Wall clock time and date at job start Wed Apr 1 2020 05:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42900 * 109.47103 * 2 1
4 4 C 1.35499 * 116.99880 * 179.97438 * 3 2 1
5 5 C 1.39168 * 119.52608 * 179.97438 * 4 3 2
6 6 C 1.37963 * 119.26161 * 179.74069 * 5 4 3
7 7 C 1.40277 * 118.35635 * 0.54779 * 6 5 4
8 8 C 1.47611 * 120.49964 * 179.72948 * 7 6 5
9 9 O 1.21591 * 119.99817 * 359.72531 * 8 7 6
10 10 N 1.34771 * 120.00578 * 179.71810 * 8 7 6
11 11 C 1.46500 * 120.00532 * 180.02562 * 10 8 7
12 12 C 1.52993 * 109.47451 * 180.02562 * 11 10 8
13 13 C 1.53001 * 109.47416 * 180.02562 * 12 11 10
14 14 H 1.09005 * 110.63987 * 51.85480 * 13 12 11
15 15 C 1.54328 * 111.00289 * 288.78247 * 13 12 11
16 16 N 1.47025 * 107.26854 * 219.60152 * 15 13 12
17 17 C 1.36932 * 125.64984 * 178.84692 * 16 15 13
18 18 H 1.08001 * 120.00347 * 340.92932 * 17 16 15
19 19 C 1.38813 * 120.00014 * 161.20286 * 17 16 15
20 20 N 1.31612 * 120.00268 * 157.58423 * 19 17 16
21 21 Si 1.86806 * 119.99700 * 337.58437 * 19 17 16
22 22 H 1.48501 * 109.47028 * 84.53972 * 21 19 17
23 23 H 1.48497 * 109.46908 * 204.53650 * 21 19 17
24 24 H 1.48496 * 109.47251 * 324.53436 * 21 19 17
25 25 C 1.47428 * 108.69828 * 358.58118 * 16 15 13
26 26 C 1.54903 * 104.83354 * 24.35935 * 25 16 15
27 27 H 1.09001 * 111.00817 * 81.06027 * 26 25 16
28 28 C 1.52999 * 111.00399 * 204.87680 * 26 25 16
29 29 C 1.39530 * 119.00583 * 359.45065 * 7 6 5
30 30 N 1.31663 * 120.62392 * 0.28206 * 29 7 6
31 31 H 1.08997 * 109.46947 * 300.00190 * 1 2 3
32 32 H 1.09001 * 109.46932 * 60.00389 * 1 2 3
33 33 H 1.09002 * 109.47080 * 180.02562 * 1 2 3
34 34 H 1.08997 * 109.47348 * 239.99451 * 2 1 3
35 35 H 1.09004 * 109.46547 * 119.99951 * 2 1 3
36 36 H 1.07990 * 120.36830 * 0.02562 * 5 4 3
37 37 H 1.07995 * 120.81708 * 180.27397 * 6 5 4
38 38 H 0.97001 * 119.99919 * 359.97438 * 10 8 7
39 39 H 1.09003 * 109.47180 * 60.00093 * 11 10 8
40 40 H 1.09000 * 109.47319 * 300.00637 * 11 10 8
41 41 H 1.08998 * 109.47558 * 59.99819 * 12 11 10
42 42 H 1.09010 * 109.47022 * 299.99917 * 12 11 10
43 43 H 1.09001 * 109.99387 * 100.12117 * 15 13 12
44 44 H 1.09008 * 109.77678 * 338.95799 * 15 13 12
45 45 H 0.97003 * 120.00374 * 179.97438 * 20 19 17
46 46 H 1.09002 * 110.36175 * 143.19440 * 25 16 15
47 47 H 1.09001 * 110.36791 * 265.40865 * 25 16 15
48 48 H 1.08996 * 109.47229 * 58.54985 * 28 26 25
49 49 H 1.09009 * 109.47420 * 178.54544 * 28 26 25
50 50 H 1.08997 * 109.47040 * 298.54173 * 28 26 25
51 51 H 1.07993 * 119.68715 * 180.29842 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3497 1.5248 0.0005
5 6 3.8710 2.8151 0.0000
6 6 5.2395 2.9896 0.0060
7 6 6.0565 1.8493 0.0007
8 6 7.5268 1.9811 0.0007
9 8 8.0382 3.0842 0.0004
10 7 8.3022 0.8788 0.0012
11 6 9.7614 1.0096 0.0019
12 6 10.3982 -0.3815 0.0018
13 6 11.9221 -0.2449 0.0030
14 1 12.2479 0.4166 0.8058
15 6 12.4327 0.2671 -1.3603
16 7 13.6697 -0.4662 -1.6665
17 6 14.4237 -0.3211 -2.8003
18 1 13.9913 0.1271 -3.6827
19 6 15.7421 -0.7551 -2.8173
20 7 16.3287 -1.0330 -3.9623
21 14 16.6837 -0.9448 -1.2151
22 1 16.3922 -2.2757 -0.6243
23 1 18.1402 -0.8292 -1.4804
24 1 16.2672 0.1196 -0.2672
25 6 13.9672 -1.3790 -0.5477
26 6 12.5979 -1.6358 0.1295
27 1 12.0318 -2.3956 -0.4094
28 6 12.7771 -2.0280 1.5975
29 6 5.4587 0.5886 0.0012
30 7 4.1476 0.4681 0.0011
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 0.0005
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5139 0.8900
36 1 3.2116 3.6704 -0.0004
37 1 5.6711 3.9796 0.0102
38 1 7.8942 -0.0012 0.0020
39 1 10.0770 1.5540 0.8919
40 1 10.0778 1.5538 -0.8880
41 1 10.0826 -0.9256 -0.8884
42 1 10.0818 -0.9260 0.8916
43 1 12.6397 1.3358 -1.3034
44 1 11.6861 0.0726 -2.1305
45 1 17.2501 -1.3360 -3.9742
46 1 14.3867 -2.3130 -0.9215
47 1 14.6565 -0.9080 0.1531
48 1 13.3073 -1.2341 2.1235
49 1 11.7993 -2.1773 2.0557
50 1 13.3521 -2.9519 1.6591
51 1 6.0772 -0.2967 0.0020
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001103059086.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:37
Heat of formation + Delta-G solvation = -23.418225 kcal
Electronic energy + Delta-G solvation = -29447.726981 eV
Core-core repulsion = 25347.864711 eV
Total energy + Delta-G solvation = -4099.862270 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.28461 -39.83375 -38.59562 -38.12810 -35.48671 -33.40334 -33.00598 -32.66152
-31.68422 -31.08985 -30.37779 -27.43586 -25.90885 -25.03945 -24.73002 -23.88081
-22.69455 -21.90924 -21.06077 -20.36954 -19.51931 -19.09826 -18.00400 -17.48603
-16.83406 -16.82457 -15.89081 -15.75694 -15.34642 -15.13977 -14.97876 -14.61026
-14.49536 -14.41853 -13.98887 -13.65354 -13.43959 -13.24733 -13.15168 -12.99045
-12.94173 -12.88584 -12.71935 -12.39105 -12.08103 -11.89803 -11.57926 -11.45176
-11.32829 -11.25919 -10.95331 -10.87124 -10.55279 -10.46738 -10.45597 -10.12527
-9.98939 -9.90531 -9.74128 -9.40478 -9.30681 -8.98322 -8.64642 -6.99743
-5.91806 -3.21530 0.28170 0.71154 2.45827 2.56536 2.89603 3.36242
3.42219 3.49986 3.52663 3.65609 4.28388 4.37453 4.48077 4.50359
4.55440 4.57484 4.66763 4.73740 4.87803 4.93649 4.94605 5.08545
5.10199 5.14392 5.27132 5.31777 5.33567 5.41822 5.45119 5.52833
5.54058 5.62723 5.74347 5.81018 5.84032 5.85837 5.96742 6.06862
6.10981 6.13470 6.24689 6.29672 6.42402 6.58353 6.68184 6.69220
6.84069 6.84718 7.21310 7.25174 7.76193 7.96436 8.34628 8.87504
9.72462 10.22397 11.24521
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021399 B = 0.001685 C = 0.001661
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.183816 B =16608.776526 C =16856.297787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.064 3.936
3 O -0.303 6.303
4 C 0.343 3.657
5 C -0.197 4.197
6 C 0.018 3.982
7 C -0.225 4.225
8 C 0.565 3.435
9 O -0.535 6.535
10 N -0.724 5.724
11 C 0.118 3.882
12 C -0.117 4.117
13 C -0.094 4.094
14 H 0.077 0.923
15 C 0.138 3.862
16 N -0.610 5.610
17 C -0.241 4.241
18 H 0.091 0.909
19 C 0.021 3.979
20 N -0.910 5.910
21 Si 0.883 3.117
22 H -0.285 1.285
23 H -0.303 1.303
24 H -0.277 1.277
25 C 0.116 3.884
26 C -0.100 4.100
27 H 0.079 0.921
28 C -0.140 4.140
29 C 0.179 3.821
30 N -0.544 5.544
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.080 0.920
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.150 0.850
37 H 0.156 0.844
38 H 0.398 0.602
39 H 0.070 0.930
40 H 0.076 0.924
41 H 0.073 0.927
42 H 0.068 0.932
43 H 0.030 0.970
44 H 0.033 0.967
45 H 0.262 0.738
46 H 0.056 0.944
47 H 0.025 0.975
48 H 0.053 0.947
49 H 0.052 0.948
50 H 0.053 0.947
51 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.292 1.062 12.583 32.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.011 4.011
3 O -0.210 6.210
4 C 0.165 3.835
5 C -0.217 4.217
6 C -0.008 4.008
7 C -0.231 4.231
8 C 0.352 3.648
9 O -0.412 6.412
10 N -0.375 5.375
11 C -0.005 4.005
12 C -0.155 4.155
13 C -0.114 4.114
14 H 0.095 0.905
15 C 0.013 3.987
16 N -0.336 5.336
17 C -0.368 4.368
18 H 0.109 0.891
19 C -0.177 4.177
20 N -0.554 5.554
21 Si 0.713 3.287
22 H -0.212 1.212
23 H -0.231 1.231
24 H -0.203 1.203
25 C -0.009 4.009
26 C -0.119 4.119
27 H 0.097 0.903
28 C -0.197 4.197
29 C 0.021 3.979
30 N -0.267 5.267
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.099 0.901
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.167 0.833
37 H 0.173 0.827
38 H 0.233 0.767
39 H 0.088 0.912
40 H 0.094 0.906
41 H 0.092 0.908
42 H 0.086 0.914
43 H 0.048 0.952
44 H 0.051 0.949
45 H 0.072 0.928
46 H 0.075 0.925
47 H 0.042 0.958
48 H 0.072 0.928
49 H 0.071 0.929
50 H 0.072 0.928
51 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -30.330 1.193 12.390 32.784
hybrid contribution 0.966 0.004 0.814 1.263
sum -29.364 1.197 13.204 32.218
Atomic orbital electron populations
1.21837 0.92774 1.03127 1.03413 1.22697 0.94952 0.80597 1.02870
1.86221 1.16684 1.31262 1.86790 1.20064 0.84124 0.90008 0.89318
1.21079 0.95615 0.95917 1.09120 1.21558 0.91478 0.99602 0.88157
1.20841 0.94703 0.95227 1.12302 1.17867 0.85752 0.84629 0.76580
1.90814 1.74968 1.25725 1.49724 1.45954 1.07756 1.08534 1.75303
1.21533 0.77529 0.98343 1.03120 1.21783 0.95606 0.95501 1.02642
1.22178 0.92709 0.97410 0.99061 0.90478 1.21444 0.89353 0.95040
0.92870 1.44772 1.26427 1.43069 1.19340 1.18655 0.92210 1.37882
0.88036 0.89104 1.24994 0.96539 0.99838 0.96364 1.69842 1.13531
1.47367 1.24626 0.86975 0.78631 0.78071 0.84998 1.21248 1.23094
1.20296 1.22001 0.94224 0.94539 0.90149 1.22351 0.97807 0.96184
0.95606 0.90294 1.21711 1.00995 1.01319 0.95715 1.22622 0.89300
0.96238 0.89725 1.67335 1.06257 1.32888 1.20264 0.91584 0.91541
0.90087 0.91262 0.91314 0.83272 0.82652 0.76731 0.91183 0.90565
0.90848 0.91358 0.95212 0.94918 0.92773 0.92536 0.95759 0.92783
0.92937 0.92750 0.81959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16
2 C 0.06 0.40 6.02 37.16 0.22 0.62 16
3 O -0.30 -2.53 10.10 -18.19 -0.18 -2.72 16
4 C 0.34 3.07 7.49 -16.96 -0.13 2.94 16
5 C -0.20 -1.54 10.02 -39.34 -0.39 -1.93 16
6 C 0.02 0.15 9.70 -38.92 -0.38 -0.23 16
7 C -0.22 -2.09 5.89 -104.83 -0.62 -2.71 16
8 C 0.57 6.46 7.77 -12.44 -0.10 6.36 16
9 O -0.53 -8.17 16.41 5.29 0.09 -8.08 16
10 N -0.72 -6.83 5.51 -61.33 -0.34 -7.17 16
11 C 0.12 1.32 5.56 -4.04 -0.02 1.29 16
12 C -0.12 -1.26 4.74 -26.73 -0.13 -1.39 16
13 C -0.09 -1.38 2.38 -88.78 -0.21 -1.59 16
14 H 0.08 1.11 8.02 -51.93 -0.42 0.69 16
15 C 0.14 2.67 6.25 -3.06 -0.02 2.65 16
16 N -0.61 -14.78 3.20 -170.07 -0.55 -15.33 16
17 C -0.24 -6.92 10.57 -15.06 -0.16 -7.08 16
18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16
19 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16
20 N -0.91 -28.37 13.97 55.49 0.78 -27.59 16
21 Si 0.88 22.90 24.27 -169.99 -4.13 18.77 16
22 H -0.29 -7.08 6.49 56.52 0.37 -6.72 16
23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16
24 H -0.28 -7.12 6.66 56.52 0.38 -6.74 16
25 C 0.12 2.50 4.16 -2.53 -0.01 2.49 16
26 C -0.10 -1.58 3.09 -88.47 -0.27 -1.86 16
27 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16
28 C -0.14 -1.80 9.30 37.16 0.35 -1.45 16
29 C 0.18 1.42 10.71 -17.14 -0.18 1.23 16
30 N -0.54 -4.89 9.18 -12.96 -0.12 -5.01 16
31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16
35 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16
36 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16
37 H 0.16 1.24 7.73 -52.49 -0.41 0.83 16
38 H 0.40 2.54 6.53 -40.82 -0.27 2.27 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16
41 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16
42 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16
43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
44 H 0.03 0.62 7.70 -51.92 -0.40 0.22 16
45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16
46 H 0.06 1.32 6.64 -51.93 -0.34 0.97 16
47 H 0.02 0.56 5.46 -51.93 -0.28 0.27 16
48 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16
49 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16
50 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
51 H 0.16 0.81 6.41 -52.49 -0.34 0.47 16
LS Contribution 408.32 15.07 6.15 6.15
Total: -1.00 -35.27 408.32 -8.43 -43.70
By element:
Atomic # 1 Polarization: 6.01 SS G_CDS: -8.37 Total: -2.36 kcal
Atomic # 6 Polarization: 1.40 SS G_CDS: -1.76 Total: -0.37 kcal
Atomic # 7 Polarization: -54.87 SS G_CDS: -0.23 Total: -55.10 kcal
Atomic # 8 Polarization: -10.70 SS G_CDS: -0.10 Total: -10.80 kcal
Atomic # 14 Polarization: 22.90 SS G_CDS: -4.13 Total: 18.77 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -35.27 -8.43 -43.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103059086.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.282 kcal
(2) G-P(sol) polarization free energy of solvation -35.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds