Wall clock time and date at job start Wed Apr 1 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.35499 * 116.99880 * 179.97438 * 3 2 1 5 5 C 1.39168 * 119.52608 * 179.97438 * 4 3 2 6 6 C 1.37963 * 119.26161 * 179.74069 * 5 4 3 7 7 C 1.40277 * 118.35635 * 0.54779 * 6 5 4 8 8 C 1.47611 * 120.49964 * 179.72948 * 7 6 5 9 9 O 1.21591 * 119.99817 * 359.72531 * 8 7 6 10 10 N 1.34771 * 120.00578 * 179.71810 * 8 7 6 11 11 C 1.46500 * 120.00532 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.63987 * 51.85480 * 13 12 11 15 15 C 1.54328 * 111.00289 * 288.78247 * 13 12 11 16 16 N 1.47025 * 107.26854 * 219.60152 * 15 13 12 17 17 C 1.36932 * 125.64984 * 178.84692 * 16 15 13 18 18 H 1.08001 * 120.00347 * 340.92932 * 17 16 15 19 19 C 1.38813 * 120.00014 * 161.20286 * 17 16 15 20 20 N 1.31612 * 120.00268 * 157.58423 * 19 17 16 21 21 Si 1.86806 * 119.99700 * 337.58437 * 19 17 16 22 22 H 1.48501 * 109.47028 * 84.53972 * 21 19 17 23 23 H 1.48497 * 109.46908 * 204.53650 * 21 19 17 24 24 H 1.48496 * 109.47251 * 324.53436 * 21 19 17 25 25 C 1.47428 * 108.69828 * 358.58118 * 16 15 13 26 26 C 1.54903 * 104.83354 * 24.35935 * 25 16 15 27 27 H 1.09001 * 111.00817 * 81.06027 * 26 25 16 28 28 C 1.52999 * 111.00399 * 204.87680 * 26 25 16 29 29 C 1.39530 * 119.00583 * 359.45065 * 7 6 5 30 30 N 1.31663 * 120.62392 * 0.28206 * 29 7 6 31 31 H 1.08997 * 109.46947 * 300.00190 * 1 2 3 32 32 H 1.09001 * 109.46932 * 60.00389 * 1 2 3 33 33 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47348 * 239.99451 * 2 1 3 35 35 H 1.09004 * 109.46547 * 119.99951 * 2 1 3 36 36 H 1.07990 * 120.36830 * 0.02562 * 5 4 3 37 37 H 1.07995 * 120.81708 * 180.27397 * 6 5 4 38 38 H 0.97001 * 119.99919 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47180 * 60.00093 * 11 10 8 40 40 H 1.09000 * 109.47319 * 300.00637 * 11 10 8 41 41 H 1.08998 * 109.47558 * 59.99819 * 12 11 10 42 42 H 1.09010 * 109.47022 * 299.99917 * 12 11 10 43 43 H 1.09001 * 109.99387 * 100.12117 * 15 13 12 44 44 H 1.09008 * 109.77678 * 338.95799 * 15 13 12 45 45 H 0.97003 * 120.00374 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36175 * 143.19440 * 25 16 15 47 47 H 1.09001 * 110.36791 * 265.40865 * 25 16 15 48 48 H 1.08996 * 109.47229 * 58.54985 * 28 26 25 49 49 H 1.09009 * 109.47420 * 178.54544 * 28 26 25 50 50 H 1.08997 * 109.47040 * 298.54173 * 28 26 25 51 51 H 1.07993 * 119.68715 * 180.29842 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 0.0060 7 6 6.0565 1.8493 0.0007 8 6 7.5268 1.9811 0.0007 9 8 8.0382 3.0842 0.0004 10 7 8.3022 0.8788 0.0012 11 6 9.7614 1.0096 0.0019 12 6 10.3982 -0.3815 0.0018 13 6 11.9221 -0.2449 0.0030 14 1 12.2479 0.4166 0.8058 15 6 12.4327 0.2671 -1.3603 16 7 13.6697 -0.4662 -1.6665 17 6 14.4237 -0.3211 -2.8003 18 1 13.9913 0.1271 -3.6827 19 6 15.7421 -0.7551 -2.8173 20 7 16.3287 -1.0330 -3.9623 21 14 16.6837 -0.9448 -1.2151 22 1 16.3922 -2.2757 -0.6243 23 1 18.1402 -0.8292 -1.4804 24 1 16.2672 0.1196 -0.2672 25 6 13.9672 -1.3790 -0.5477 26 6 12.5979 -1.6358 0.1295 27 1 12.0318 -2.3956 -0.4094 28 6 12.7771 -2.0280 1.5975 29 6 5.4587 0.5886 0.0012 30 7 4.1476 0.4681 0.0011 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.2116 3.6704 -0.0004 37 1 5.6711 3.9796 0.0102 38 1 7.8942 -0.0012 0.0020 39 1 10.0770 1.5540 0.8919 40 1 10.0778 1.5538 -0.8880 41 1 10.0826 -0.9256 -0.8884 42 1 10.0818 -0.9260 0.8916 43 1 12.6397 1.3358 -1.3034 44 1 11.6861 0.0726 -2.1305 45 1 17.2501 -1.3360 -3.9742 46 1 14.3867 -2.3130 -0.9215 47 1 14.6565 -0.9080 0.1531 48 1 13.3073 -1.2341 2.1235 49 1 11.7993 -2.1773 2.0557 50 1 13.3521 -2.9519 1.6591 51 1 6.0772 -0.2967 0.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103059086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:37 Heat of formation + Delta-G solvation = -23.418225 kcal Electronic energy + Delta-G solvation = -29447.726981 eV Core-core repulsion = 25347.864711 eV Total energy + Delta-G solvation = -4099.862270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.28461 -39.83375 -38.59562 -38.12810 -35.48671 -33.40334 -33.00598 -32.66152 -31.68422 -31.08985 -30.37779 -27.43586 -25.90885 -25.03945 -24.73002 -23.88081 -22.69455 -21.90924 -21.06077 -20.36954 -19.51931 -19.09826 -18.00400 -17.48603 -16.83406 -16.82457 -15.89081 -15.75694 -15.34642 -15.13977 -14.97876 -14.61026 -14.49536 -14.41853 -13.98887 -13.65354 -13.43959 -13.24733 -13.15168 -12.99045 -12.94173 -12.88584 -12.71935 -12.39105 -12.08103 -11.89803 -11.57926 -11.45176 -11.32829 -11.25919 -10.95331 -10.87124 -10.55279 -10.46738 -10.45597 -10.12527 -9.98939 -9.90531 -9.74128 -9.40478 -9.30681 -8.98322 -8.64642 -6.99743 -5.91806 -3.21530 0.28170 0.71154 2.45827 2.56536 2.89603 3.36242 3.42219 3.49986 3.52663 3.65609 4.28388 4.37453 4.48077 4.50359 4.55440 4.57484 4.66763 4.73740 4.87803 4.93649 4.94605 5.08545 5.10199 5.14392 5.27132 5.31777 5.33567 5.41822 5.45119 5.52833 5.54058 5.62723 5.74347 5.81018 5.84032 5.85837 5.96742 6.06862 6.10981 6.13470 6.24689 6.29672 6.42402 6.58353 6.68184 6.69220 6.84069 6.84718 7.21310 7.25174 7.76193 7.96436 8.34628 8.87504 9.72462 10.22397 11.24521 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.001685 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.183816 B =16608.776526 C =16856.297787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.303 6.303 4 C 0.343 3.657 5 C -0.197 4.197 6 C 0.018 3.982 7 C -0.225 4.225 8 C 0.565 3.435 9 O -0.535 6.535 10 N -0.724 5.724 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.094 4.094 14 H 0.077 0.923 15 C 0.138 3.862 16 N -0.610 5.610 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.116 3.884 26 C -0.100 4.100 27 H 0.079 0.921 28 C -0.140 4.140 29 C 0.179 3.821 30 N -0.544 5.544 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.398 0.602 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.056 0.944 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.292 1.062 12.583 32.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 O -0.210 6.210 4 C 0.165 3.835 5 C -0.217 4.217 6 C -0.008 4.008 7 C -0.231 4.231 8 C 0.352 3.648 9 O -0.412 6.412 10 N -0.375 5.375 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.013 3.987 16 N -0.336 5.336 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.203 1.203 25 C -0.009 4.009 26 C -0.119 4.119 27 H 0.097 0.903 28 C -0.197 4.197 29 C 0.021 3.979 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.233 0.767 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -30.330 1.193 12.390 32.784 hybrid contribution 0.966 0.004 0.814 1.263 sum -29.364 1.197 13.204 32.218 Atomic orbital electron populations 1.21837 0.92774 1.03127 1.03413 1.22697 0.94952 0.80597 1.02870 1.86221 1.16684 1.31262 1.86790 1.20064 0.84124 0.90008 0.89318 1.21079 0.95615 0.95917 1.09120 1.21558 0.91478 0.99602 0.88157 1.20841 0.94703 0.95227 1.12302 1.17867 0.85752 0.84629 0.76580 1.90814 1.74968 1.25725 1.49724 1.45954 1.07756 1.08534 1.75303 1.21533 0.77529 0.98343 1.03120 1.21783 0.95606 0.95501 1.02642 1.22178 0.92709 0.97410 0.99061 0.90478 1.21444 0.89353 0.95040 0.92870 1.44772 1.26427 1.43069 1.19340 1.18655 0.92210 1.37882 0.88036 0.89104 1.24994 0.96539 0.99838 0.96364 1.69842 1.13531 1.47367 1.24626 0.86975 0.78631 0.78071 0.84998 1.21248 1.23094 1.20296 1.22001 0.94224 0.94539 0.90149 1.22351 0.97807 0.96184 0.95606 0.90294 1.21711 1.00995 1.01319 0.95715 1.22622 0.89300 0.96238 0.89725 1.67335 1.06257 1.32888 1.20264 0.91584 0.91541 0.90087 0.91262 0.91314 0.83272 0.82652 0.76731 0.91183 0.90565 0.90848 0.91358 0.95212 0.94918 0.92773 0.92536 0.95759 0.92783 0.92937 0.92750 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.40 6.02 37.16 0.22 0.62 16 3 O -0.30 -2.53 10.10 -18.19 -0.18 -2.72 16 4 C 0.34 3.07 7.49 -16.96 -0.13 2.94 16 5 C -0.20 -1.54 10.02 -39.34 -0.39 -1.93 16 6 C 0.02 0.15 9.70 -38.92 -0.38 -0.23 16 7 C -0.22 -2.09 5.89 -104.83 -0.62 -2.71 16 8 C 0.57 6.46 7.77 -12.44 -0.10 6.36 16 9 O -0.53 -8.17 16.41 5.29 0.09 -8.08 16 10 N -0.72 -6.83 5.51 -61.33 -0.34 -7.17 16 11 C 0.12 1.32 5.56 -4.04 -0.02 1.29 16 12 C -0.12 -1.26 4.74 -26.73 -0.13 -1.39 16 13 C -0.09 -1.38 2.38 -88.78 -0.21 -1.59 16 14 H 0.08 1.11 8.02 -51.93 -0.42 0.69 16 15 C 0.14 2.67 6.25 -3.06 -0.02 2.65 16 16 N -0.61 -14.78 3.20 -170.07 -0.55 -15.33 16 17 C -0.24 -6.92 10.57 -15.06 -0.16 -7.08 16 18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 19 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 20 N -0.91 -28.37 13.97 55.49 0.78 -27.59 16 21 Si 0.88 22.90 24.27 -169.99 -4.13 18.77 16 22 H -0.29 -7.08 6.49 56.52 0.37 -6.72 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.28 -7.12 6.66 56.52 0.38 -6.74 16 25 C 0.12 2.50 4.16 -2.53 -0.01 2.49 16 26 C -0.10 -1.58 3.09 -88.47 -0.27 -1.86 16 27 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 28 C -0.14 -1.80 9.30 37.16 0.35 -1.45 16 29 C 0.18 1.42 10.71 -17.14 -0.18 1.23 16 30 N -0.54 -4.89 9.18 -12.96 -0.12 -5.01 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.16 1.24 7.73 -52.49 -0.41 0.83 16 38 H 0.40 2.54 6.53 -40.82 -0.27 2.27 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 41 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.62 7.70 -51.92 -0.40 0.22 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.06 1.32 6.64 -51.93 -0.34 0.97 16 47 H 0.02 0.56 5.46 -51.93 -0.28 0.27 16 48 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 49 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.16 0.81 6.41 -52.49 -0.34 0.47 16 LS Contribution 408.32 15.07 6.15 6.15 Total: -1.00 -35.27 408.32 -8.43 -43.70 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.37 Total: -2.36 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.76 Total: -0.37 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.23 Total: -55.10 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.10 Total: -10.80 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.13 Total: 18.77 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.27 -8.43 -43.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103059086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.282 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds