Wall clock time and date at job start Wed Apr 1 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35429 * 116.99450 * 180.02562 * 3 2 1 5 5 N 1.32234 * 119.80715 * 359.97438 * 4 3 2 6 6 C 1.31875 * 121.80328 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40595 * 180.02562 * 6 5 4 8 8 C 1.38350 * 121.18820 * 0.02631 * 6 5 4 9 9 C 1.38341 * 119.45800 * 359.97438 * 8 6 5 10 10 C 1.39995 * 118.34751 * 359.74981 * 9 8 6 11 11 C 1.47520 * 120.59746 * 180.26531 * 10 9 8 12 12 O 1.21587 * 120.00066 * 180.25524 * 11 10 9 13 13 N 1.34777 * 120.00022 * 0.24881 * 11 10 9 14 14 C 1.46499 * 119.99939 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46930 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.88831 * 51.12071 * 15 14 13 17 17 C 1.54905 * 111.00664 * 287.19627 * 15 14 13 18 18 N 1.47425 * 104.83390 * 204.91637 * 17 15 14 19 19 C 1.36940 * 125.64863 * 204.15009 * 18 17 15 20 20 H 1.07997 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.38818 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99533 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47496 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47329 * 119.99872 * 23 21 19 26 26 H 1.48504 * 109.46946 * 239.99552 * 23 21 19 27 27 C 1.47023 * 108.70249 * 24.13032 * 18 17 15 28 28 C 1.54323 * 107.26862 * 358.93955 * 27 18 17 29 29 H 1.08997 * 110.87167 * 96.24404 * 28 27 18 30 30 C 1.53003 * 110.71672 * 219.44156 * 28 27 18 31 31 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 33 33 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 36 36 H 1.09002 * 109.46953 * 90.00421 * 7 6 5 37 37 H 1.08998 * 109.47048 * 210.00071 * 7 6 5 38 38 H 1.08997 * 109.47063 * 330.00270 * 7 6 5 39 39 H 1.08001 * 120.27688 * 179.97438 * 8 6 5 40 40 H 1.07996 * 120.82288 * 179.97438 * 9 8 6 41 41 H 0.97003 * 120.00056 * 359.97438 * 13 11 10 42 42 H 1.08997 * 109.47390 * 300.00319 * 14 13 11 43 43 H 1.09002 * 109.47180 * 60.00778 * 14 13 11 44 44 H 1.08998 * 110.36968 * 323.75870 * 17 15 14 45 45 H 1.09008 * 110.36811 * 86.07747 * 17 15 14 46 46 H 0.97000 * 119.99320 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.87922 * 239.52026 * 27 18 17 48 48 H 1.09000 * 110.00994 * 118.43083 * 27 18 17 49 49 H 1.09005 * 109.46994 * 173.52472 * 30 28 27 50 50 H 1.08997 * 109.47171 * 293.52215 * 30 28 27 51 51 H 1.08997 * 109.47170 * 53.52653 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4733 -0.0005 6 6 5.4634 0.6004 -0.0015 7 6 6.3265 -0.6350 -0.0020 8 6 6.0625 1.8475 -0.0021 9 6 5.2713 2.9823 -0.0022 10 6 3.8804 2.8230 -0.0070 11 6 2.9899 3.9990 -0.0132 12 8 1.7834 3.8480 -0.0127 13 7 3.5136 5.2409 -0.0193 14 6 2.6292 6.4088 -0.0260 15 6 3.4713 7.6861 -0.0327 16 1 4.2191 7.6544 -0.8250 17 6 4.1334 7.9220 1.3477 18 7 4.3658 9.3764 1.4114 19 6 5.3091 10.0009 2.1829 20 1 5.9621 9.4176 2.8152 21 6 5.4261 11.3838 2.1524 22 7 4.6306 12.0946 1.3815 23 14 6.7133 12.2357 3.2044 24 1 7.4749 11.2196 3.9744 25 1 7.6435 12.9947 2.3305 26 1 6.0445 13.1701 4.1451 27 6 3.4172 10.0452 0.5088 28 6 2.5728 8.9439 -0.1661 29 1 1.6289 8.8012 0.3600 30 6 2.3244 9.2782 -1.6383 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 6.5338 -0.9329 -1.0299 37 1 7.2645 -0.4231 0.5111 38 1 5.8053 -1.4424 0.5122 39 1 7.1390 1.9345 -0.0025 40 1 5.7155 3.9667 -0.0022 41 1 4.4761 5.3613 -0.0192 42 1 2.0008 6.3836 -0.9162 43 1 1.9997 6.3929 0.8637 44 1 3.4631 7.6095 2.1484 45 1 5.0791 7.3836 1.4119 46 1 4.7126 13.0609 1.3600 47 1 3.9613 10.6110 -0.2474 48 1 2.7697 10.7132 1.0768 49 1 1.8276 8.4376 -2.1230 50 1 1.6922 10.1633 -1.7083 51 1 3.2764 9.4716 -2.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093091707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:32 Heat of formation + Delta-G solvation = -23.227001 kcal Electronic energy + Delta-G solvation = -30502.322224 eV Core-core repulsion = 26402.468246 eV Total energy + Delta-G solvation = -4099.853978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16588 -39.28527 -38.38804 -37.89614 -34.64772 -33.56267 -32.86497 -32.46127 -31.16560 -30.72655 -29.46174 -28.05395 -25.97914 -25.15780 -24.09655 -23.47850 -22.59905 -22.49896 -20.69339 -20.01912 -19.29019 -18.59151 -17.68645 -17.01971 -16.73058 -16.56350 -15.58834 -15.26025 -15.03210 -14.76909 -14.57669 -14.42419 -14.27193 -14.03510 -13.76857 -13.39634 -13.21354 -13.06827 -12.89503 -12.86931 -12.67351 -12.52483 -12.50702 -12.18373 -11.79480 -11.70714 -11.66164 -11.38012 -11.20354 -10.92918 -10.81939 -10.77784 -10.28440 -10.17221 -10.12926 -9.97522 -9.94524 -9.86703 -9.63985 -9.48722 -8.95008 -8.64057 -8.60680 -6.82874 -5.71496 -3.04890 0.42427 0.97380 2.76161 2.82445 3.18631 3.38886 3.44307 3.46857 3.61854 3.80902 4.32332 4.48679 4.55473 4.65451 4.79850 4.80127 4.90109 5.01561 5.11781 5.15278 5.16790 5.17971 5.23724 5.34531 5.44792 5.53794 5.55720 5.56837 5.58407 5.64019 5.72223 5.78311 5.88381 5.90203 6.04178 6.08928 6.13659 6.20143 6.30704 6.48186 6.50382 6.58130 6.64179 6.77903 6.95809 7.04464 7.45953 7.57202 7.61616 7.65131 7.84380 8.26015 8.31128 9.22042 9.82389 10.48726 11.40149 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002307 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.959150 B =12136.360958 C =13522.396646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.379 3.621 5 N -0.548 5.548 6 C 0.191 3.809 7 C -0.108 4.108 8 C -0.220 4.220 9 C -0.004 4.004 10 C -0.215 4.215 11 C 0.562 3.438 12 O -0.520 6.520 13 N -0.722 5.722 14 C 0.135 3.865 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.142 3.858 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.184 3.816 28 C -0.110 4.110 29 H 0.068 0.932 30 C -0.134 4.134 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.398 0.602 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.019 0.981 45 H 0.035 0.965 46 H 0.251 0.749 47 H 0.049 0.951 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.053 0.947 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -25.074 -6.245 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.199 3.801 5 N -0.274 5.274 6 C 0.053 3.947 7 C -0.165 4.165 8 C -0.240 4.240 9 C -0.030 4.030 10 C -0.221 4.221 11 C 0.347 3.653 12 O -0.397 6.397 13 N -0.375 5.375 14 C 0.012 3.988 15 C -0.133 4.133 16 H 0.098 0.902 17 C 0.015 3.985 18 N -0.333 5.333 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.059 3.941 28 C -0.130 4.130 29 H 0.086 0.914 30 C -0.192 4.192 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.233 0.767 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.653 -25.571 -6.187 26.361 hybrid contribution 1.627 1.262 0.583 2.140 sum -0.026 -24.309 -5.603 24.946 Atomic orbital electron populations 1.21787 0.92784 1.02502 1.03828 1.22685 0.95239 0.81294 1.02190 1.86548 1.15458 1.29766 1.85481 1.19753 0.84574 0.88306 0.87509 1.67282 1.05999 1.32536 1.21554 1.21174 0.88787 0.95371 0.89378 1.20822 0.98050 0.94136 1.03541 1.21742 1.01687 0.92169 1.08430 1.21691 0.91215 1.00052 0.90032 1.20058 0.94248 0.92489 1.15278 1.17730 0.87738 0.82528 0.77255 1.90822 1.14165 1.85846 1.48844 1.45948 1.10608 1.05476 1.75438 1.21400 0.92422 0.82893 1.02130 1.22679 0.97949 0.92848 0.99799 0.90177 1.21586 0.96675 0.87286 0.92906 1.44476 1.39268 0.99558 1.49972 1.19093 1.09202 0.89677 1.17586 0.90468 1.24808 0.99539 0.96217 0.99986 1.69977 1.39956 1.05211 1.41712 0.86055 0.80741 0.79513 0.79509 1.20550 1.21785 1.21774 1.21216 0.90081 0.90473 0.92341 1.22438 0.98455 0.95801 0.96324 0.91387 1.21695 1.01352 1.00468 0.95662 0.91435 0.91471 0.90489 0.91694 0.91725 0.89796 0.90024 0.90210 0.83831 0.83529 0.76745 0.91542 0.91282 0.96285 0.94707 0.93820 0.93313 0.94049 0.93644 0.92775 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.64 6.03 37.16 0.22 0.86 16 3 O -0.27 -3.81 8.22 -39.75 -0.33 -4.14 16 4 C 0.38 5.11 7.51 -16.61 -0.12 4.98 16 5 N -0.55 -6.34 9.11 -9.21 -0.08 -6.43 16 6 C 0.19 1.73 6.78 -82.53 -0.56 1.17 16 7 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 8 C -0.22 -1.80 9.71 -39.50 -0.38 -2.18 16 9 C 0.00 -0.04 9.64 -38.89 -0.37 -0.42 16 10 C -0.21 -2.77 5.90 -104.69 -0.62 -3.39 16 11 C 0.56 8.45 7.77 -12.48 -0.10 8.35 16 12 O -0.52 -9.62 15.19 -16.48 -0.25 -9.87 16 13 N -0.72 -9.64 5.45 -61.36 -0.33 -9.97 16 14 C 0.13 2.00 5.13 -4.04 -0.02 1.98 16 15 C -0.11 -1.86 2.50 -88.47 -0.22 -2.08 16 16 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 17 C 0.14 2.82 6.65 -2.53 -0.02 2.80 16 18 N -0.61 -15.25 3.39 -170.07 -0.58 -15.83 16 19 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.18 4.38 4.97 -3.06 -0.02 4.37 16 28 C -0.11 -2.00 3.02 -88.78 -0.27 -2.27 16 29 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 30 C -0.13 -2.09 9.16 37.16 0.34 -1.75 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.29 8.07 -51.93 -0.42 -0.12 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.15 1.05 6.52 -52.49 -0.34 0.71 16 41 H 0.40 4.40 6.57 -40.82 -0.27 4.13 16 42 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 44 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 45 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.05 1.28 7.00 -51.93 -0.36 0.92 16 48 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 49 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 LS Contribution 412.81 15.07 6.22 6.22 Total: -1.00 -34.37 412.81 -9.91 -44.28 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.47 Total: 0.64 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.64 Total: 4.49 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.42 Total: -58.59 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.58 Total: -14.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.37 -9.91 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093091707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.055 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds