Wall clock time and date at job start Wed Apr 1 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46984 * 2 1 4 4 C 1.35422 * 116.99975 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79931 * 0.23141 * 4 3 2 6 6 C 1.31884 * 121.79844 * 180.29006 * 5 4 3 7 7 C 1.50704 * 119.40250 * 179.74825 * 6 5 4 8 8 C 1.38353 * 121.18606 * 359.47483 * 6 5 4 9 9 C 1.38335 * 119.45823 * 0.25253 * 8 6 5 10 10 C 1.39989 * 118.35083 * 0.02562 * 9 8 6 11 11 C 1.47517 * 120.59839 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00301 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00343 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00443 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.20449 * 35.64123 * 14 13 11 16 16 C 1.50122 * 109.20955 * 155.00080 * 14 13 11 17 17 C 1.52531 * 105.41861 * 218.02879 * 16 14 13 18 18 C 1.46236 * 114.27534 * 270.59678 * 17 16 14 19 19 N 1.50171 * 107.53729 * 58.40477 * 18 17 16 20 20 C 1.36932 * 120.53547 * 109.56180 * 19 18 17 21 21 H 1.07996 * 120.00342 * 320.23398 * 20 19 18 22 22 C 1.38820 * 119.99569 * 140.23606 * 20 19 18 23 23 N 1.31615 * 119.99876 * 156.34672 * 22 20 19 24 24 Si 1.86802 * 119.99766 * 336.34457 * 22 20 19 25 25 H 1.48496 * 109.47375 * 95.57475 * 24 22 20 26 26 H 1.48507 * 109.46784 * 215.57353 * 24 22 20 27 27 H 1.48496 * 109.47333 * 335.57259 * 24 22 20 28 28 C 1.43433 * 118.91805 * 289.59072 * 19 18 17 29 29 C 1.54839 * 109.21075 * 276.32302 * 14 13 11 30 30 H 1.09001 * 109.47002 * 300.00040 * 1 2 3 31 31 H 1.08995 * 109.47341 * 60.00056 * 1 2 3 32 32 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47002 * 239.99960 * 2 1 3 34 34 H 1.08995 * 109.47341 * 119.99944 * 2 1 3 35 35 H 1.08994 * 109.47303 * 269.72478 * 7 6 5 36 36 H 1.09004 * 109.46415 * 149.72434 * 7 6 5 37 37 H 1.08991 * 109.47234 * 29.73155 * 7 6 5 38 38 H 1.07998 * 120.26822 * 180.28294 * 8 6 5 39 39 H 1.08004 * 120.82502 * 179.97438 * 9 8 6 40 40 H 0.97005 * 119.99919 * 0.02562 * 13 11 10 41 41 H 1.09012 * 110.25067 * 337.00051 * 16 14 13 42 42 H 1.09001 * 110.25219 * 99.05426 * 16 14 13 43 43 H 1.09001 * 108.51937 * 31.83426 * 17 16 14 44 44 H 1.08998 * 108.51838 * 149.35509 * 17 16 14 45 45 H 1.09004 * 109.84326 * 177.91334 * 18 17 16 46 46 H 1.09002 * 109.84251 * 298.82919 * 18 17 16 47 47 H 0.97002 * 119.99641 * 180.02562 * 23 22 20 48 48 H 1.09009 * 108.15235 * 213.27925 * 28 19 18 49 49 H 1.08995 * 108.16692 * 330.05428 * 28 19 18 50 50 H 1.08999 * 109.35884 * 320.99975 * 29 14 13 51 51 H 1.09007 * 109.35762 * 80.58264 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1508 0.4732 -0.0057 6 6 5.4635 0.6003 -0.0007 7 6 6.3264 -0.6352 -0.0012 8 6 6.0625 1.8474 -0.0007 9 6 5.2714 2.9822 -0.0007 10 6 3.8806 2.8229 -0.0001 11 6 2.9901 3.9990 0.0005 12 8 1.7835 3.8481 0.0005 13 7 3.5137 5.2408 0.0010 14 6 2.6294 6.4088 0.0011 15 1 1.7459 6.1895 0.6005 16 6 3.3554 7.5780 0.6008 17 6 2.3104 8.3261 1.4224 18 6 1.5798 9.3502 0.6769 19 7 0.9091 8.6730 -0.4836 20 6 -0.4515 8.5209 -0.5089 21 1 -0.9829 8.2626 0.3951 22 6 -1.1478 8.6988 -1.6966 23 7 -2.3220 8.1280 -1.8628 24 14 -0.4181 9.7483 -3.0588 25 1 0.2889 8.8764 -4.0308 26 1 -1.5055 10.4838 -3.7532 27 1 0.5420 10.7193 -2.4752 28 6 1.7171 8.1877 -1.5648 29 6 2.1939 6.7182 -1.4523 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 6.5349 -0.9332 1.0263 36 1 7.2639 -0.4233 -0.5155 37 1 5.8047 -1.4425 -0.5150 38 1 7.1390 1.9343 -0.0012 39 1 5.7156 3.9666 -0.0003 40 1 4.4763 5.3613 0.0006 41 1 4.1635 7.2305 1.2446 42 1 3.7484 8.2220 -0.1860 43 1 1.5933 7.6032 1.8114 44 1 2.8095 8.8021 2.2664 45 1 0.8301 9.8116 1.3197 46 1 2.2731 10.1088 0.3137 47 1 -2.8084 8.2520 -2.6929 48 1 1.1462 8.2898 -2.4878 49 1 2.5993 8.8231 -1.6417 50 1 3.0377 6.5596 -2.1238 51 1 1.3794 6.0513 -1.7351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052828980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:12 Heat of formation + Delta-G solvation = -8.884401 kcal Electronic energy + Delta-G solvation = -31523.058534 eV Core-core repulsion = 27423.826497 eV Total energy + Delta-G solvation = -4099.232037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.08034 -39.40214 -38.28252 -37.75423 -34.68856 -33.54038 -32.78194 -32.39147 -31.21660 -31.04709 -30.50205 -28.11803 -26.27197 -24.51368 -23.90034 -23.46836 -22.81832 -22.40273 -20.62059 -20.17153 -19.40428 -18.48632 -17.48431 -16.95356 -16.46546 -16.38924 -15.80053 -15.18117 -14.94086 -14.75919 -14.59461 -14.32266 -14.27561 -14.14035 -13.83801 -13.34348 -13.17976 -13.11656 -12.91640 -12.75242 -12.60599 -12.53729 -12.43373 -12.08086 -11.87280 -11.82300 -11.75439 -11.53382 -10.87168 -10.79442 -10.79246 -10.47788 -10.37731 -10.21261 -10.12457 -10.08519 -9.97906 -9.61546 -9.50773 -9.40399 -8.71003 -8.52793 -8.34694 -6.68143 -5.91931 -3.34824 0.51234 1.02780 2.88967 2.97432 3.34961 3.38280 3.51291 3.57372 3.75022 3.88696 4.34588 4.60038 4.62509 4.74226 4.86021 4.94374 4.96743 5.04244 5.13450 5.15233 5.19256 5.22012 5.29963 5.36962 5.46170 5.52769 5.57263 5.61113 5.64617 5.76112 5.83424 5.88414 5.95382 6.03841 6.07869 6.17258 6.19892 6.27856 6.35860 6.43487 6.63916 6.69831 6.77894 6.85340 6.97946 6.99547 7.07911 7.17487 7.56069 7.81166 8.16922 8.45738 8.56114 9.09148 9.79426 10.23448 11.23464 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.002960 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.928478 B = 9458.551985 C =10635.925130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.265 6.265 4 C 0.379 3.621 5 N -0.548 5.548 6 C 0.188 3.812 7 C -0.107 4.107 8 C -0.223 4.223 9 C -0.008 4.008 10 C -0.211 4.211 11 C 0.555 3.445 12 O -0.503 6.503 13 N -0.728 5.728 14 C 0.157 3.843 15 H 0.096 0.904 16 C -0.119 4.119 17 C -0.131 4.131 18 C 0.135 3.865 19 N -0.600 5.600 20 C -0.267 4.267 21 H 0.075 0.925 22 C 0.040 3.960 23 N -0.895 5.895 24 Si 0.876 3.124 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.270 1.270 28 C 0.153 3.847 29 C -0.148 4.148 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.388 0.612 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.043 0.957 49 H 0.028 0.972 50 H 0.049 0.951 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.847 -14.839 5.015 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.169 6.169 4 C 0.199 3.801 5 N -0.273 5.273 6 C 0.050 3.950 7 C -0.165 4.165 8 C -0.244 4.244 9 C -0.033 4.033 10 C -0.217 4.217 11 C 0.340 3.660 12 O -0.377 6.377 13 N -0.380 5.380 14 C 0.055 3.945 15 H 0.114 0.886 16 C -0.157 4.157 17 C -0.170 4.170 18 C 0.012 3.988 19 N -0.323 5.323 20 C -0.395 4.395 21 H 0.092 0.908 22 C -0.161 4.161 23 N -0.535 5.535 24 Si 0.706 3.294 25 H -0.215 1.215 26 H -0.230 1.230 27 H -0.195 1.195 28 C 0.025 3.975 29 C -0.190 4.190 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.222 0.778 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.067 0.933 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.099 -15.571 4.930 25.130 hybrid contribution 1.271 1.087 -0.965 1.931 sum 20.370 -14.484 3.965 25.307 Atomic orbital electron populations 1.21800 0.92610 1.02452 1.04193 1.22693 0.95421 0.81169 1.02003 1.86591 1.15283 1.29835 1.85188 1.19808 0.84682 0.88326 0.87288 1.67299 1.05943 1.32620 1.21460 1.21154 0.88855 0.95298 0.89684 1.20807 0.97968 0.94227 1.03466 1.21685 1.01416 0.92267 1.08999 1.21608 0.91258 0.99736 0.90723 1.20178 0.94269 0.92770 1.14528 1.17765 0.87895 0.82614 0.77714 1.90907 1.13943 1.85521 1.47348 1.46328 1.09767 1.05922 1.75998 1.21182 0.92776 0.82430 0.98159 0.88622 1.21307 0.97699 0.97097 0.99601 1.20866 0.97666 1.00207 0.98244 1.20448 0.95299 0.92811 0.90265 1.44190 1.03249 1.64039 1.20816 1.18691 0.80719 1.42896 0.97207 0.90776 1.25531 0.95025 0.97604 0.97947 1.69911 1.15342 1.42113 1.26166 0.86910 0.78063 0.82061 0.82359 1.21456 1.23002 1.19461 1.20621 0.93523 0.91152 0.92183 1.23215 1.00021 1.01169 0.94576 0.91325 0.91224 0.90523 0.91765 0.91803 0.89868 0.90175 0.90222 0.84090 0.83863 0.77776 0.92074 0.90939 0.91616 0.93422 0.91407 0.95128 0.92784 0.93921 0.95321 0.93260 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.06 0.78 6.03 37.16 0.22 1.01 16 3 O -0.26 -4.39 8.22 -39.73 -0.33 -4.72 16 4 C 0.38 5.70 7.51 -16.61 -0.12 5.58 16 5 N -0.55 -6.93 9.11 -9.21 -0.08 -7.02 16 6 C 0.19 1.81 6.78 -82.53 -0.56 1.25 16 7 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 8 C -0.22 -1.85 9.71 -39.50 -0.38 -2.24 16 9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 10 C -0.21 -2.99 5.90 -104.69 -0.62 -3.61 16 11 C 0.56 9.57 7.72 -12.48 -0.10 9.47 16 12 O -0.50 -11.19 14.86 -16.49 -0.24 -11.43 16 13 N -0.73 -10.63 4.93 -55.31 -0.27 -10.91 16 14 C 0.16 2.76 2.22 -68.39 -0.15 2.61 16 15 H 0.10 2.08 6.26 -51.93 -0.33 1.75 16 16 C -0.12 -1.73 5.34 -28.40 -0.15 -1.88 16 17 C -0.13 -2.13 5.20 -30.19 -0.16 -2.28 16 18 C 0.14 2.60 6.11 -5.20 -0.03 2.57 16 19 N -0.60 -14.26 2.14 -175.08 -0.37 -14.63 16 20 C -0.27 -7.60 9.92 -15.06 -0.15 -7.75 16 21 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 22 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 23 N -0.89 -28.16 13.97 55.49 0.78 -27.39 16 24 Si 0.88 22.75 25.26 -169.99 -4.29 18.45 16 25 H -0.29 -7.32 6.73 56.52 0.38 -6.94 16 26 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 27 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.15 3.39 4.22 -4.66 -0.02 3.37 16 29 C -0.15 -2.97 5.98 -24.76 -0.15 -3.12 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.32 16 34 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.94 6.52 -52.48 -0.34 0.60 16 40 H 0.39 4.10 6.58 -40.82 -0.27 3.83 16 41 H 0.06 0.72 7.85 -51.92 -0.41 0.31 16 42 H 0.07 1.04 6.28 -51.93 -0.33 0.71 16 43 H 0.07 1.22 6.93 -51.93 -0.36 0.86 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.32 7.99 -51.93 -0.42 0.90 16 46 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.04 1.06 3.40 -51.92 -0.18 0.88 16 49 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 50 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 51 H 0.07 1.59 8.14 -51.92 -0.42 1.16 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -36.31 398.07 -8.95 -45.26 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.04 Total: 2.38 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.09 Total: 4.00 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.04 Total: -59.94 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.57 Total: -16.15 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.29 Total: 18.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.31 -8.95 -45.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052828980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.377 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds