Wall clock time and date at job start Wed Apr 1 2020 05:17:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42900 * 109.47103 * 2 1
4 4 C 1.35499 * 116.99880 * 179.97438 * 3 2 1
5 5 C 1.39168 * 119.52608 * 179.97438 * 4 3 2
6 6 C 1.37963 * 119.26161 * 179.74069 * 5 4 3
7 7 C 1.40277 * 118.35635 * 0.54779 * 6 5 4
8 8 C 1.47611 * 120.49964 * 179.72948 * 7 6 5
9 9 O 1.21591 * 119.99817 * 359.72531 * 8 7 6
10 10 N 1.34771 * 120.00578 * 179.71810 * 8 7 6
11 11 C 1.46500 * 120.00532 * 180.02562 * 10 8 7
12 12 C 1.52993 * 109.47451 * 180.02562 * 11 10 8
13 13 C 1.53001 * 109.47416 * 180.02562 * 12 11 10
14 14 H 1.09005 * 110.63987 * 51.85480 * 13 12 11
15 15 C 1.54328 * 111.00289 * 288.78247 * 13 12 11
16 16 N 1.47025 * 107.26854 * 219.60152 * 15 13 12
17 17 C 1.36932 * 125.64984 * 178.84692 * 16 15 13
18 18 H 1.08001 * 120.00347 * 340.92932 * 17 16 15
19 19 C 1.38813 * 120.00014 * 161.20286 * 17 16 15
20 20 N 1.31612 * 120.00268 * 157.58423 * 19 17 16
21 21 Si 1.86806 * 119.99700 * 337.58437 * 19 17 16
22 22 H 1.48501 * 109.47028 * 84.53972 * 21 19 17
23 23 H 1.48497 * 109.46908 * 204.53650 * 21 19 17
24 24 H 1.48496 * 109.47251 * 324.53436 * 21 19 17
25 25 C 1.47428 * 108.69828 * 358.58118 * 16 15 13
26 26 C 1.54903 * 104.83354 * 24.35935 * 25 16 15
27 27 H 1.09001 * 111.00817 * 81.06027 * 26 25 16
28 28 C 1.52999 * 111.00399 * 204.87680 * 26 25 16
29 29 C 1.39530 * 119.00583 * 359.45065 * 7 6 5
30 30 N 1.31663 * 120.62392 * 0.28206 * 29 7 6
31 31 H 1.08997 * 109.46947 * 300.00190 * 1 2 3
32 32 H 1.09001 * 109.46932 * 60.00389 * 1 2 3
33 33 H 1.09002 * 109.47080 * 180.02562 * 1 2 3
34 34 H 1.08997 * 109.47348 * 239.99451 * 2 1 3
35 35 H 1.09004 * 109.46547 * 119.99951 * 2 1 3
36 36 H 1.07990 * 120.36830 * 0.02562 * 5 4 3
37 37 H 1.07995 * 120.81708 * 180.27397 * 6 5 4
38 38 H 0.97001 * 119.99919 * 359.97438 * 10 8 7
39 39 H 1.09003 * 109.47180 * 60.00093 * 11 10 8
40 40 H 1.09000 * 109.47319 * 300.00637 * 11 10 8
41 41 H 1.08998 * 109.47558 * 59.99819 * 12 11 10
42 42 H 1.09010 * 109.47022 * 299.99917 * 12 11 10
43 43 H 1.09001 * 109.99387 * 100.12117 * 15 13 12
44 44 H 1.09008 * 109.77678 * 338.95799 * 15 13 12
45 45 H 0.97003 * 120.00374 * 179.97438 * 20 19 17
46 46 H 1.09002 * 110.36175 * 143.19440 * 25 16 15
47 47 H 1.09001 * 110.36791 * 265.40865 * 25 16 15
48 48 H 1.08996 * 109.47229 * 58.54985 * 28 26 25
49 49 H 1.09009 * 109.47420 * 178.54544 * 28 26 25
50 50 H 1.08997 * 109.47040 * 298.54173 * 28 26 25
51 51 H 1.07993 * 119.68715 * 180.29842 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3497 1.5248 0.0005
5 6 3.8710 2.8151 0.0000
6 6 5.2395 2.9896 0.0060
7 6 6.0565 1.8493 0.0007
8 6 7.5268 1.9811 0.0007
9 8 8.0382 3.0842 0.0004
10 7 8.3022 0.8788 0.0012
11 6 9.7614 1.0096 0.0019
12 6 10.3982 -0.3815 0.0018
13 6 11.9221 -0.2449 0.0030
14 1 12.2479 0.4166 0.8058
15 6 12.4327 0.2671 -1.3603
16 7 13.6697 -0.4662 -1.6665
17 6 14.4237 -0.3211 -2.8003
18 1 13.9913 0.1271 -3.6827
19 6 15.7421 -0.7551 -2.8173
20 7 16.3287 -1.0330 -3.9623
21 14 16.6837 -0.9448 -1.2151
22 1 16.3922 -2.2757 -0.6243
23 1 18.1402 -0.8292 -1.4804
24 1 16.2672 0.1196 -0.2672
25 6 13.9672 -1.3790 -0.5477
26 6 12.5979 -1.6358 0.1295
27 1 12.0318 -2.3956 -0.4094
28 6 12.7771 -2.0280 1.5975
29 6 5.4587 0.5886 0.0012
30 7 4.1476 0.4681 0.0011
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 0.0005
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5139 0.8900
36 1 3.2116 3.6704 -0.0004
37 1 5.6711 3.9796 0.0102
38 1 7.8942 -0.0012 0.0020
39 1 10.0770 1.5540 0.8919
40 1 10.0778 1.5538 -0.8880
41 1 10.0826 -0.9256 -0.8884
42 1 10.0818 -0.9260 0.8916
43 1 12.6397 1.3358 -1.3034
44 1 11.6861 0.0726 -2.1305
45 1 17.2501 -1.3360 -3.9742
46 1 14.3867 -2.3130 -0.9215
47 1 14.6565 -0.9080 0.1531
48 1 13.3073 -1.2341 2.1235
49 1 11.7993 -2.1773 2.0557
50 1 13.3521 -2.9519 1.6591
51 1 6.0772 -0.2967 0.0020
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103059086.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:35
Heat of formation + Delta-G solvation = -49.284522 kcal
Electronic energy + Delta-G solvation = -29448.848628 eV
Core-core repulsion = 25347.864711 eV
Total energy + Delta-G solvation = -4100.983917 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.94448 -40.67327 -39.93961 -38.84179 -36.56677 -35.08596 -33.65709 -33.41663
-32.96808 -32.52496 -31.12150 -28.80533 -27.49250 -26.07228 -25.32404 -24.91766
-23.45375 -23.07433 -21.94556 -21.84086 -20.78855 -19.70133 -18.92546 -18.79733
-18.11773 -17.38064 -17.12837 -16.87985 -16.65354 -16.31248 -15.94773 -15.49736
-15.26609 -15.23147 -15.01478 -14.89233 -14.60280 -14.50365 -14.37820 -14.19896
-13.87344 -13.70511 -13.38772 -13.32986 -13.28263 -12.96542 -12.89461 -12.72253
-12.50967 -12.46377 -12.28522 -12.10610 -11.74319 -11.72839 -11.46080 -11.42882
-11.26306 -11.11072 -11.10622 -10.78914 -10.69259 -10.18313 -9.63259 -9.03960
-8.19719 -5.45328 -0.39880 0.09625 1.27523 1.36505 1.45592 1.76641
1.90234 2.08976 2.39527 2.73287 3.03290 3.08935 3.35882 3.60450
3.62669 3.76422 3.84947 3.91271 3.93795 3.97289 4.09214 4.19239
4.23463 4.33339 4.39795 4.45800 4.53815 4.59410 4.60153 4.66541
4.72551 4.78684 4.80860 4.86272 4.95079 4.95695 4.99506 5.06356
5.09388 5.15234 5.20190 5.23425 5.27462 5.34902 5.39862 5.45007
5.59492 5.69016 6.09023 6.10043 6.48303 6.60317 6.77414 7.16005
7.54192 8.11737 9.00474
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021399 B = 0.001685 C = 0.001661
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.183816 B =16608.776526 C =16856.297787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.311 6.311
4 C 0.334 3.666
5 C -0.196 4.196
6 C 0.012 3.988
7 C -0.237 4.237
8 C 0.566 3.434
9 O -0.581 6.581
10 N -0.709 5.709
11 C 0.122 3.878
12 C -0.102 4.102
13 C -0.080 4.080
14 H 0.086 0.914
15 C 0.130 3.870
16 N -0.630 5.630
17 C -0.237 4.237
18 H 0.056 0.944
19 C -0.038 4.038
20 N -0.957 5.957
21 Si 0.948 3.052
22 H -0.267 1.267
23 H -0.307 1.307
24 H -0.273 1.273
25 C 0.105 3.895
26 C -0.087 4.087
27 H 0.088 0.912
28 C -0.135 4.135
29 C 0.187 3.813
30 N -0.554 5.554
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.098 0.902
34 H 0.067 0.933
35 H 0.069 0.931
36 H 0.168 0.832
37 H 0.156 0.844
38 H 0.416 0.584
39 H 0.067 0.933
40 H 0.050 0.950
41 H 0.078 0.922
42 H 0.105 0.895
43 H 0.018 0.982
44 H 0.033 0.967
45 H 0.262 0.738
46 H 0.034 0.966
47 H 0.019 0.981
48 H 0.052 0.948
49 H 0.088 0.912
50 H 0.055 0.945
51 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.656 -0.475 15.542 36.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.015 4.015
3 O -0.218 6.218
4 C 0.155 3.845
5 C -0.216 4.216
6 C -0.013 4.013
7 C -0.243 4.243
8 C 0.353 3.647
9 O -0.462 6.462
10 N -0.361 5.361
11 C -0.002 4.002
12 C -0.140 4.140
13 C -0.100 4.100
14 H 0.104 0.896
15 C 0.006 3.994
16 N -0.356 5.356
17 C -0.366 4.366
18 H 0.073 0.927
19 C -0.232 4.232
20 N -0.604 5.604
21 Si 0.776 3.224
22 H -0.192 1.192
23 H -0.236 1.236
24 H -0.199 1.199
25 C -0.019 4.019
26 C -0.106 4.106
27 H 0.106 0.894
28 C -0.193 4.193
29 C 0.029 3.971
30 N -0.278 5.278
31 H 0.085 0.915
32 H 0.084 0.916
33 H 0.117 0.883
34 H 0.085 0.915
35 H 0.087 0.913
36 H 0.185 0.815
37 H 0.174 0.826
38 H 0.254 0.746
39 H 0.086 0.914
40 H 0.068 0.932
41 H 0.097 0.903
42 H 0.124 0.876
43 H 0.036 0.964
44 H 0.051 0.949
45 H 0.071 0.929
46 H 0.052 0.948
47 H 0.037 0.963
48 H 0.071 0.929
49 H 0.107 0.893
50 H 0.074 0.926
51 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -32.752 -0.384 15.387 36.188
hybrid contribution 1.584 0.511 -0.199 1.677
sum -31.168 0.128 15.188 34.671
Atomic orbital electron populations
1.21850 0.91185 1.04280 1.03375 1.22874 0.96209 0.79711 1.02737
1.86223 1.16437 1.32516 1.86588 1.20324 0.84484 0.90451 0.89192
1.21244 0.95481 0.96342 1.08521 1.21669 0.91895 0.99704 0.88075
1.20741 0.93424 0.96204 1.13889 1.18164 0.86614 0.84238 0.75652
1.90793 1.75872 1.27504 1.52068 1.45759 1.06966 1.09092 1.74264
1.21360 0.78512 0.98470 1.01837 1.21664 0.92253 0.95374 1.04723
1.22113 0.95338 0.96602 0.95926 0.89617 1.21670 0.87488 0.94201
0.96037 1.44925 1.27108 1.44716 1.18856 1.18615 0.92782 1.36314
0.88864 0.92656 1.25640 0.97494 1.00617 0.99466 1.69969 1.13828
1.49703 1.26879 0.85921 0.76566 0.78916 0.80947 1.19233 1.23582
1.19875 1.22168 0.97760 0.92691 0.89319 1.22314 0.94020 0.96891
0.97398 0.89359 1.21709 1.03213 1.01265 0.93092 1.23021 0.89205
0.96619 0.88276 1.67401 1.06598 1.33009 1.20751 0.91517 0.91648
0.88336 0.91498 0.91289 0.81466 0.82630 0.74619 0.91436 0.93186
0.90334 0.87624 0.96395 0.94924 0.92886 0.94762 0.96325 0.92888
0.89307 0.92571 0.79007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.98 10.28 71.98 0.74 -0.24 16
2 C 0.06 0.65 6.02 71.98 0.43 1.09 16
3 O -0.31 -4.80 10.10 -88.01 -0.89 -5.69 16
4 C 0.33 5.50 7.49 84.83 0.64 6.13 16
5 C -0.20 -2.82 10.02 22.43 0.22 -2.60 16
6 C 0.01 0.20 9.70 22.70 0.22 0.42 16
7 C -0.24 -4.06 5.89 -20.00 -0.12 -4.18 16
8 C 0.57 12.25 7.77 86.72 0.67 12.92 16
9 O -0.58 -17.79 16.41 -4.00 -0.07 -17.85 16
10 N -0.71 -11.58 5.51 -466.20 -2.57 -14.15 16
11 C 0.12 2.46 5.56 86.38 0.48 2.94 16
12 C -0.10 -1.79 4.74 30.59 0.14 -1.65 16
13 C -0.08 -2.13 2.38 -9.60 -0.02 -2.15 16
14 H 0.09 2.18 8.02 -2.38 -0.02 2.16 16
15 C 0.13 5.00 6.25 86.73 0.54 5.55 16
16 N -0.63 -30.74 3.20 -691.96 -2.22 -32.96 16
17 C -0.24 -14.12 10.57 84.03 0.89 -13.23 16
18 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16
19 C -0.04 -2.29 5.43 84.86 0.46 -1.83 16
20 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16
21 Si 0.95 48.20 24.27 68.60 1.66 49.86 16
22 H -0.27 -12.61 6.49 99.48 0.65 -11.96 16
23 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16
24 H -0.27 -13.54 6.66 99.48 0.66 -12.87 16
25 C 0.11 4.39 4.16 86.85 0.36 4.75 16
26 C -0.09 -2.46 3.09 -9.40 -0.03 -2.49 16
27 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16
28 C -0.14 -2.84 9.30 71.98 0.67 -2.17 16
29 C 0.19 2.51 10.71 85.03 0.91 3.42 16
30 N -0.55 -8.89 9.18 -307.81 -2.82 -11.71 16
31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16
32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16
34 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16
35 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16
36 H 0.17 1.67 8.06 -2.92 -0.02 1.65 16
37 H 0.16 2.48 7.73 -2.91 -0.02 2.46 16
38 H 0.42 3.69 6.53 -92.71 -0.60 3.08 16
39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
40 H 0.05 1.29 7.69 -2.39 -0.02 1.27 16
41 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16
42 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16
43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.03 1.24 7.70 -2.38 -0.02 1.22 16
45 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16
46 H 0.03 1.56 6.64 -2.39 -0.02 1.55 16
47 H 0.02 0.82 5.46 -2.39 -0.01 0.81 16
48 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16
49 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16
50 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
51 H 0.19 1.19 6.41 -2.91 -0.02 1.17 16
Total: -1.00 -80.67 408.32 0.83 -79.84
By element:
Atomic # 1 Polarization: 7.29 SS G_CDS: 0.21 Total: 7.50 kcal
Atomic # 6 Polarization: -0.53 SS G_CDS: 7.22 Total: 6.69 kcal
Atomic # 7 Polarization: -113.04 SS G_CDS: -7.31 Total: -120.35 kcal
Atomic # 8 Polarization: -22.59 SS G_CDS: -0.95 Total: -23.54 kcal
Atomic # 14 Polarization: 48.20 SS G_CDS: 1.66 Total: 49.86 kcal
Total: -80.67 0.83 -79.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103059086.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal
(2) G-P(sol) polarization free energy of solvation -80.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds