Wall clock time and date at job start Wed Apr 1 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35538 * 125.67759 * 2 1 4 4 C 1.35452 * 108.86992 * 179.97438 * 3 2 1 5 5 C 1.39840 * 107.86566 * 359.73754 * 4 3 2 6 6 C 1.37644 * 125.67679 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.23619 * 0.02656 * 6 2 1 8 8 O 1.21700 * 119.99813 * 5.19683 * 7 6 2 9 9 N 1.34782 * 120.00224 * 185.19631 * 7 6 2 10 10 C 1.46506 * 119.99846 * 174.75650 * 9 7 6 11 11 H 1.09000 * 109.49885 * 34.92850 * 10 9 7 12 12 C 1.53190 * 109.52858 * 274.84058 * 10 9 7 13 13 N 1.46927 * 108.80284 * 185.35816 * 12 10 9 14 14 C 1.36931 * 120.63655 * 233.65523 * 13 12 10 15 15 H 1.07997 * 119.99934 * 148.15539 * 14 13 12 16 16 C 1.38819 * 120.00367 * 328.15630 * 14 13 12 17 17 N 1.31618 * 119.99930 * 167.44055 * 16 14 13 18 18 Si 1.86801 * 119.99768 * 347.44228 * 16 14 13 19 19 H 1.48500 * 109.46737 * 85.83664 * 18 16 14 20 20 H 1.48496 * 109.46897 * 205.83637 * 18 16 14 21 21 H 1.48498 * 109.47166 * 325.83567 * 18 16 14 22 22 C 1.46947 * 118.72533 * 53.63490 * 13 12 10 23 23 C 1.53085 * 108.77575 * 306.52214 * 22 13 12 24 24 C 1.53085 * 109.49259 * 294.36113 * 23 22 13 25 25 C 1.53116 * 109.15184 * 183.21348 * 24 23 22 26 26 O 1.42897 * 109.40016 * 57.49636 * 25 24 23 27 27 C 1.42903 * 114.13917 * 298.82016 * 26 25 24 28 28 C 1.53075 * 109.52883 * 174.64178 * 23 22 13 29 29 C 1.52952 * 109.49110 * 54.48278 * 23 22 13 30 30 H 1.09003 * 109.47379 * 271.62831 * 1 2 3 31 31 H 1.09003 * 109.46838 * 31.62626 * 1 2 3 32 32 H 1.08998 * 109.47052 * 151.62487 * 1 2 3 33 33 H 1.07995 * 125.56327 * 359.96389 * 3 2 1 34 34 H 1.07994 * 126.06652 * 180.02562 * 4 3 2 35 35 H 1.07992 * 126.45782 * 180.26080 * 5 4 3 36 36 H 0.96994 * 119.99965 * 354.75550 * 9 7 6 37 37 H 1.09001 * 109.58411 * 305.15953 * 12 10 9 38 38 H 1.09002 * 109.58216 * 65.42436 * 12 10 9 39 39 H 0.96992 * 119.99633 * 179.97438 * 17 16 14 40 40 H 1.08990 * 109.58641 * 186.73081 * 22 13 12 41 41 H 1.09004 * 109.58146 * 66.30900 * 22 13 12 42 42 H 1.08994 * 109.52585 * 63.31530 * 24 23 22 43 43 H 1.08996 * 109.58098 * 303.14477 * 24 23 22 44 44 H 1.08997 * 109.48333 * 297.51461 * 25 24 23 45 45 H 1.08999 * 109.47850 * 177.47408 * 25 24 23 46 46 H 1.09008 * 109.47692 * 181.15020 * 27 26 25 47 47 H 1.08998 * 109.48311 * 301.18759 * 27 26 25 48 48 H 1.09010 * 109.52084 * 296.66347 * 28 23 22 49 49 H 1.09000 * 109.52201 * 56.84870 * 28 23 22 50 50 H 1.09005 * 109.46035 * 58.79881 * 29 23 22 51 51 H 1.09000 * 109.46101 * 178.75324 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2678 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6258 -2.7649 -0.0953 9 7 2.7081 -3.5139 0.1068 10 6 2.2471 -4.8997 0.2226 11 1 1.3439 -5.0336 -0.3727 12 6 1.9440 -5.2176 1.6902 13 7 1.6078 -6.6432 1.8062 14 6 0.4412 -7.0385 2.4044 15 1 -0.0593 -7.9357 2.0715 16 6 -0.0982 -6.2860 3.4387 17 7 -1.3282 -6.5154 3.8473 18 14 0.9216 -4.9480 4.2506 19 1 0.7887 -3.6869 3.4778 20 1 0.4393 -4.7314 5.6383 21 1 2.3473 -5.3621 4.2811 22 6 2.5472 -7.6365 1.2676 23 6 2.8463 -7.2905 -0.1933 24 6 1.5729 -7.4519 -1.0275 25 6 1.8989 -7.1821 -2.4990 26 8 2.9287 -8.0748 -2.9285 27 6 4.1590 -7.9341 -2.2152 28 6 3.9244 -8.2341 -0.7323 29 6 3.3384 -5.8452 -0.2849 30 1 -0.3634 0.0292 1.0273 31 1 -0.3633 0.8751 -0.5389 32 1 -0.3633 -0.9042 -0.4884 33 1 1.9082 2.1236 -0.0006 34 1 4.4132 1.3611 0.0011 35 1 4.4582 -1.3144 0.0131 36 1 3.6579 -3.3171 0.1066 37 1 2.8204 -4.9981 2.3001 38 1 1.1027 -4.6130 2.0288 39 1 -1.7049 -5.9898 4.5703 40 1 2.1012 -8.6294 1.3241 41 1 3.4717 -7.6156 1.8448 42 1 0.8205 -6.7416 -0.6850 43 1 1.1916 -8.4672 -0.9192 44 1 2.2389 -6.1529 -2.6133 45 1 1.0058 -7.3394 -3.1039 46 1 4.8934 -8.6331 -2.6158 47 1 4.5289 -6.9148 -2.3259 48 1 4.8512 -8.0823 -0.1788 49 1 3.5952 -9.2668 -0.6171 50 1 4.2338 -5.7270 0.3254 51 1 3.5723 -5.6063 -1.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089922568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:35 Heat of formation + Delta-G solvation = -3.149939 kcal Electronic energy + Delta-G solvation = -32879.906684 eV Core-core repulsion = 28780.923313 eV Total energy + Delta-G solvation = -4098.983372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39196 -40.35853 -38.80834 -37.09602 -34.54846 -33.85835 -32.85173 -31.44474 -30.92407 -30.41468 -28.55797 -27.51096 -26.53130 -25.50539 -23.59333 -23.25904 -23.16378 -21.39982 -20.64241 -20.33415 -19.71498 -18.30512 -17.56626 -16.87262 -16.23361 -15.88918 -15.75897 -15.61725 -15.49203 -15.18304 -14.60961 -14.35293 -14.20084 -14.02591 -13.89053 -13.63927 -13.45304 -13.30891 -13.27589 -12.73018 -12.52913 -12.42294 -12.30383 -12.12840 -12.03158 -11.75897 -11.62737 -11.46444 -11.12781 -11.06933 -10.92164 -10.53448 -10.30969 -10.06538 -10.00180 -9.74022 -9.68490 -9.46940 -9.21702 -8.90223 -8.81806 -8.55664 -8.25808 -6.93015 -5.94250 -3.38462 1.50822 2.62318 2.68788 3.33618 3.43359 3.45042 3.47719 3.55041 4.03788 4.51738 4.74670 4.77027 4.78515 4.89323 4.91759 5.03343 5.13281 5.21384 5.24372 5.28019 5.30869 5.33486 5.35347 5.44508 5.46839 5.57593 5.62751 5.66954 5.75977 5.83082 5.91492 5.95065 5.96874 6.03158 6.10008 6.12960 6.23211 6.37168 6.42792 6.48136 6.55203 6.63510 6.66650 6.69804 6.80798 6.87586 6.91925 7.13762 7.36076 7.69085 7.98054 8.33884 8.40005 8.91384 9.70205 10.06684 11.21525 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008392 B = 0.004874 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.798243 B = 5743.143601 C = 7972.002775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.409 5.409 3 C 0.008 3.992 4 C -0.209 4.209 5 C -0.147 4.147 6 C -0.045 4.045 7 C 0.583 3.417 8 O -0.539 6.539 9 N -0.713 5.713 10 C 0.127 3.873 11 H 0.097 0.903 12 C 0.114 3.886 13 N -0.598 5.598 14 C -0.261 4.261 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.910 5.910 18 Si 0.891 3.109 19 H -0.287 1.287 20 H -0.305 1.305 21 H -0.272 1.272 22 C 0.159 3.841 23 C -0.071 4.071 24 C -0.138 4.138 25 C 0.059 3.941 26 O -0.387 6.387 27 C 0.061 3.939 28 C -0.142 4.142 29 C -0.112 4.112 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.396 0.604 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.318 9.611 -11.373 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.082 5.082 3 C -0.128 4.128 4 C -0.233 4.233 5 C -0.174 4.174 6 C -0.159 4.159 7 C 0.371 3.629 8 O -0.418 6.418 9 N -0.364 5.364 10 C 0.022 3.978 11 H 0.115 0.885 12 C -0.013 4.013 13 N -0.321 5.321 14 C -0.389 4.389 15 H 0.104 0.896 16 C -0.170 4.170 17 N -0.552 5.552 18 Si 0.723 3.277 19 H -0.215 1.215 20 H -0.234 1.234 21 H -0.197 1.197 22 C 0.033 3.967 23 C -0.073 4.073 24 C -0.176 4.176 25 C -0.017 4.017 26 O -0.306 6.306 27 C -0.015 4.015 28 C -0.180 4.180 29 C -0.150 4.150 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.184 0.816 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.231 0.769 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.846 9.262 -11.419 18.271 hybrid contribution 0.991 1.359 0.913 1.913 sum 11.837 10.620 -10.506 19.060 Atomic orbital electron populations 1.22358 0.75985 1.05564 1.04107 1.43890 1.06951 1.04991 1.52343 1.21994 0.90764 0.91490 1.08518 1.20776 0.95913 0.94970 1.11626 1.21311 0.94379 0.95474 1.06196 1.20206 0.90476 0.87842 1.17349 1.17014 0.85886 0.83447 0.76601 1.90816 1.16140 1.84616 1.50203 1.45770 1.09270 1.06800 1.74547 1.21855 0.98120 0.77777 1.00091 0.88465 1.21829 0.99460 0.87326 0.92677 1.44210 1.21150 0.98807 1.67940 1.18870 0.97272 1.11456 1.11321 0.89550 1.25348 0.96279 0.98554 0.96829 1.69752 1.13446 1.42010 1.30028 0.86910 0.80961 0.82078 0.77780 1.21528 1.23351 1.19736 1.21005 0.92782 0.93555 0.89329 1.20988 0.94682 0.93248 0.98386 1.22170 0.98105 1.03672 0.93643 1.22668 0.90614 0.92664 0.95783 1.87877 1.21982 1.60875 1.59877 1.22555 0.86562 1.00592 0.91824 1.22163 0.99251 1.00474 0.96108 1.21833 0.97854 0.94778 1.00530 0.90530 0.90046 0.87287 0.81601 0.84155 0.84024 0.76949 0.95639 0.90238 0.92727 0.91450 0.95670 0.89228 0.91179 0.93522 0.89350 0.89521 0.93453 0.91104 0.90790 0.91753 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.68 59.85 0.64 1.36 16 2 N -0.41 -5.48 3.16 -120.24 -0.38 -5.86 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -2.26 10.81 -39.98 -0.43 -2.69 16 5 C -0.15 -1.80 10.36 -39.11 -0.41 -2.20 16 6 C -0.04 -0.67 6.88 -81.98 -0.56 -1.23 16 7 C 0.58 10.18 7.74 -12.85 -0.10 10.08 16 8 O -0.54 -11.33 14.24 5.19 0.07 -11.25 16 9 N -0.71 -11.00 5.07 -54.99 -0.28 -11.28 16 10 C 0.13 2.23 2.31 -67.80 -0.16 2.07 16 11 H 0.10 1.94 5.64 -51.93 -0.29 1.65 16 12 C 0.11 2.49 3.73 -3.71 -0.01 2.47 16 13 N -0.60 -13.75 2.26 -172.37 -0.39 -14.13 16 14 C -0.26 -7.21 10.06 -15.06 -0.15 -7.36 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.03 0.86 5.35 -17.43 -0.09 0.77 16 17 N -0.91 -28.27 13.97 55.49 0.78 -27.50 16 18 Si 0.89 23.32 24.24 -169.99 -4.12 19.20 16 19 H -0.29 -7.58 6.40 56.52 0.36 -7.22 16 20 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 21 H -0.27 -6.89 6.59 56.52 0.37 -6.52 16 22 C 0.16 2.96 5.20 -3.75 -0.02 2.94 16 23 C -0.07 -1.06 0.51 -154.41 -0.08 -1.14 16 24 C -0.14 -2.22 4.48 -26.63 -0.12 -2.34 16 25 C 0.06 0.83 6.57 37.22 0.24 1.08 16 26 O -0.39 -5.49 10.76 -35.23 -0.38 -5.87 16 27 C 0.06 0.71 6.57 37.21 0.24 0.96 16 28 C -0.14 -1.74 4.92 -26.64 -0.13 -1.87 16 29 C -0.11 -1.59 3.63 -26.73 -0.10 -1.68 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.54 6.13 -51.93 -0.32 1.22 16 33 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.14 1.36 7.45 -52.49 -0.39 0.97 16 36 H 0.40 4.75 7.50 -40.82 -0.31 4.44 16 37 H 0.03 0.56 6.93 -51.93 -0.36 0.20 16 38 H 0.08 2.04 4.36 -51.93 -0.23 1.82 16 39 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 1.70 5.92 -51.93 -0.31 1.39 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.64 6.64 -51.93 -0.34 0.29 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 47 H 0.05 0.51 6.59 -51.93 -0.34 0.17 16 48 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 0.78 5.03 -51.93 -0.26 0.52 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -34.44 380.87 -8.22 -42.66 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.84 Total: 7.19 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.43 Total: 1.09 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.27 Total: -58.76 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.31 Total: -17.12 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.12 Total: 19.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.44 -8.22 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089922568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.512 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds