Wall clock time and date at job start Wed Apr 1 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.35499 * 116.99880 * 179.97438 * 3 2 1 5 5 C 1.39168 * 119.52608 * 179.97438 * 4 3 2 6 6 C 1.37963 * 119.26161 * 179.74069 * 5 4 3 7 7 C 1.40277 * 118.35635 * 0.54779 * 6 5 4 8 8 C 1.47611 * 120.49964 * 179.72948 * 7 6 5 9 9 O 1.21591 * 119.99817 * 359.72531 * 8 7 6 10 10 N 1.34771 * 120.00578 * 179.71810 * 8 7 6 11 11 C 1.46500 * 120.00532 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.63987 * 51.85480 * 13 12 11 15 15 C 1.54328 * 111.00289 * 288.78247 * 13 12 11 16 16 N 1.47025 * 107.26854 * 219.60152 * 15 13 12 17 17 C 1.36932 * 125.64984 * 178.84692 * 16 15 13 18 18 H 1.08001 * 120.00347 * 340.92932 * 17 16 15 19 19 C 1.38813 * 120.00014 * 161.20286 * 17 16 15 20 20 N 1.31612 * 120.00268 * 157.58423 * 19 17 16 21 21 Si 1.86806 * 119.99700 * 337.58437 * 19 17 16 22 22 H 1.48501 * 109.47028 * 84.53972 * 21 19 17 23 23 H 1.48497 * 109.46908 * 204.53650 * 21 19 17 24 24 H 1.48496 * 109.47251 * 324.53436 * 21 19 17 25 25 C 1.47428 * 108.69828 * 358.58118 * 16 15 13 26 26 C 1.54903 * 104.83354 * 24.35935 * 25 16 15 27 27 H 1.09001 * 111.00817 * 81.06027 * 26 25 16 28 28 C 1.52999 * 111.00399 * 204.87680 * 26 25 16 29 29 C 1.39530 * 119.00583 * 359.45065 * 7 6 5 30 30 N 1.31663 * 120.62392 * 0.28206 * 29 7 6 31 31 H 1.08997 * 109.46947 * 300.00190 * 1 2 3 32 32 H 1.09001 * 109.46932 * 60.00389 * 1 2 3 33 33 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47348 * 239.99451 * 2 1 3 35 35 H 1.09004 * 109.46547 * 119.99951 * 2 1 3 36 36 H 1.07990 * 120.36830 * 0.02562 * 5 4 3 37 37 H 1.07995 * 120.81708 * 180.27397 * 6 5 4 38 38 H 0.97001 * 119.99919 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47180 * 60.00093 * 11 10 8 40 40 H 1.09000 * 109.47319 * 300.00637 * 11 10 8 41 41 H 1.08998 * 109.47558 * 59.99819 * 12 11 10 42 42 H 1.09010 * 109.47022 * 299.99917 * 12 11 10 43 43 H 1.09001 * 109.99387 * 100.12117 * 15 13 12 44 44 H 1.09008 * 109.77678 * 338.95799 * 15 13 12 45 45 H 0.97003 * 120.00374 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36175 * 143.19440 * 25 16 15 47 47 H 1.09001 * 110.36791 * 265.40865 * 25 16 15 48 48 H 1.08996 * 109.47229 * 58.54985 * 28 26 25 49 49 H 1.09009 * 109.47420 * 178.54544 * 28 26 25 50 50 H 1.08997 * 109.47040 * 298.54173 * 28 26 25 51 51 H 1.07993 * 119.68715 * 180.29842 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 0.0060 7 6 6.0565 1.8493 0.0007 8 6 7.5268 1.9811 0.0007 9 8 8.0382 3.0842 0.0004 10 7 8.3022 0.8788 0.0012 11 6 9.7614 1.0096 0.0019 12 6 10.3982 -0.3815 0.0018 13 6 11.9221 -0.2449 0.0030 14 1 12.2479 0.4166 0.8058 15 6 12.4327 0.2671 -1.3603 16 7 13.6697 -0.4662 -1.6665 17 6 14.4237 -0.3211 -2.8003 18 1 13.9913 0.1271 -3.6827 19 6 15.7421 -0.7551 -2.8173 20 7 16.3287 -1.0330 -3.9623 21 14 16.6837 -0.9448 -1.2151 22 1 16.3922 -2.2757 -0.6243 23 1 18.1402 -0.8292 -1.4804 24 1 16.2672 0.1196 -0.2672 25 6 13.9672 -1.3790 -0.5477 26 6 12.5979 -1.6358 0.1295 27 1 12.0318 -2.3956 -0.4094 28 6 12.7771 -2.0280 1.5975 29 6 5.4587 0.5886 0.0012 30 7 4.1476 0.4681 0.0011 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.2116 3.6704 -0.0004 37 1 5.6711 3.9796 0.0102 38 1 7.8942 -0.0012 0.0020 39 1 10.0770 1.5540 0.8919 40 1 10.0778 1.5538 -0.8880 41 1 10.0826 -0.9256 -0.8884 42 1 10.0818 -0.9260 0.8916 43 1 12.6397 1.3358 -1.3034 44 1 11.6861 0.0726 -2.1305 45 1 17.2501 -1.3360 -3.9742 46 1 14.3867 -2.3130 -0.9215 47 1 14.6565 -0.9080 0.1531 48 1 13.3073 -1.2341 2.1235 49 1 11.7993 -2.1773 2.0557 50 1 13.3521 -2.9519 1.6591 51 1 6.0772 -0.2967 0.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103059086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:35 Heat of formation + Delta-G solvation = -49.284522 kcal Electronic energy + Delta-G solvation = -29448.848628 eV Core-core repulsion = 25347.864711 eV Total energy + Delta-G solvation = -4100.983917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94448 -40.67327 -39.93961 -38.84179 -36.56677 -35.08596 -33.65709 -33.41663 -32.96808 -32.52496 -31.12150 -28.80533 -27.49250 -26.07228 -25.32404 -24.91766 -23.45375 -23.07433 -21.94556 -21.84086 -20.78855 -19.70133 -18.92546 -18.79733 -18.11773 -17.38064 -17.12837 -16.87985 -16.65354 -16.31248 -15.94773 -15.49736 -15.26609 -15.23147 -15.01478 -14.89233 -14.60280 -14.50365 -14.37820 -14.19896 -13.87344 -13.70511 -13.38772 -13.32986 -13.28263 -12.96542 -12.89461 -12.72253 -12.50967 -12.46377 -12.28522 -12.10610 -11.74319 -11.72839 -11.46080 -11.42882 -11.26306 -11.11072 -11.10622 -10.78914 -10.69259 -10.18313 -9.63259 -9.03960 -8.19719 -5.45328 -0.39880 0.09625 1.27523 1.36505 1.45592 1.76641 1.90234 2.08976 2.39527 2.73287 3.03290 3.08935 3.35882 3.60450 3.62669 3.76422 3.84947 3.91271 3.93795 3.97289 4.09214 4.19239 4.23463 4.33339 4.39795 4.45800 4.53815 4.59410 4.60153 4.66541 4.72551 4.78684 4.80860 4.86272 4.95079 4.95695 4.99506 5.06356 5.09388 5.15234 5.20190 5.23425 5.27462 5.34902 5.39862 5.45007 5.59492 5.69016 6.09023 6.10043 6.48303 6.60317 6.77414 7.16005 7.54192 8.11737 9.00474 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.001685 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.183816 B =16608.776526 C =16856.297787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.311 6.311 4 C 0.334 3.666 5 C -0.196 4.196 6 C 0.012 3.988 7 C -0.237 4.237 8 C 0.566 3.434 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.122 3.878 12 C -0.102 4.102 13 C -0.080 4.080 14 H 0.086 0.914 15 C 0.130 3.870 16 N -0.630 5.630 17 C -0.237 4.237 18 H 0.056 0.944 19 C -0.038 4.038 20 N -0.957 5.957 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.307 1.307 24 H -0.273 1.273 25 C 0.105 3.895 26 C -0.087 4.087 27 H 0.088 0.912 28 C -0.135 4.135 29 C 0.187 3.813 30 N -0.554 5.554 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.018 0.982 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.034 0.966 47 H 0.019 0.981 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.055 0.945 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.656 -0.475 15.542 36.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.218 6.218 4 C 0.155 3.845 5 C -0.216 4.216 6 C -0.013 4.013 7 C -0.243 4.243 8 C 0.353 3.647 9 O -0.462 6.462 10 N -0.361 5.361 11 C -0.002 4.002 12 C -0.140 4.140 13 C -0.100 4.100 14 H 0.104 0.896 15 C 0.006 3.994 16 N -0.356 5.356 17 C -0.366 4.366 18 H 0.073 0.927 19 C -0.232 4.232 20 N -0.604 5.604 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.236 1.236 24 H -0.199 1.199 25 C -0.019 4.019 26 C -0.106 4.106 27 H 0.106 0.894 28 C -0.193 4.193 29 C 0.029 3.971 30 N -0.278 5.278 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -32.752 -0.384 15.387 36.188 hybrid contribution 1.584 0.511 -0.199 1.677 sum -31.168 0.128 15.188 34.671 Atomic orbital electron populations 1.21850 0.91185 1.04280 1.03375 1.22874 0.96209 0.79711 1.02737 1.86223 1.16437 1.32516 1.86588 1.20324 0.84484 0.90451 0.89192 1.21244 0.95481 0.96342 1.08521 1.21669 0.91895 0.99704 0.88075 1.20741 0.93424 0.96204 1.13889 1.18164 0.86614 0.84238 0.75652 1.90793 1.75872 1.27504 1.52068 1.45759 1.06966 1.09092 1.74264 1.21360 0.78512 0.98470 1.01837 1.21664 0.92253 0.95374 1.04723 1.22113 0.95338 0.96602 0.95926 0.89617 1.21670 0.87488 0.94201 0.96037 1.44925 1.27108 1.44716 1.18856 1.18615 0.92782 1.36314 0.88864 0.92656 1.25640 0.97494 1.00617 0.99466 1.69969 1.13828 1.49703 1.26879 0.85921 0.76566 0.78916 0.80947 1.19233 1.23582 1.19875 1.22168 0.97760 0.92691 0.89319 1.22314 0.94020 0.96891 0.97398 0.89359 1.21709 1.03213 1.01265 0.93092 1.23021 0.89205 0.96619 0.88276 1.67401 1.06598 1.33009 1.20751 0.91517 0.91648 0.88336 0.91498 0.91289 0.81466 0.82630 0.74619 0.91436 0.93186 0.90334 0.87624 0.96395 0.94924 0.92886 0.94762 0.96325 0.92888 0.89307 0.92571 0.79007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 71.98 0.74 -0.24 16 2 C 0.06 0.65 6.02 71.98 0.43 1.09 16 3 O -0.31 -4.80 10.10 -88.01 -0.89 -5.69 16 4 C 0.33 5.50 7.49 84.83 0.64 6.13 16 5 C -0.20 -2.82 10.02 22.43 0.22 -2.60 16 6 C 0.01 0.20 9.70 22.70 0.22 0.42 16 7 C -0.24 -4.06 5.89 -20.00 -0.12 -4.18 16 8 C 0.57 12.25 7.77 86.72 0.67 12.92 16 9 O -0.58 -17.79 16.41 -4.00 -0.07 -17.85 16 10 N -0.71 -11.58 5.51 -466.20 -2.57 -14.15 16 11 C 0.12 2.46 5.56 86.38 0.48 2.94 16 12 C -0.10 -1.79 4.74 30.59 0.14 -1.65 16 13 C -0.08 -2.13 2.38 -9.60 -0.02 -2.15 16 14 H 0.09 2.18 8.02 -2.38 -0.02 2.16 16 15 C 0.13 5.00 6.25 86.73 0.54 5.55 16 16 N -0.63 -30.74 3.20 -691.96 -2.22 -32.96 16 17 C -0.24 -14.12 10.57 84.03 0.89 -13.23 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 19 C -0.04 -2.29 5.43 84.86 0.46 -1.83 16 20 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16 21 Si 0.95 48.20 24.27 68.60 1.66 49.86 16 22 H -0.27 -12.61 6.49 99.48 0.65 -11.96 16 23 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 24 H -0.27 -13.54 6.66 99.48 0.66 -12.87 16 25 C 0.11 4.39 4.16 86.85 0.36 4.75 16 26 C -0.09 -2.46 3.09 -9.40 -0.03 -2.49 16 27 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16 28 C -0.14 -2.84 9.30 71.98 0.67 -2.17 16 29 C 0.19 2.51 10.71 85.03 0.91 3.42 16 30 N -0.55 -8.89 9.18 -307.81 -2.82 -11.71 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16 36 H 0.17 1.67 8.06 -2.92 -0.02 1.65 16 37 H 0.16 2.48 7.73 -2.91 -0.02 2.46 16 38 H 0.42 3.69 6.53 -92.71 -0.60 3.08 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.29 7.69 -2.39 -0.02 1.27 16 41 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16 42 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.03 1.24 7.70 -2.38 -0.02 1.22 16 45 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 46 H 0.03 1.56 6.64 -2.39 -0.02 1.55 16 47 H 0.02 0.82 5.46 -2.39 -0.01 0.81 16 48 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 49 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.19 1.19 6.41 -2.91 -0.02 1.17 16 Total: -1.00 -80.67 408.32 0.83 -79.84 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.21 Total: 7.50 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 7.22 Total: 6.69 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -7.31 Total: -120.35 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.95 Total: -23.54 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.66 Total: 49.86 kcal Total: -80.67 0.83 -79.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103059086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -80.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds