Wall clock time and date at job start Wed Apr 1 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47155 * 2 1 4 4 C 1.35426 * 116.99766 * 179.97438 * 3 2 1 5 5 N 1.32240 * 119.79921 * 359.97438 * 4 3 2 6 6 C 1.31886 * 121.79658 * 180.02562 * 5 4 3 7 7 C 1.38354 * 121.18977 * 359.97438 * 6 5 4 8 8 C 1.38338 * 119.45550 * 359.74341 * 7 6 5 9 9 C 1.39994 * 118.35057 * 0.49799 * 8 7 6 10 10 C 1.47520 * 120.59596 * 179.78345 * 9 8 7 11 11 O 1.21597 * 119.99880 * 179.72502 * 10 9 8 12 12 N 1.34771 * 120.00526 * 359.71720 * 10 9 8 13 13 C 1.46493 * 120.00397 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47582 * 176.55219 * 13 12 10 15 15 N 1.46499 * 109.47071 * 54.62824 * 14 13 12 16 16 C 1.36932 * 119.99918 * 62.78146 * 15 14 13 17 17 H 1.08002 * 120.00278 * 354.56959 * 16 15 14 18 18 C 1.38811 * 120.00261 * 174.57236 * 16 15 14 19 19 N 1.31627 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00155 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47109 * 0.02562 * 20 18 16 22 22 H 1.48512 * 109.46848 * 120.00471 * 20 18 16 23 23 H 1.48503 * 109.47384 * 240.00014 * 20 18 16 24 24 C 1.52997 * 109.47568 * 174.63242 * 14 13 12 25 25 C 1.53004 * 109.47214 * 179.97438 * 24 14 13 26 26 C 1.52992 * 109.47082 * 300.00224 * 25 24 14 27 27 C 1.53004 * 109.47723 * 59.99858 * 26 25 24 28 28 C 1.52995 * 109.46764 * 300.00154 * 27 26 25 29 29 H 1.08998 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47174 * 300.00497 * 1 2 3 31 31 H 1.09006 * 109.46945 * 59.99905 * 1 2 3 32 32 H 1.09001 * 109.47174 * 239.99503 * 2 1 3 33 33 H 1.09006 * 109.46945 * 120.00095 * 2 1 3 34 34 H 1.08003 * 119.40495 * 179.97438 * 6 5 4 35 35 H 1.08002 * 120.26986 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.82566 * 180.25735 * 8 7 6 37 37 H 0.97003 * 119.99872 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47856 * 56.54493 * 13 12 10 39 39 H 1.09008 * 109.46971 * 296.54933 * 13 12 10 40 40 H 0.97004 * 119.99925 * 243.05244 * 15 14 13 41 41 H 0.97005 * 119.99594 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46990 * 299.99795 * 24 14 13 43 43 H 1.09002 * 109.47002 * 59.99726 * 24 14 13 44 44 H 1.08998 * 109.47107 * 179.97438 * 25 24 14 45 45 H 1.09002 * 109.47044 * 60.00139 * 25 24 14 46 46 H 1.09003 * 109.47189 * 299.99325 * 26 25 24 47 47 H 1.09003 * 109.47013 * 179.97438 * 26 25 24 48 48 H 1.08990 * 109.47266 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.46813 * 59.99833 * 27 26 25 50 50 H 1.09002 * 109.47193 * 299.99446 * 28 27 26 51 51 H 1.08998 * 109.46913 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4731 0.0015 6 6 5.4635 0.6001 0.0026 7 6 6.0626 1.8472 0.0022 8 6 5.2715 2.9820 -0.0048 9 6 3.8806 2.8228 -0.0005 10 6 2.9902 3.9990 -0.0027 11 8 1.7836 3.8481 -0.0040 12 7 3.5139 5.2407 -0.0032 13 6 2.6297 6.4087 -0.0049 14 6 3.4697 7.6846 0.0816 15 7 4.4599 7.6915 -0.9980 16 6 4.0487 7.7111 -2.3040 17 1 2.9978 7.6330 -2.5406 18 6 4.9826 7.8313 -3.3240 19 7 6.2634 7.9259 -3.0357 20 14 4.4217 7.8574 -5.1056 21 1 2.9427 7.7362 -5.1608 22 1 4.8372 9.1360 -5.7366 23 1 5.0395 6.7214 -5.8358 24 6 2.5580 8.9057 -0.0547 25 6 3.3980 10.1816 0.0325 26 6 4.1152 10.2287 1.3831 27 6 5.0269 9.0076 1.5195 28 6 4.1869 7.7318 1.4323 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.0820 -0.2853 0.0038 35 1 7.1392 1.9340 0.0026 36 1 5.7158 3.9664 -0.0094 37 1 4.4765 5.3612 -0.0025 38 1 1.9579 6.3572 0.8519 39 1 2.0449 6.4204 -0.9248 40 1 5.4068 7.6781 -0.7878 41 1 6.9160 8.0096 -3.7486 42 1 2.0468 8.8719 -1.0168 43 1 1.8213 8.9006 0.7486 44 1 2.7486 11.0515 -0.0651 45 1 4.1350 10.1869 -0.7706 46 1 3.3782 10.2235 2.1862 47 1 4.7139 11.1374 1.4450 48 1 5.5381 9.0415 2.4815 49 1 5.7639 9.0129 0.7164 50 1 3.4499 7.7264 2.2354 51 1 4.8364 6.8619 1.5290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120084253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:53 Heat of formation + Delta-G solvation = -58.536734 kcal Electronic energy + Delta-G solvation = -31900.840537 eV Core-core repulsion = 27799.455414 eV Total energy + Delta-G solvation = -4101.385123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93361 -40.68999 -39.55493 -39.01604 -35.88010 -35.09083 -33.83713 -32.99274 -32.61790 -31.54694 -31.07370 -30.16814 -27.04929 -25.71322 -25.55529 -24.56908 -23.42775 -23.26537 -21.92587 -21.40891 -19.89313 -19.63271 -19.06096 -18.54202 -17.97029 -17.37630 -16.84503 -16.44420 -16.16103 -16.11243 -15.83680 -15.60057 -15.43828 -15.01136 -14.92685 -14.88789 -14.70842 -14.29940 -14.04796 -13.55711 -13.51678 -13.39752 -13.33058 -13.30593 -13.23209 -12.90582 -12.84109 -12.59419 -12.49395 -12.46836 -12.03126 -11.87234 -11.74942 -11.67203 -11.31099 -11.19205 -11.06903 -11.02884 -10.78998 -10.69723 -10.55605 -9.94835 -9.50839 -8.89912 -7.87473 -5.11116 -0.33205 0.22345 1.42376 1.47135 1.52308 1.91588 1.99892 2.27623 2.58643 2.81970 3.26713 3.45529 3.77197 3.77304 3.82373 3.93203 3.98563 4.02792 4.04767 4.13189 4.15190 4.24253 4.39052 4.40880 4.47735 4.51700 4.68476 4.76241 4.78121 4.80127 4.82514 4.87736 4.90399 4.92609 4.97707 5.07938 5.10215 5.17557 5.19660 5.23503 5.41950 5.46283 5.50411 5.52415 5.58696 5.62930 5.70192 5.82515 6.24586 6.36063 6.61300 6.75303 7.30583 7.45379 8.16767 8.44335 9.34830 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.003494 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.579457 B = 8011.512679 C = 8799.425834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 O -0.300 6.300 4 C 0.351 3.649 5 N -0.556 5.556 6 C 0.165 3.835 7 C -0.207 4.207 8 C -0.008 4.008 9 C -0.234 4.234 10 C 0.553 3.447 11 O -0.572 6.572 12 N -0.692 5.692 13 C 0.123 3.877 14 C 0.191 3.809 15 N -0.708 5.708 16 C -0.205 4.205 17 H 0.059 0.941 18 C -0.058 4.058 19 N -0.956 5.956 20 Si 0.941 3.059 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.300 1.300 24 C -0.113 4.113 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.111 4.111 28 C -0.108 4.108 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.207 0.793 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.405 0.595 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.379 0.621 41 H 0.247 0.753 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.045 0.955 50 H 0.081 0.919 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -11.137 12.738 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.205 6.205 4 C 0.171 3.829 5 N -0.281 5.281 6 C 0.009 3.991 7 C -0.226 4.226 8 C -0.034 4.034 9 C -0.240 4.240 10 C 0.340 3.660 11 O -0.453 6.453 12 N -0.343 5.343 13 C -0.003 4.003 14 C 0.100 3.900 15 N -0.349 5.349 16 C -0.338 4.338 17 H 0.077 0.923 18 C -0.251 4.251 19 N -0.607 5.607 20 Si 0.773 3.227 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.228 1.228 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.223 0.777 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.213 0.787 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.361 -11.823 12.587 17.430 hybrid contribution 0.758 0.889 -1.756 2.109 sum -1.602 -10.934 10.832 15.474 Atomic orbital electron populations 1.21809 0.91710 1.04099 1.02726 1.22879 0.96145 0.80229 1.02553 1.86513 1.16448 1.31658 1.85889 1.19990 0.84776 0.89050 0.89062 1.67557 1.07844 1.31518 1.21202 1.23443 0.88451 0.99391 0.87838 1.22360 1.03384 0.91789 1.05095 1.21964 0.90230 1.01798 0.89387 1.20093 0.95336 0.91758 1.16787 1.18185 0.87597 0.83587 0.76629 1.90745 1.15956 1.86615 1.51959 1.45591 1.11026 1.04465 1.73174 1.21760 0.92808 0.86079 0.99647 1.20012 0.89804 0.91018 0.89162 1.42454 1.04300 1.87652 1.00460 1.19194 0.91854 1.38396 0.84314 0.92343 1.25072 0.95676 1.04697 0.99692 1.69739 1.00037 1.59775 1.31175 0.85556 0.77174 0.76384 0.83563 1.20661 1.22422 1.22820 1.21770 0.97716 0.95408 1.00425 1.21297 0.98655 0.96354 0.98020 1.21452 0.98591 0.97751 0.96728 1.21432 0.97846 0.94279 1.01351 1.21665 0.99325 0.98253 0.95309 0.87381 0.92250 0.92782 0.91550 0.90931 0.77651 0.80146 0.82831 0.75764 0.91679 0.95140 0.78731 0.94425 0.94409 0.91035 0.92522 0.93944 0.90870 0.92171 0.90608 0.93595 0.90024 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.06 1.42 6.03 71.98 0.43 1.85 16 3 O -0.30 -10.38 8.22 -66.40 -0.55 -10.93 16 4 C 0.35 11.43 7.51 85.13 0.64 12.07 16 5 N -0.56 -14.59 9.21 -307.99 -2.84 -17.42 16 6 C 0.17 3.06 11.17 84.71 0.95 4.01 16 7 C -0.21 -3.79 10.09 22.32 0.23 -3.57 16 8 C -0.01 -0.20 9.64 22.72 0.22 0.02 16 9 C -0.23 -7.71 5.90 -19.91 -0.12 -7.82 16 10 C 0.55 21.47 7.77 86.69 0.67 22.14 16 11 O -0.57 -26.07 15.19 16.79 0.26 -25.82 16 12 N -0.69 -24.78 5.05 -466.30 -2.35 -27.13 16 13 C 0.12 4.56 4.36 86.38 0.38 4.94 16 14 C 0.19 6.61 0.41 3.61 0.00 6.61 16 15 N -0.71 -30.41 3.40 -303.34 -1.03 -31.44 16 16 C -0.21 -10.44 8.70 84.03 0.73 -9.71 16 17 H 0.06 3.09 6.77 -2.91 -0.02 3.07 16 18 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 19 N -0.96 -53.91 13.07 21.65 0.28 -53.63 16 20 Si 0.94 45.94 29.55 68.60 2.03 47.96 16 21 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 24 C -0.11 -3.82 4.52 30.59 0.14 -3.68 16 25 C -0.11 -3.43 5.77 30.59 0.18 -3.26 16 26 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 27 C -0.11 -3.03 5.75 30.59 0.18 -2.86 16 28 C -0.11 -2.99 4.65 30.60 0.14 -2.84 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.07 1.63 8.10 -2.38 -0.02 1.61 16 34 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 3.57 6.52 -2.91 -0.02 3.55 16 37 H 0.40 13.49 5.49 -92.71 -0.51 12.99 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.03 1.32 7.51 -2.38 -0.02 1.31 16 40 H 0.38 17.31 6.64 -92.70 -0.62 16.69 16 41 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 42 H 0.04 1.45 7.23 -2.39 -0.02 1.44 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.73 7.61 -2.39 -0.02 1.71 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.05 1.53 6.93 -2.39 -0.02 1.51 16 50 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.06 1.67 7.28 -2.39 -0.02 1.65 16 Total: -1.00 -70.30 402.99 1.77 -68.53 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.18 Total: 39.63 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.15 Total: 10.24 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.94 Total: -129.63 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.29 Total: -36.75 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.30 1.77 -68.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120084253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.996 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds