Wall clock time and date at job start Wed Apr 1 2020 05:37:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36446 * 124.84936 * 2 1
4 4 C 1.34487 * 108.85287 * 179.77052 * 3 2 1
5 5 C 1.46678 * 106.33527 * 0.37907 * 4 3 2
6 6 C 1.47264 * 126.94582 * 179.88835 * 5 4 3
7 7 O 1.21630 * 120.00266 * 179.68416 * 6 5 4
8 8 N 1.34775 * 119.99826 * 359.68262 * 6 5 4
9 9 C 1.46501 * 120.00276 * 180.02562 * 8 6 5
10 10 H 1.08999 * 109.50005 * 325.07415 * 9 8 6
11 11 C 1.53201 * 109.52911 * 85.15919 * 9 8 6
12 12 N 1.46923 * 108.81034 * 174.63371 * 11 9 8
13 13 C 1.36930 * 120.63892 * 126.37542 * 12 11 9
14 14 H 1.08003 * 119.99956 * 331.87110 * 13 12 11
15 15 C 1.38813 * 120.00030 * 151.86052 * 13 12 11
16 16 N 1.31618 * 120.00009 * 343.10377 * 15 13 12
17 17 Si 1.86804 * 119.99823 * 163.10047 * 15 13 12
18 18 H 1.48503 * 109.47280 * 359.97438 * 17 15 13
19 19 H 1.48494 * 109.47350 * 120.00238 * 17 15 13
20 20 H 1.48507 * 109.46693 * 240.00420 * 17 15 13
21 21 C 1.46955 * 118.72766 * 306.38179 * 12 11 9
22 22 C 1.53084 * 108.76891 * 53.47873 * 21 12 11
23 23 C 1.53070 * 109.53458 * 185.32888 * 22 21 12
24 24 C 1.53118 * 109.15978 * 183.24338 * 23 22 21
25 25 O 1.42900 * 109.40669 * 57.47264 * 24 23 22
26 26 C 1.42895 * 114.14243 * 298.83193 * 25 24 23
27 27 C 1.53087 * 109.49258 * 65.60449 * 22 21 12
28 28 C 1.52959 * 109.48732 * 305.49165 * 22 21 12
29 29 C 1.34652 * 124.85008 * 180.02562 * 2 1 3
30 30 H 1.08997 * 109.46867 * 269.96890 * 1 2 3
31 31 H 1.09003 * 109.46980 * 29.97343 * 1 2 3
32 32 H 1.09002 * 109.46800 * 149.97156 * 1 2 3
33 33 H 1.07997 * 125.57256 * 359.97438 * 3 2 1
34 34 H 1.08007 * 126.82918 * 180.25501 * 4 3 2
35 35 H 0.97001 * 119.99925 * 0.02562 * 8 6 5
36 36 H 1.08997 * 109.58005 * 294.43516 * 11 9 8
37 37 H 1.09003 * 109.57681 * 54.83453 * 11 9 8
38 38 H 0.97000 * 119.99648 * 179.97438 * 16 15 13
39 39 H 1.09003 * 109.58429 * 293.69871 * 21 12 11
40 40 H 1.08995 * 109.59077 * 173.26450 * 21 12 11
41 41 H 1.09007 * 109.52787 * 63.33878 * 23 22 21
42 42 H 1.08998 * 109.57799 * 303.18058 * 23 22 21
43 43 H 1.09005 * 109.48047 * 297.49241 * 24 23 22
44 44 H 1.08999 * 109.48251 * 177.45759 * 24 23 22
45 45 H 1.08997 * 109.48396 * 181.15329 * 26 25 24
46 46 H 1.08994 * 109.49112 * 301.20459 * 26 25 24
47 47 H 1.09005 * 109.52032 * 296.70182 * 27 22 21
48 48 H 1.09000 * 109.52434 * 56.89222 * 27 22 21
49 49 H 1.09002 * 109.45948 * 181.26283 * 28 22 21
50 50 H 1.08990 * 109.46101 * 301.23330 * 28 22 21
51 51 H 1.08002 * 125.80459 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2447 1.1198 0.0000
4 6 3.5375 0.7491 0.0051
5 6 3.5462 -0.7176 -0.0008
6 6 4.7284 -1.5957 -0.0007
7 8 4.5885 -2.8040 -0.0002
8 7 5.9653 -1.0606 -0.0010
9 6 7.1415 -1.9341 -0.0014
10 1 6.9315 -2.8273 0.5869
11 6 7.4795 -2.3372 -1.4403
12 7 8.7324 -3.1046 -1.4353
13 6 8.7949 -4.3423 -2.0177
14 1 7.9089 -4.9573 -2.0755
15 6 9.9970 -4.8066 -2.5339
16 7 10.9804 -3.9645 -2.7708
17 14 10.2188 -6.6265 -2.8922
18 1 8.9738 -7.3556 -2.5405
19 1 10.5121 -6.8146 -4.3357
20 1 11.3469 -7.1560 -2.0846
21 6 9.9172 -2.5184 -0.7933
22 6 9.5518 -2.1108 0.6363
23 6 10.7329 -1.3781 1.2774
24 6 10.3887 -1.0461 2.7320
25 8 10.0712 -2.2509 3.4317
26 6 8.9434 -2.9527 2.9050
27 6 9.2296 -3.3619 1.4576
28 6 8.3315 -1.1890 0.6080
29 6 2.2345 -1.1050 -0.0005
30 1 -0.3633 -0.0006 1.0276
31 1 -0.3633 0.8903 -0.5134
32 1 -0.3633 -0.8898 -0.5143
33 1 1.8829 2.1373 -0.0004
34 1 4.3981 1.4018 0.0103
35 1 6.0769 -0.0970 -0.0011
36 1 6.6760 -2.9522 -1.8457
37 1 7.6013 -1.4427 -2.0512
38 1 11.8205 -4.2891 -3.1312
39 1 10.2389 -1.6400 -1.3528
40 1 10.7213 -3.2538 -0.7694
41 1 10.9302 -0.4562 0.7302
42 1 11.6170 -2.0150 1.2485
43 1 9.5312 -0.3737 2.7582
44 1 11.2434 -0.5643 3.2069
45 1 8.7572 -3.8437 3.5046
46 1 8.0668 -2.3056 2.9333
47 1 8.3533 -3.8568 1.0389
48 1 10.0803 -4.0430 1.4329
49 1 8.0853 -0.8811 1.6242
50 1 8.5555 -0.3085 0.0060
51 1 1.8767 -2.1241 -0.0013
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089936273.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:37:44
Heat of formation + Delta-G solvation = -31.641459 kcal
Electronic energy + Delta-G solvation = -32151.898591 eV
Core-core repulsion = 28051.679734 eV
Total energy + Delta-G solvation = -4100.218857 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.11602 -41.49452 -39.99732 -38.30989 -35.87297 -35.08150 -33.74558 -33.01745
-31.99833 -30.82101 -29.95577 -28.67476 -27.37849 -27.29457 -24.58490 -24.55217
-24.14618 -22.83910 -21.73389 -20.95726 -20.72308 -19.44662 -18.73968 -18.51216
-17.53666 -16.88567 -16.79075 -16.49864 -16.41246 -16.31360 -16.02411 -15.63645
-15.42346 -15.16496 -15.10147 -15.02947 -14.75084 -14.43083 -14.20591 -13.88387
-13.80656 -13.26915 -13.20710 -13.09861 -13.03396 -12.98385 -12.90571 -12.74946
-12.67844 -12.33291 -12.16038 -12.08204 -11.91334 -11.81849 -11.59432 -11.13427
-11.01920 -10.79715 -10.59706 -10.25061 -10.08184 -9.47806 -9.25696 -8.65614
-7.90003 -5.34865 0.81527 1.41078 1.43380 1.54263 1.57730 1.94477
2.40226 2.55133 2.65766 3.04204 3.23490 3.62488 3.75313 3.86713
3.96292 4.02458 4.06810 4.12459 4.18497 4.20724 4.26125 4.36042
4.37871 4.41995 4.49070 4.53709 4.58491 4.63814 4.76373 4.76811
4.78533 4.87536 4.91955 4.99225 5.02088 5.05457 5.11702 5.14217
5.25076 5.29377 5.32441 5.45673 5.57051 5.63007 5.65671 5.75554
5.81135 6.10516 6.33670 6.37201 6.39810 6.77494 7.13399 7.44701
7.82698 8.33275 9.15253
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010158 B = 0.003417 C = 0.002798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2755.896144 B = 8193.349255 C =10006.260036
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.061 3.939
2 N -0.444 5.444
3 C -0.008 4.008
4 C -0.183 4.183
5 C -0.263 4.263
6 C 0.582 3.418
7 O -0.603 6.603
8 N -0.705 5.705
9 C 0.144 3.856
10 H 0.064 0.936
11 C 0.145 3.855
12 N -0.599 5.599
13 C -0.260 4.260
14 H 0.050 0.950
15 C -0.040 4.040
16 N -0.927 5.927
17 Si 0.959 3.041
18 H -0.274 1.274
19 H -0.288 1.288
20 H -0.286 1.286
21 C 0.194 3.806
22 C -0.071 4.071
23 C -0.136 4.136
24 C 0.063 3.937
25 O -0.399 6.399
26 C 0.069 3.931
27 C -0.129 4.129
28 C -0.097 4.097
29 C 0.062 3.938
30 H 0.088 0.912
31 H 0.109 0.891
32 H 0.092 0.908
33 H 0.204 0.796
34 H 0.162 0.838
35 H 0.411 0.589
36 H 0.026 0.974
37 H 0.017 0.983
38 H 0.251 0.749
39 H 0.001 0.999
40 H 0.053 0.947
41 H 0.085 0.915
42 H 0.054 0.946
43 H 0.067 0.933
44 H 0.111 0.889
45 H 0.095 0.905
46 H 0.059 0.941
47 H 0.057 0.943
48 H 0.042 0.958
49 H 0.084 0.916
50 H 0.076 0.924
51 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.768 16.331 10.994 25.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.118 5.118
3 C -0.135 4.135
4 C -0.206 4.206
5 C -0.273 4.273
6 C 0.372 3.628
7 O -0.486 6.486
8 N -0.356 5.356
9 C 0.038 3.962
10 H 0.082 0.918
11 C 0.018 3.982
12 N -0.322 5.322
13 C -0.390 4.390
14 H 0.068 0.932
15 C -0.236 4.236
16 N -0.573 5.573
17 Si 0.787 3.213
18 H -0.199 1.199
19 H -0.215 1.215
20 H -0.212 1.212
21 C 0.069 3.931
22 C -0.073 4.073
23 C -0.174 4.174
24 C -0.014 4.014
25 O -0.318 6.318
26 C -0.007 4.007
27 C -0.167 4.167
28 C -0.135 4.135
29 C -0.075 4.075
30 H 0.107 0.893
31 H 0.128 0.872
32 H 0.110 0.890
33 H 0.221 0.779
34 H 0.180 0.820
35 H 0.248 0.752
36 H 0.045 0.955
37 H 0.035 0.965
38 H 0.060 0.940
39 H 0.019 0.981
40 H 0.072 0.928
41 H 0.104 0.896
42 H 0.073 0.927
43 H 0.085 0.915
44 H 0.129 0.871
45 H 0.113 0.887
46 H 0.077 0.923
47 H 0.075 0.925
48 H 0.061 0.939
49 H 0.102 0.898
50 H 0.095 0.905
51 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -16.994 15.429 11.068 25.482
hybrid contribution 0.433 -1.097 -1.207 1.688
sum -16.561 14.332 9.861 24.019
Atomic orbital electron populations
1.22446 0.74289 1.06239 1.04907 1.43920 1.08346 1.05109 1.54428
1.22333 0.89951 0.92560 1.08617 1.22301 0.97946 0.91738 1.08641
1.20371 0.92021 0.94690 1.20262 1.17953 0.83520 0.86846 0.74456
1.90754 1.87242 1.17064 1.53519 1.45661 1.04509 1.10555 1.74846
1.21252 0.84725 0.93355 0.96896 0.91827 1.21211 0.88255 0.93942
0.94762 1.44109 1.06903 1.17082 1.64089 1.19344 0.95788 0.92399
1.31497 0.93189 1.25635 0.97688 1.01439 0.98862 1.70158 1.05277
1.33809 1.48024 0.85342 0.77618 0.81177 0.77176 1.19930 1.21480
1.21208 1.20643 0.89019 0.95223 0.88230 1.20996 0.95211 0.94765
0.96375 1.22105 0.97122 1.01009 0.97176 1.22755 1.01610 0.86135
0.90864 1.87853 1.49690 1.38507 1.55769 1.22572 0.88278 0.96708
0.93178 1.22006 1.01209 0.97611 0.95837 1.21726 0.92610 0.97863
1.01308 1.21863 0.90002 0.92703 1.02970 0.89302 0.87230 0.88973
0.77875 0.82049 0.75209 0.95509 0.96475 0.93977 0.98077 0.92828
0.89598 0.92691 0.91453 0.87065 0.88703 0.92333 0.92461 0.93890
0.89757 0.90499 0.81059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.34 11.04 127.77 1.41 1.75 16
2 N -0.44 -6.64 3.09 -547.88 -1.69 -8.33 16
3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16
4 C -0.18 -3.46 10.56 23.62 0.25 -3.21 16
5 C -0.26 -7.08 6.29 -19.04 -0.12 -7.20 16
6 C 0.58 20.28 7.78 86.62 0.67 20.95 16
7 O -0.60 -26.78 16.57 -4.13 -0.07 -26.85 16
8 N -0.71 -21.73 5.08 -445.53 -2.26 -23.99 16
9 C 0.14 5.34 2.27 45.08 0.10 5.44 16
10 H 0.06 2.74 5.71 -2.39 -0.01 2.73 16
11 C 0.15 6.73 6.09 86.37 0.53 7.26 16
12 N -0.60 -31.48 2.50 -699.23 -1.75 -33.23 16
13 C -0.26 -15.28 9.58 84.03 0.81 -14.48 16
14 H 0.05 3.04 7.89 -2.91 -0.02 3.01 16
15 C -0.04 -2.34 4.92 84.86 0.42 -1.93 16
16 N -0.93 -55.72 11.20 21.65 0.24 -55.48 16
17 Si 0.96 47.30 29.59 68.60 2.03 49.33 16
18 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16
19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16
21 C 0.19 9.34 3.98 86.32 0.34 9.68 16
22 C -0.07 -2.59 0.51 -52.11 -0.03 -2.61 16
23 C -0.14 -4.08 4.92 30.66 0.15 -3.93 16
24 C 0.06 1.54 6.57 72.02 0.47 2.01 16
25 O -0.40 -12.03 10.76 -148.98 -1.60 -13.64 16
26 C 0.07 2.11 6.57 72.02 0.47 2.59 16
27 C -0.13 -4.90 4.48 30.66 0.14 -4.77 16
28 C -0.10 -3.00 3.63 30.60 0.11 -2.89 16
29 C 0.06 1.41 11.12 83.92 0.93 2.34 16
30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16
31 H 0.11 0.12 8.13 -2.39 -0.02 0.10 16
32 H 0.09 0.43 8.13 -2.39 -0.02 0.41 16
33 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16
34 H 0.16 2.31 7.70 -2.91 -0.02 2.29 16
35 H 0.41 9.62 7.73 -92.71 -0.72 8.90 16
36 H 0.03 1.37 7.93 -2.39 -0.02 1.35 16
37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
40 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16
41 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16
42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
43 H 0.07 1.41 6.59 -2.38 -0.02 1.40 16
44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16
45 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16
46 H 0.06 1.65 6.64 -2.39 -0.02 1.63 16
47 H 0.06 2.49 5.92 -2.38 -0.01 2.48 16
48 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
49 H 0.08 2.17 5.03 -2.39 -0.01 2.16 16
50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
51 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16
Total: -1.00 -80.05 392.90 2.72 -77.33
By element:
Atomic # 1 Polarization: 22.80 SS G_CDS: 0.22 Total: 23.02 kcal
Atomic # 6 Polarization: 4.24 SS G_CDS: 7.60 Total: 11.84 kcal
Atomic # 7 Polarization: -115.57 SS G_CDS: -5.46 Total: -121.03 kcal
Atomic # 8 Polarization: -38.82 SS G_CDS: -1.67 Total: -40.49 kcal
Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal
Total: -80.05 2.72 -77.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089936273.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal
(2) G-P(sol) polarization free energy of solvation -80.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds