.20 16
20 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16
21 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16
22 N -0.91 -54.50 9.43 21.65 0.20 -54.29 16
23 Si 0.95 47.49 29.60 68.60 2.03 49.52 16
24 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16
25 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16
26 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16
27 C 0.16 6.45 5.18 87.58 0.45 6.91 16
28 C -0.14 -5.36 5.98 31.86 0.19 -5.17 16
29 N -0.55 -18.61 8.08 -296.98 -2.40 -21.01 16
30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16
33 H 0.06 1.89 8.11 -2.38 -0.02 1.87 16
34 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16
35 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16
36 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16
37 H 0.18 1.70 7.94 -2.91 -0.02 1.68 16
38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16
39 H 0.16 1.60 7.86 -2.39 -0.02 1.58 16
40 H 0.42 7.50 8.49 -92.71 -0.79 6.72 16
41 H 0.09 2.25 7.86 -2.39 -0.02 2.23 16
42 H 0.08 2.44 6.29 -2.38 -0.01 2.43 16
43 H 0.05 2.94 5.29 -2.38 -0.01 2.93 16
44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
45 H 0.05 2.91 6.05 -2.39 -0.01 2.89 16
46 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16
47 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16
48 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16
49 H 0.06 2.15 6.88 -2.39 -0.02 2.13 16
50 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16
51 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
Total: -1.00 -84.82 402.43 1.27 -83.56
By element:
Atomic # 1 Polarization: 22.37 SS G_CDS: 0.15 Total: 22.52 kcal
Atomic # 6 Polarization: 7.05 SS G_CDS: 6.29 Total: 13.33 kcal
Atomic # 7 Polarization: -123.82 SS G_CDS: -6.24 Total: -130.06 kcal
Atomic # 8 Polarization: -37.92 SS G_CDS: -0.95 Total: -38.88 kcal
Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal
Total: -84.82 1.27 -83.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052577853.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.379 kcal
(2) G-P(sol) polarization free energy of solvation -84.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds