Wall clock time and date at job start Wed Apr 1 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46984 * 2 1 4 4 C 1.35422 * 116.99975 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79931 * 0.23141 * 4 3 2 6 6 C 1.31884 * 121.79844 * 180.29006 * 5 4 3 7 7 C 1.50704 * 119.40250 * 179.74825 * 6 5 4 8 8 C 1.38353 * 121.18606 * 359.47483 * 6 5 4 9 9 C 1.38335 * 119.45823 * 0.25253 * 8 6 5 10 10 C 1.39989 * 118.35083 * 0.02562 * 9 8 6 11 11 C 1.47517 * 120.59839 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00301 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00343 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00443 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.20449 * 35.64123 * 14 13 11 16 16 C 1.50122 * 109.20955 * 155.00080 * 14 13 11 17 17 C 1.52531 * 105.41861 * 218.02879 * 16 14 13 18 18 C 1.46236 * 114.27534 * 270.59678 * 17 16 14 19 19 N 1.50171 * 107.53729 * 58.40477 * 18 17 16 20 20 C 1.36932 * 120.53547 * 109.56180 * 19 18 17 21 21 H 1.07996 * 120.00342 * 320.23398 * 20 19 18 22 22 C 1.38820 * 119.99569 * 140.23606 * 20 19 18 23 23 N 1.31615 * 119.99876 * 156.34672 * 22 20 19 24 24 Si 1.86802 * 119.99766 * 336.34457 * 22 20 19 25 25 H 1.48496 * 109.47375 * 95.57475 * 24 22 20 26 26 H 1.48507 * 109.46784 * 215.57353 * 24 22 20 27 27 H 1.48496 * 109.47333 * 335.57259 * 24 22 20 28 28 C 1.43433 * 118.91805 * 289.59072 * 19 18 17 29 29 C 1.54839 * 109.21075 * 276.32302 * 14 13 11 30 30 H 1.09001 * 109.47002 * 300.00040 * 1 2 3 31 31 H 1.08995 * 109.47341 * 60.00056 * 1 2 3 32 32 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47002 * 239.99960 * 2 1 3 34 34 H 1.08995 * 109.47341 * 119.99944 * 2 1 3 35 35 H 1.08994 * 109.47303 * 269.72478 * 7 6 5 36 36 H 1.09004 * 109.46415 * 149.72434 * 7 6 5 37 37 H 1.08991 * 109.47234 * 29.73155 * 7 6 5 38 38 H 1.07998 * 120.26822 * 180.28294 * 8 6 5 39 39 H 1.08004 * 120.82502 * 179.97438 * 9 8 6 40 40 H 0.97005 * 119.99919 * 0.02562 * 13 11 10 41 41 H 1.09012 * 110.25067 * 337.00051 * 16 14 13 42 42 H 1.09001 * 110.25219 * 99.05426 * 16 14 13 43 43 H 1.09001 * 108.51937 * 31.83426 * 17 16 14 44 44 H 1.08998 * 108.51838 * 149.35509 * 17 16 14 45 45 H 1.09004 * 109.84326 * 177.91334 * 18 17 16 46 46 H 1.09002 * 109.84251 * 298.82919 * 18 17 16 47 47 H 0.97002 * 119.99641 * 180.02562 * 23 22 20 48 48 H 1.09009 * 108.15235 * 213.27925 * 28 19 18 49 49 H 1.08995 * 108.16692 * 330.05428 * 28 19 18 50 50 H 1.08999 * 109.35884 * 320.99975 * 29 14 13 51 51 H 1.09007 * 109.35762 * 80.58264 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1508 0.4732 -0.0057 6 6 5.4635 0.6003 -0.0007 7 6 6.3264 -0.6352 -0.0012 8 6 6.0625 1.8474 -0.0007 9 6 5.2714 2.9822 -0.0007 10 6 3.8806 2.8229 -0.0001 11 6 2.9901 3.9990 0.0005 12 8 1.7835 3.8481 0.0005 13 7 3.5137 5.2408 0.0010 14 6 2.6294 6.4088 0.0011 15 1 1.7459 6.1895 0.6005 16 6 3.3554 7.5780 0.6008 17 6 2.3104 8.3261 1.4224 18 6 1.5798 9.3502 0.6769 19 7 0.9091 8.6730 -0.4836 20 6 -0.4515 8.5209 -0.5089 21 1 -0.9829 8.2626 0.3951 22 6 -1.1478 8.6988 -1.6966 23 7 -2.3220 8.1280 -1.8628 24 14 -0.4181 9.7483 -3.0588 25 1 0.2889 8.8764 -4.0308 26 1 -1.5055 10.4838 -3.7532 27 1 0.5420 10.7193 -2.4752 28 6 1.7171 8.1877 -1.5648 29 6 2.1939 6.7182 -1.4523 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 6.5349 -0.9332 1.0263 36 1 7.2639 -0.4233 -0.5155 37 1 5.8047 -1.4425 -0.5150 38 1 7.1390 1.9343 -0.0012 39 1 5.7156 3.9666 -0.0003 40 1 4.4763 5.3613 0.0006 41 1 4.1635 7.2305 1.2446 42 1 3.7484 8.2220 -0.1860 43 1 1.5933 7.6032 1.8114 44 1 2.8095 8.8021 2.2664 45 1 0.8301 9.8116 1.3197 46 1 2.2731 10.1088 0.3137 47 1 -2.8084 8.2520 -2.6929 48 1 1.1462 8.2898 -2.4878 49 1 2.5993 8.8231 -1.6417 50 1 3.0377 6.5596 -2.1238 51 1 1.3794 6.0513 -1.7351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052828980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:11 Heat of formation + Delta-G solvation = -35.732227 kcal Electronic energy + Delta-G solvation = -31524.222743 eV Core-core repulsion = 27423.826497 eV Total energy + Delta-G solvation = -4100.396246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04822 -40.73958 -39.30527 -39.21351 -36.31264 -34.77225 -34.17674 -33.30528 -33.11495 -32.07031 -31.86662 -28.98693 -27.96437 -25.91296 -25.27287 -24.73140 -24.00472 -23.33950 -22.01094 -21.48876 -21.06541 -19.48684 -18.60616 -18.49906 -17.93634 -17.45300 -17.44611 -16.68173 -16.23638 -16.06487 -15.72487 -15.55507 -15.44823 -15.09636 -15.07035 -14.88204 -14.79073 -14.28642 -14.08455 -14.00555 -13.76124 -13.58224 -13.54328 -13.34198 -13.30121 -13.02878 -12.86607 -12.68067 -12.51769 -12.39312 -12.21622 -12.05291 -11.77512 -11.73537 -11.61182 -11.47737 -11.27049 -11.14024 -10.97677 -10.63119 -10.55961 -10.03849 -9.46917 -8.66585 -8.20687 -5.60360 -0.37497 0.22206 1.30551 1.38430 1.52000 1.86382 1.97636 2.14504 2.42845 2.74907 3.01174 3.09327 3.36758 3.68298 3.71589 3.86016 3.87384 3.97423 4.00422 4.07584 4.16768 4.21783 4.30302 4.37308 4.37941 4.42968 4.57323 4.68084 4.70397 4.74335 4.81253 4.82383 4.82831 4.90544 4.92590 4.97448 4.99603 5.09477 5.13274 5.15932 5.18566 5.27079 5.39519 5.40700 5.49848 5.60805 5.64489 5.95838 6.17597 6.22619 6.59564 6.76095 7.03269 7.34260 7.65586 8.09372 8.99665 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.002960 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.928478 B = 9458.551985 C =10635.925130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.305 6.305 4 C 0.351 3.649 5 N -0.562 5.562 6 C 0.180 3.820 7 C -0.105 4.105 8 C -0.206 4.206 9 C 0.005 3.995 10 C -0.242 4.242 11 C 0.550 3.450 12 O -0.572 6.572 13 N -0.707 5.707 14 C 0.168 3.832 15 H 0.040 0.960 16 C -0.106 4.106 17 C -0.128 4.128 18 C 0.133 3.867 19 N -0.613 5.613 20 C -0.256 4.256 21 H 0.025 0.975 22 C -0.025 4.025 23 N -0.952 5.952 24 Si 0.953 3.047 25 H -0.281 1.281 26 H -0.308 1.308 27 H -0.246 1.246 28 C 0.147 3.853 29 C -0.142 4.142 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.190 0.810 39 H 0.182 0.818 40 H 0.414 0.586 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.028 0.972 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.261 0.739 48 H 0.014 0.986 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.654 -14.122 4.973 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.211 6.211 4 C 0.171 3.829 5 N -0.288 5.288 6 C 0.042 3.958 7 C -0.162 4.162 8 C -0.226 4.226 9 C -0.021 4.021 10 C -0.249 4.249 11 C 0.338 3.662 12 O -0.451 6.451 13 N -0.360 5.360 14 C 0.064 3.936 15 H 0.058 0.942 16 C -0.144 4.144 17 C -0.167 4.167 18 C 0.011 3.989 19 N -0.337 5.337 20 C -0.386 4.386 21 H 0.043 0.957 22 C -0.221 4.221 23 N -0.596 5.596 24 Si 0.780 3.220 25 H -0.208 1.208 26 H -0.236 1.236 27 H -0.169 1.169 28 C 0.019 3.981 29 C -0.183 4.183 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.207 0.793 39 H 0.199 0.801 40 H 0.253 0.747 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.032 0.968 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 26.022 -14.834 4.913 30.354 hybrid contribution -0.738 0.686 -0.833 1.307 sum 25.284 -14.149 4.080 29.259 Atomic orbital electron populations 1.21828 0.92333 1.04082 1.02435 1.22811 0.95674 0.80265 1.02571 1.86554 1.17089 1.31623 1.85833 1.20109 0.84413 0.89509 0.88855 1.67352 1.07429 1.31869 1.22157 1.22036 0.88112 0.97798 0.87814 1.20954 0.98265 0.92254 1.04703 1.22215 1.03519 0.90780 1.06073 1.22043 0.88998 1.02265 0.88755 1.20082 0.95838 0.90930 1.18011 1.18376 0.87522 0.84077 0.76214 1.90878 1.17136 1.86540 1.50543 1.46017 1.10733 1.04362 1.74932 1.20842 0.92284 0.84825 0.95661 0.94156 1.21305 0.97607 0.95143 1.00302 1.20765 0.97555 0.98927 0.99484 1.20671 0.95469 0.94113 0.88624 1.44345 1.01663 1.65028 1.22652 1.18534 0.83329 1.41275 0.95464 0.95739 1.26258 0.95684 0.99041 1.01167 1.70075 1.17791 1.44481 1.27282 0.85683 0.77290 0.80058 0.78934 1.20830 1.23640 1.16932 1.20742 0.94316 0.92784 0.90249 1.23120 0.99202 0.98857 0.97169 0.92817 0.93151 0.87113 0.91211 0.90943 0.88405 0.87074 0.90850 0.79326 0.80086 0.74703 0.87822 0.88892 0.95356 0.89249 0.92741 0.91524 0.92995 0.96809 0.90780 0.89834 0.97406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 10.28 71.98 0.74 -3.03 16 2 C 0.06 1.68 6.03 71.98 0.43 2.11 16 3 O -0.31 -11.13 8.22 -66.36 -0.55 -11.68 16 4 C 0.35 10.95 7.51 85.13 0.64 11.59 16 5 N -0.56 -13.94 9.11 -296.06 -2.70 -16.64 16 6 C 0.18 2.91 6.78 42.58 0.29 3.20 16 7 C -0.10 -0.81 10.16 71.24 0.72 -0.09 16 8 C -0.21 -2.41 9.71 22.32 0.22 -2.19 16 9 C 0.00 0.07 9.64 22.72 0.22 0.29 16 10 C -0.24 -6.82 5.90 -19.91 -0.12 -6.93 16 11 C 0.55 19.72 7.72 86.69 0.67 20.39 16 12 O -0.57 -28.06 14.86 16.81 0.25 -27.81 16 13 N -0.71 -19.73 4.93 -447.16 -2.20 -21.94 16 14 C 0.17 5.86 2.22 44.69 0.10 5.96 16 15 H 0.04 1.88 6.26 -2.39 -0.01 1.87 16 16 C -0.11 -2.65 5.34 29.51 0.16 -2.49 16 17 C -0.13 -3.89 5.20 28.36 0.15 -3.75 16 18 C 0.13 4.87 6.11 83.58 0.51 5.38 16 19 N -0.61 -29.31 2.14 -707.83 -1.51 -30.82 16 20 C -0.26 -15.45 9.92 84.04 0.83 -14.61 16 21 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 22 C -0.03 -1.58 5.28 84.86 0.45 -1.13 16 23 N -0.95 -64.01 13.97 21.65 0.30 -63.71 16 24 Si 0.95 48.40 25.26 68.60 1.73 50.14 16 25 H -0.28 -13.87 6.73 99.48 0.67 -13.20 16 26 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 27 H -0.25 -11.42 7.11 99.48 0.71 -10.71 16 28 C 0.15 6.29 4.22 87.59 0.37 6.66 16 29 C -0.14 -5.72 5.98 31.87 0.19 -5.53 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 34 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.21 8.07 -2.38 -0.02 0.19 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 39 H 0.18 1.30 6.52 -2.91 -0.02 1.28 16 40 H 0.41 6.98 6.58 -92.70 -0.61 6.37 16 41 H 0.10 1.79 7.85 -2.38 -0.02 1.77 16 42 H 0.09 2.05 6.28 -2.39 -0.01 2.03 16 43 H 0.03 1.07 6.93 -2.39 -0.02 1.05 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 2.10 7.99 -2.38 -0.02 2.08 16 46 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 47 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 48 H 0.01 0.68 3.40 -2.38 -0.01 0.67 16 49 H 0.07 2.54 6.88 -2.39 -0.02 2.52 16 50 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 51 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 Total: -1.00 -93.53 398.07 2.19 -91.33 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.30 Total: 15.29 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 6.57 Total: 15.83 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -6.11 Total: -133.10 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.30 Total: -39.49 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.73 Total: 50.14 kcal Total: -93.53 2.19 -91.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052828980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.602 kcal (2) G-P(sol) polarization free energy of solvation -93.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds