Wall clock time and date at job start Wed Apr 1 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36446 * 124.84936 * 2 1 4 4 C 1.34487 * 108.85287 * 179.77052 * 3 2 1 5 5 C 1.46678 * 106.33527 * 0.37907 * 4 3 2 6 6 C 1.47264 * 126.94582 * 179.88835 * 5 4 3 7 7 O 1.21630 * 120.00266 * 179.68416 * 6 5 4 8 8 N 1.34775 * 119.99826 * 359.68262 * 6 5 4 9 9 C 1.46501 * 120.00276 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50005 * 325.07415 * 9 8 6 11 11 C 1.53201 * 109.52911 * 85.15919 * 9 8 6 12 12 N 1.46923 * 108.81034 * 174.63371 * 11 9 8 13 13 C 1.36930 * 120.63892 * 126.37542 * 12 11 9 14 14 H 1.08003 * 119.99956 * 331.87110 * 13 12 11 15 15 C 1.38813 * 120.00030 * 151.86052 * 13 12 11 16 16 N 1.31618 * 120.00009 * 343.10377 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 163.10047 * 15 13 12 18 18 H 1.48503 * 109.47280 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47350 * 120.00238 * 17 15 13 20 20 H 1.48507 * 109.46693 * 240.00420 * 17 15 13 21 21 C 1.46955 * 118.72766 * 306.38179 * 12 11 9 22 22 C 1.53084 * 108.76891 * 53.47873 * 21 12 11 23 23 C 1.53070 * 109.53458 * 185.32888 * 22 21 12 24 24 C 1.53118 * 109.15978 * 183.24338 * 23 22 21 25 25 O 1.42900 * 109.40669 * 57.47264 * 24 23 22 26 26 C 1.42895 * 114.14243 * 298.83193 * 25 24 23 27 27 C 1.53087 * 109.49258 * 65.60449 * 22 21 12 28 28 C 1.52959 * 109.48732 * 305.49165 * 22 21 12 29 29 C 1.34652 * 124.85008 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46867 * 269.96890 * 1 2 3 31 31 H 1.09003 * 109.46980 * 29.97343 * 1 2 3 32 32 H 1.09002 * 109.46800 * 149.97156 * 1 2 3 33 33 H 1.07997 * 125.57256 * 359.97438 * 3 2 1 34 34 H 1.08007 * 126.82918 * 180.25501 * 4 3 2 35 35 H 0.97001 * 119.99925 * 0.02562 * 8 6 5 36 36 H 1.08997 * 109.58005 * 294.43516 * 11 9 8 37 37 H 1.09003 * 109.57681 * 54.83453 * 11 9 8 38 38 H 0.97000 * 119.99648 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.58429 * 293.69871 * 21 12 11 40 40 H 1.08995 * 109.59077 * 173.26450 * 21 12 11 41 41 H 1.09007 * 109.52787 * 63.33878 * 23 22 21 42 42 H 1.08998 * 109.57799 * 303.18058 * 23 22 21 43 43 H 1.09005 * 109.48047 * 297.49241 * 24 23 22 44 44 H 1.08999 * 109.48251 * 177.45759 * 24 23 22 45 45 H 1.08997 * 109.48396 * 181.15329 * 26 25 24 46 46 H 1.08994 * 109.49112 * 301.20459 * 26 25 24 47 47 H 1.09005 * 109.52032 * 296.70182 * 27 22 21 48 48 H 1.09000 * 109.52434 * 56.89222 * 27 22 21 49 49 H 1.09002 * 109.45948 * 181.26283 * 28 22 21 50 50 H 1.08990 * 109.46101 * 301.23330 * 28 22 21 51 51 H 1.08002 * 125.80459 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 0.0051 5 6 3.5462 -0.7176 -0.0008 6 6 4.7284 -1.5957 -0.0007 7 8 4.5885 -2.8040 -0.0002 8 7 5.9653 -1.0606 -0.0010 9 6 7.1415 -1.9341 -0.0014 10 1 6.9315 -2.8273 0.5869 11 6 7.4795 -2.3372 -1.4403 12 7 8.7324 -3.1046 -1.4353 13 6 8.7949 -4.3423 -2.0177 14 1 7.9089 -4.9573 -2.0755 15 6 9.9970 -4.8066 -2.5339 16 7 10.9804 -3.9645 -2.7708 17 14 10.2188 -6.6265 -2.8922 18 1 8.9738 -7.3556 -2.5405 19 1 10.5121 -6.8146 -4.3357 20 1 11.3469 -7.1560 -2.0846 21 6 9.9172 -2.5184 -0.7933 22 6 9.5518 -2.1108 0.6363 23 6 10.7329 -1.3781 1.2774 24 6 10.3887 -1.0461 2.7320 25 8 10.0712 -2.2509 3.4317 26 6 8.9434 -2.9527 2.9050 27 6 9.2296 -3.3619 1.4576 28 6 8.3315 -1.1890 0.6080 29 6 2.2345 -1.1050 -0.0005 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8898 -0.5143 33 1 1.8829 2.1373 -0.0004 34 1 4.3981 1.4018 0.0103 35 1 6.0769 -0.0970 -0.0011 36 1 6.6760 -2.9522 -1.8457 37 1 7.6013 -1.4427 -2.0512 38 1 11.8205 -4.2891 -3.1312 39 1 10.2389 -1.6400 -1.3528 40 1 10.7213 -3.2538 -0.7694 41 1 10.9302 -0.4562 0.7302 42 1 11.6170 -2.0150 1.2485 43 1 9.5312 -0.3737 2.7582 44 1 11.2434 -0.5643 3.2069 45 1 8.7572 -3.8437 3.5046 46 1 8.0668 -2.3056 2.9333 47 1 8.3533 -3.8568 1.0389 48 1 10.0803 -4.0430 1.4329 49 1 8.0853 -0.8811 1.6242 50 1 8.5555 -0.3085 0.0060 51 1 1.8767 -2.1241 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089936273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:45 Heat of formation + Delta-G solvation = -9.216868 kcal Electronic energy + Delta-G solvation = -32150.926187 eV Core-core repulsion = 28051.679734 eV Total energy + Delta-G solvation = -4099.246453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.30317 -40.06648 -38.67857 -36.77313 -34.21413 -33.45415 -32.97515 -31.20391 -30.63421 -29.46285 -28.97059 -27.11244 -26.66280 -25.35775 -23.23060 -23.08902 -22.81651 -21.36937 -20.38515 -19.87791 -19.58196 -18.27225 -17.46119 -16.64777 -16.04708 -15.64260 -15.63386 -15.60455 -15.11221 -14.66341 -14.59930 -14.27268 -14.21988 -13.76494 -13.61644 -13.57800 -13.27509 -13.24175 -13.04123 -12.75506 -12.48790 -12.44050 -12.31510 -12.08956 -11.80315 -11.33216 -11.28275 -10.96164 -10.82267 -10.78210 -10.65795 -10.32844 -10.12628 -9.94566 -9.86039 -9.71130 -9.54129 -9.34839 -8.84910 -8.79570 -8.67346 -8.45010 -8.28300 -6.60699 -5.74296 -3.16168 1.82749 2.32133 2.63423 3.42071 3.50200 3.53588 3.69482 3.84434 4.23801 4.41770 4.56214 4.73015 4.76069 4.86918 5.01366 5.07508 5.23529 5.26236 5.34677 5.36608 5.45541 5.49665 5.55127 5.58528 5.67206 5.77624 5.78654 5.85375 5.92087 5.97747 6.02525 6.09817 6.24660 6.26702 6.33974 6.44032 6.58843 6.62796 6.76801 6.78217 6.83152 6.88505 6.94237 7.01926 7.05680 7.13563 7.36108 7.56211 7.67692 7.88360 7.99793 8.49536 8.72442 9.26623 9.88874 10.44855 11.34278 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.003417 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.896144 B = 8193.349255 C =10006.260036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.169 4.169 5 C -0.226 4.226 6 C 0.587 3.413 7 O -0.550 6.550 8 N -0.718 5.718 9 C 0.126 3.874 10 H 0.089 0.911 11 C 0.141 3.859 12 N -0.584 5.584 13 C -0.246 4.246 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.184 3.816 22 C -0.077 4.077 23 C -0.140 4.140 24 C 0.062 3.938 25 O -0.389 6.389 26 C 0.059 3.941 27 C -0.134 4.134 28 C -0.109 4.109 29 C 0.069 3.931 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.393 0.607 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.060 0.940 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.142 13.238 9.249 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.148 4.148 4 C -0.193 4.193 5 C -0.236 4.236 6 C 0.374 3.626 7 O -0.429 6.429 8 N -0.368 5.368 9 C 0.021 3.979 10 H 0.107 0.893 11 C 0.014 3.986 12 N -0.306 5.306 13 C -0.376 4.376 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.548 5.548 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.058 3.942 22 C -0.080 4.080 23 C -0.178 4.178 24 C -0.015 4.015 25 O -0.308 6.308 26 C -0.018 4.018 27 C -0.171 4.171 28 C -0.147 4.147 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.337 12.266 9.308 21.733 hybrid contribution 0.046 -0.164 -0.589 0.613 sum -15.291 12.103 8.719 21.361 Atomic orbital electron populations 1.22098 0.77066 1.04604 1.03422 1.43599 1.06668 1.05970 1.56409 1.21703 0.90628 0.91183 1.11261 1.22051 0.96118 0.93369 1.07782 1.20487 0.92778 0.93312 1.17060 1.17350 0.82393 0.87046 0.75763 1.90790 1.86509 1.14626 1.50999 1.45888 1.05611 1.09988 1.75296 1.21744 0.82811 0.93133 1.00196 0.89282 1.21212 0.90330 0.95037 0.92050 1.43951 1.05548 1.17423 1.63689 1.19236 0.96047 0.91049 1.31277 0.91563 1.25001 0.97985 0.97860 0.98621 1.70036 1.05107 1.32392 1.47251 0.86264 0.77814 0.85573 0.77450 1.20159 1.21821 1.21574 1.20839 0.90637 0.97341 0.85427 1.21168 0.93004 0.94061 0.99747 1.22128 0.99241 1.01048 0.95404 1.22563 0.99588 0.86649 0.92665 1.87849 1.49738 1.37569 1.55644 1.22674 0.87829 0.95823 0.95437 1.22116 1.03548 0.97972 0.93489 1.21809 0.94970 0.98415 0.99528 1.21800 0.89910 0.91689 1.03143 0.90761 0.89704 0.89613 0.81804 0.83771 0.77356 0.92364 0.96567 0.93779 0.96327 0.89123 0.91349 0.90949 0.93642 0.89786 0.89720 0.93692 0.89713 0.91388 0.92781 0.92156 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.04 59.85 0.66 0.97 16 2 N -0.45 -3.98 3.09 -124.52 -0.38 -4.36 16 3 C -0.02 -0.19 11.34 -16.82 -0.19 -0.38 16 4 C -0.17 -1.80 10.56 -37.50 -0.40 -2.20 16 5 C -0.23 -3.10 6.29 -103.35 -0.65 -3.75 16 6 C 0.59 9.96 7.78 -12.59 -0.10 9.87 16 7 O -0.55 -11.53 16.57 5.25 0.09 -11.45 16 8 N -0.72 -11.14 5.08 -54.80 -0.28 -11.41 16 9 C 0.13 2.30 2.27 -67.80 -0.15 2.14 16 10 H 0.09 1.84 5.71 -51.93 -0.30 1.54 16 11 C 0.14 3.11 6.09 -3.71 -0.02 3.09 16 12 N -0.58 -14.54 2.50 -172.36 -0.43 -14.97 16 13 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 14 H 0.07 1.88 7.89 -52.48 -0.41 1.46 16 15 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 16 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 17 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.18 4.23 3.98 -3.75 -0.01 4.21 16 22 C -0.08 -1.40 0.51 -154.41 -0.08 -1.48 16 23 C -0.14 -2.21 4.92 -26.63 -0.13 -2.34 16 24 C 0.06 0.87 6.57 37.22 0.24 1.12 16 25 O -0.39 -6.35 10.76 -35.23 -0.38 -6.73 16 26 C 0.06 0.94 6.57 37.22 0.24 1.18 16 27 C -0.13 -2.48 4.48 -26.63 -0.12 -2.60 16 28 C -0.11 -1.77 3.63 -26.72 -0.10 -1.86 16 29 C 0.07 0.81 11.12 -16.84 -0.19 0.63 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.09 0.31 8.13 -51.93 -0.42 -0.12 16 33 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.25 7.70 -52.48 -0.40 0.85 16 35 H 0.39 4.94 7.73 -40.82 -0.32 4.62 16 36 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.59 6.59 -51.93 -0.34 0.25 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.04 0.69 6.64 -51.93 -0.34 0.35 16 47 H 0.08 1.74 5.92 -51.93 -0.31 1.43 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.05 0.79 5.03 -51.93 -0.26 0.53 16 50 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 51 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -34.01 392.90 -9.14 -43.14 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.04 Total: 6.60 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.22 Total: 1.63 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.47 Total: -56.23 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.29 Total: -18.18 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.01 -9.14 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089936273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.927 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds