Wall clock time and date at job start Wed Apr 1 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36446 * 124.84936 * 2 1 4 4 C 1.34487 * 108.85287 * 179.77052 * 3 2 1 5 5 C 1.46678 * 106.33527 * 0.37907 * 4 3 2 6 6 C 1.47264 * 126.94582 * 179.88835 * 5 4 3 7 7 O 1.21630 * 120.00266 * 179.68416 * 6 5 4 8 8 N 1.34775 * 119.99826 * 359.68262 * 6 5 4 9 9 C 1.46501 * 120.00276 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50005 * 325.07415 * 9 8 6 11 11 C 1.53201 * 109.52911 * 85.15919 * 9 8 6 12 12 N 1.46923 * 108.81034 * 174.63371 * 11 9 8 13 13 C 1.36930 * 120.63892 * 126.37542 * 12 11 9 14 14 H 1.08003 * 119.99956 * 331.87110 * 13 12 11 15 15 C 1.38813 * 120.00030 * 151.86052 * 13 12 11 16 16 N 1.31618 * 120.00009 * 343.10377 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 163.10047 * 15 13 12 18 18 H 1.48503 * 109.47280 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47350 * 120.00238 * 17 15 13 20 20 H 1.48507 * 109.46693 * 240.00420 * 17 15 13 21 21 C 1.46955 * 118.72766 * 306.38179 * 12 11 9 22 22 C 1.53084 * 108.76891 * 53.47873 * 21 12 11 23 23 C 1.53070 * 109.53458 * 185.32888 * 22 21 12 24 24 C 1.53118 * 109.15978 * 183.24338 * 23 22 21 25 25 O 1.42900 * 109.40669 * 57.47264 * 24 23 22 26 26 C 1.42895 * 114.14243 * 298.83193 * 25 24 23 27 27 C 1.53087 * 109.49258 * 65.60449 * 22 21 12 28 28 C 1.52959 * 109.48732 * 305.49165 * 22 21 12 29 29 C 1.34652 * 124.85008 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46867 * 269.96890 * 1 2 3 31 31 H 1.09003 * 109.46980 * 29.97343 * 1 2 3 32 32 H 1.09002 * 109.46800 * 149.97156 * 1 2 3 33 33 H 1.07997 * 125.57256 * 359.97438 * 3 2 1 34 34 H 1.08007 * 126.82918 * 180.25501 * 4 3 2 35 35 H 0.97001 * 119.99925 * 0.02562 * 8 6 5 36 36 H 1.08997 * 109.58005 * 294.43516 * 11 9 8 37 37 H 1.09003 * 109.57681 * 54.83453 * 11 9 8 38 38 H 0.97000 * 119.99648 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.58429 * 293.69871 * 21 12 11 40 40 H 1.08995 * 109.59077 * 173.26450 * 21 12 11 41 41 H 1.09007 * 109.52787 * 63.33878 * 23 22 21 42 42 H 1.08998 * 109.57799 * 303.18058 * 23 22 21 43 43 H 1.09005 * 109.48047 * 297.49241 * 24 23 22 44 44 H 1.08999 * 109.48251 * 177.45759 * 24 23 22 45 45 H 1.08997 * 109.48396 * 181.15329 * 26 25 24 46 46 H 1.08994 * 109.49112 * 301.20459 * 26 25 24 47 47 H 1.09005 * 109.52032 * 296.70182 * 27 22 21 48 48 H 1.09000 * 109.52434 * 56.89222 * 27 22 21 49 49 H 1.09002 * 109.45948 * 181.26283 * 28 22 21 50 50 H 1.08990 * 109.46101 * 301.23330 * 28 22 21 51 51 H 1.08002 * 125.80459 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 0.0051 5 6 3.5462 -0.7176 -0.0008 6 6 4.7284 -1.5957 -0.0007 7 8 4.5885 -2.8040 -0.0002 8 7 5.9653 -1.0606 -0.0010 9 6 7.1415 -1.9341 -0.0014 10 1 6.9315 -2.8273 0.5869 11 6 7.4795 -2.3372 -1.4403 12 7 8.7324 -3.1046 -1.4353 13 6 8.7949 -4.3423 -2.0177 14 1 7.9089 -4.9573 -2.0755 15 6 9.9970 -4.8066 -2.5339 16 7 10.9804 -3.9645 -2.7708 17 14 10.2188 -6.6265 -2.8922 18 1 8.9738 -7.3556 -2.5405 19 1 10.5121 -6.8146 -4.3357 20 1 11.3469 -7.1560 -2.0846 21 6 9.9172 -2.5184 -0.7933 22 6 9.5518 -2.1108 0.6363 23 6 10.7329 -1.3781 1.2774 24 6 10.3887 -1.0461 2.7320 25 8 10.0712 -2.2509 3.4317 26 6 8.9434 -2.9527 2.9050 27 6 9.2296 -3.3619 1.4576 28 6 8.3315 -1.1890 0.6080 29 6 2.2345 -1.1050 -0.0005 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8898 -0.5143 33 1 1.8829 2.1373 -0.0004 34 1 4.3981 1.4018 0.0103 35 1 6.0769 -0.0970 -0.0011 36 1 6.6760 -2.9522 -1.8457 37 1 7.6013 -1.4427 -2.0512 38 1 11.8205 -4.2891 -3.1312 39 1 10.2389 -1.6400 -1.3528 40 1 10.7213 -3.2538 -0.7694 41 1 10.9302 -0.4562 0.7302 42 1 11.6170 -2.0150 1.2485 43 1 9.5312 -0.3737 2.7582 44 1 11.2434 -0.5643 3.2069 45 1 8.7572 -3.8437 3.5046 46 1 8.0668 -2.3056 2.9333 47 1 8.3533 -3.8568 1.0389 48 1 10.0803 -4.0430 1.4329 49 1 8.0853 -0.8811 1.6242 50 1 8.5555 -0.3085 0.0060 51 1 1.8767 -2.1241 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089936273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:44 Heat of formation + Delta-G solvation = -31.641459 kcal Electronic energy + Delta-G solvation = -32151.898591 eV Core-core repulsion = 28051.679734 eV Total energy + Delta-G solvation = -4100.218857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11602 -41.49452 -39.99732 -38.30989 -35.87297 -35.08150 -33.74558 -33.01745 -31.99833 -30.82101 -29.95577 -28.67476 -27.37849 -27.29457 -24.58490 -24.55217 -24.14618 -22.83910 -21.73389 -20.95726 -20.72308 -19.44662 -18.73968 -18.51216 -17.53666 -16.88567 -16.79075 -16.49864 -16.41246 -16.31360 -16.02411 -15.63645 -15.42346 -15.16496 -15.10147 -15.02947 -14.75084 -14.43083 -14.20591 -13.88387 -13.80656 -13.26915 -13.20710 -13.09861 -13.03396 -12.98385 -12.90571 -12.74946 -12.67844 -12.33291 -12.16038 -12.08204 -11.91334 -11.81849 -11.59432 -11.13427 -11.01920 -10.79715 -10.59706 -10.25061 -10.08184 -9.47806 -9.25696 -8.65614 -7.90003 -5.34865 0.81527 1.41078 1.43380 1.54263 1.57730 1.94477 2.40226 2.55133 2.65766 3.04204 3.23490 3.62488 3.75313 3.86713 3.96292 4.02458 4.06810 4.12459 4.18497 4.20724 4.26125 4.36042 4.37871 4.41995 4.49070 4.53709 4.58491 4.63814 4.76373 4.76811 4.78533 4.87536 4.91955 4.99225 5.02088 5.05457 5.11702 5.14217 5.25076 5.29377 5.32441 5.45673 5.57051 5.63007 5.65671 5.75554 5.81135 6.10516 6.33670 6.37201 6.39810 6.77494 7.13399 7.44701 7.82698 8.33275 9.15253 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.003417 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.896144 B = 8193.349255 C =10006.260036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.008 4.008 4 C -0.183 4.183 5 C -0.263 4.263 6 C 0.582 3.418 7 O -0.603 6.603 8 N -0.705 5.705 9 C 0.144 3.856 10 H 0.064 0.936 11 C 0.145 3.855 12 N -0.599 5.599 13 C -0.260 4.260 14 H 0.050 0.950 15 C -0.040 4.040 16 N -0.927 5.927 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.286 1.286 21 C 0.194 3.806 22 C -0.071 4.071 23 C -0.136 4.136 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.069 3.931 27 C -0.129 4.129 28 C -0.097 4.097 29 C 0.062 3.938 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.162 0.838 35 H 0.411 0.589 36 H 0.026 0.974 37 H 0.017 0.983 38 H 0.251 0.749 39 H 0.001 0.999 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 16.331 10.994 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.206 4.206 5 C -0.273 4.273 6 C 0.372 3.628 7 O -0.486 6.486 8 N -0.356 5.356 9 C 0.038 3.962 10 H 0.082 0.918 11 C 0.018 3.982 12 N -0.322 5.322 13 C -0.390 4.390 14 H 0.068 0.932 15 C -0.236 4.236 16 N -0.573 5.573 17 Si 0.787 3.213 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.212 1.212 21 C 0.069 3.931 22 C -0.073 4.073 23 C -0.174 4.174 24 C -0.014 4.014 25 O -0.318 6.318 26 C -0.007 4.007 27 C -0.167 4.167 28 C -0.135 4.135 29 C -0.075 4.075 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.221 0.779 34 H 0.180 0.820 35 H 0.248 0.752 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.095 0.905 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.994 15.429 11.068 25.482 hybrid contribution 0.433 -1.097 -1.207 1.688 sum -16.561 14.332 9.861 24.019 Atomic orbital electron populations 1.22446 0.74289 1.06239 1.04907 1.43920 1.08346 1.05109 1.54428 1.22333 0.89951 0.92560 1.08617 1.22301 0.97946 0.91738 1.08641 1.20371 0.92021 0.94690 1.20262 1.17953 0.83520 0.86846 0.74456 1.90754 1.87242 1.17064 1.53519 1.45661 1.04509 1.10555 1.74846 1.21252 0.84725 0.93355 0.96896 0.91827 1.21211 0.88255 0.93942 0.94762 1.44109 1.06903 1.17082 1.64089 1.19344 0.95788 0.92399 1.31497 0.93189 1.25635 0.97688 1.01439 0.98862 1.70158 1.05277 1.33809 1.48024 0.85342 0.77618 0.81177 0.77176 1.19930 1.21480 1.21208 1.20643 0.89019 0.95223 0.88230 1.20996 0.95211 0.94765 0.96375 1.22105 0.97122 1.01009 0.97176 1.22755 1.01610 0.86135 0.90864 1.87853 1.49690 1.38507 1.55769 1.22572 0.88278 0.96708 0.93178 1.22006 1.01209 0.97611 0.95837 1.21726 0.92610 0.97863 1.01308 1.21863 0.90002 0.92703 1.02970 0.89302 0.87230 0.88973 0.77875 0.82049 0.75209 0.95509 0.96475 0.93977 0.98077 0.92828 0.89598 0.92691 0.91453 0.87065 0.88703 0.92333 0.92461 0.93890 0.89757 0.90499 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 11.04 127.77 1.41 1.75 16 2 N -0.44 -6.64 3.09 -547.88 -1.69 -8.33 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.18 -3.46 10.56 23.62 0.25 -3.21 16 5 C -0.26 -7.08 6.29 -19.04 -0.12 -7.20 16 6 C 0.58 20.28 7.78 86.62 0.67 20.95 16 7 O -0.60 -26.78 16.57 -4.13 -0.07 -26.85 16 8 N -0.71 -21.73 5.08 -445.53 -2.26 -23.99 16 9 C 0.14 5.34 2.27 45.08 0.10 5.44 16 10 H 0.06 2.74 5.71 -2.39 -0.01 2.73 16 11 C 0.15 6.73 6.09 86.37 0.53 7.26 16 12 N -0.60 -31.48 2.50 -699.23 -1.75 -33.23 16 13 C -0.26 -15.28 9.58 84.03 0.81 -14.48 16 14 H 0.05 3.04 7.89 -2.91 -0.02 3.01 16 15 C -0.04 -2.34 4.92 84.86 0.42 -1.93 16 16 N -0.93 -55.72 11.20 21.65 0.24 -55.48 16 17 Si 0.96 47.30 29.59 68.60 2.03 49.33 16 18 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 C 0.19 9.34 3.98 86.32 0.34 9.68 16 22 C -0.07 -2.59 0.51 -52.11 -0.03 -2.61 16 23 C -0.14 -4.08 4.92 30.66 0.15 -3.93 16 24 C 0.06 1.54 6.57 72.02 0.47 2.01 16 25 O -0.40 -12.03 10.76 -148.98 -1.60 -13.64 16 26 C 0.07 2.11 6.57 72.02 0.47 2.59 16 27 C -0.13 -4.90 4.48 30.66 0.14 -4.77 16 28 C -0.10 -3.00 3.63 30.60 0.11 -2.89 16 29 C 0.06 1.41 11.12 83.92 0.93 2.34 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.11 0.12 8.13 -2.39 -0.02 0.10 16 32 H 0.09 0.43 8.13 -2.39 -0.02 0.41 16 33 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.16 2.31 7.70 -2.91 -0.02 2.29 16 35 H 0.41 9.62 7.73 -92.71 -0.72 8.90 16 36 H 0.03 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 41 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.41 6.59 -2.38 -0.02 1.40 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.06 1.65 6.64 -2.39 -0.02 1.63 16 47 H 0.06 2.49 5.92 -2.38 -0.01 2.48 16 48 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 2.17 5.03 -2.39 -0.01 2.16 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -80.05 392.90 2.72 -77.33 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.22 Total: 23.02 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.60 Total: 11.84 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.46 Total: -121.03 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.67 Total: -40.49 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -80.05 2.72 -77.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089936273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds