Wall clock time and date at job start Wed Apr 1 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47109 * 2 1 4 4 C 1.35652 * 117.00153 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.53895 * 0.26492 * 4 3 2 6 6 C 1.38304 * 118.44143 * 180.26323 * 5 4 3 7 7 C 1.38766 * 119.43856 * 359.73541 * 6 5 4 8 8 N 1.31377 * 121.07003 * 359.97438 * 7 6 5 9 9 C 1.32854 * 121.69622 * 0.02562 * 8 7 6 10 10 C 1.47834 * 119.78089 * 180.02562 * 9 8 7 11 11 O 1.21561 * 119.99594 * 220.18121 * 10 9 8 12 12 N 1.34778 * 120.00270 * 40.18659 * 10 9 8 13 13 C 1.46920 * 120.62881 * 356.26294 * 12 10 9 14 14 C 1.53194 * 108.77315 * 126.37331 * 13 12 10 15 15 C 1.53037 * 109.31592 * 54.63446 * 14 13 12 16 16 H 1.08999 * 109.45935 * 178.61524 * 15 14 13 17 17 C 1.52999 * 109.44858 * 58.64564 * 15 14 13 18 18 C 1.53044 * 109.53641 * 298.63351 * 15 14 13 19 19 H 1.09004 * 109.49556 * 301.41551 * 18 15 14 20 20 C 1.53000 * 109.49866 * 181.34807 * 18 15 14 21 21 N 1.46496 * 109.46976 * 175.06354 * 20 18 15 22 22 C 1.36936 * 119.99829 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99845 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00168 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99891 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00220 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47167 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47208 * 119.99666 * 26 24 22 29 29 H 1.48506 * 109.47167 * 240.00078 * 26 24 22 30 30 C 1.46924 * 120.62633 * 176.24244 * 12 10 9 31 31 H 1.09001 * 109.47230 * 60.00277 * 1 2 3 32 32 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47019 * 300.00127 * 1 2 3 34 34 H 1.09001 * 109.47467 * 239.99952 * 2 1 3 35 35 H 1.09001 * 109.47230 * 119.99723 * 2 1 3 36 36 H 1.08003 * 120.78390 * 0.02562 * 5 4 3 37 37 H 1.07998 * 120.28033 * 179.70595 * 6 5 4 38 38 H 1.08001 * 119.46542 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.58821 * 6.58658 * 13 12 10 40 40 H 1.09003 * 109.70330 * 246.22953 * 13 12 10 41 41 H 1.09007 * 109.49506 * 294.67594 * 14 13 12 42 42 H 1.09006 * 109.49821 * 174.58738 * 14 13 12 43 43 H 1.08993 * 109.47282 * 299.94293 * 17 15 14 44 44 H 1.09001 * 109.46622 * 59.94125 * 17 15 14 45 45 H 1.09005 * 109.47082 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.46967 * 295.06947 * 20 18 15 47 47 H 1.08996 * 109.46742 * 55.06732 * 20 18 15 48 48 H 0.96997 * 120.00531 * 0.02562 * 21 20 18 49 49 H 0.96998 * 120.00393 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58439 * 113.84600 * 30 12 10 51 51 H 1.08994 * 109.59357 * 353.41555 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.2104 0.4281 -0.0066 6 6 5.5739 0.6593 -0.0013 7 6 6.0442 1.9648 0.0042 8 7 5.2154 2.9841 0.0040 9 6 3.8980 2.8125 -0.0010 10 6 3.0041 3.9900 -0.0016 11 8 1.9936 3.9863 0.6741 12 7 3.3094 5.0676 -0.7514 13 6 4.5670 5.1201 -1.5093 14 6 4.2468 5.4310 -2.9748 15 6 3.4136 6.7125 -3.0500 16 1 3.2052 6.9495 -4.0933 17 6 4.1920 7.8645 -2.4112 18 6 2.0950 6.5104 -2.2998 19 1 1.5514 5.6737 -2.7387 20 6 1.2483 7.7806 -2.4040 21 7 -0.0601 7.5471 -1.7880 22 6 -0.9934 8.5488 -1.7625 23 1 -0.7650 9.5108 -2.1970 24 6 -2.2331 8.3278 -1.1784 25 7 -2.5117 7.1552 -0.6494 26 14 -3.5065 9.6940 -1.1443 27 1 -2.9510 10.9049 -1.8002 28 1 -4.7253 9.2530 -1.8689 29 1 -3.8553 10.0106 0.2641 30 6 2.3908 6.2117 -0.8267 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8207 -0.5792 -0.0114 37 1 6.2668 -0.1691 -0.0010 38 1 7.1089 2.1459 0.0087 39 1 5.0744 4.1577 -1.4424 40 1 5.2092 5.9009 -1.1019 41 1 3.6829 4.6045 -3.4072 42 1 5.1754 5.5678 -3.5290 43 1 4.4001 7.6279 -1.3678 44 1 5.1312 8.0085 -2.9454 45 1 3.5991 8.7776 -2.4650 46 1 1.7529 8.5969 -1.8872 47 1 1.1142 8.0427 -3.4535 48 1 -0.2655 6.6829 -1.3982 49 1 -3.3780 7.0006 -0.2415 50 1 2.8535 7.0829 -0.3630 51 1 1.4624 5.9697 -0.3094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133371607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:48 Heat of formation + Delta-G solvation = -16.717677 kcal Electronic energy + Delta-G solvation = -31831.327161 eV Core-core repulsion = 27731.755449 eV Total energy + Delta-G solvation = -4099.571713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24090 -39.78399 -38.52148 -37.73373 -34.81946 -33.46831 -32.54458 -32.32221 -31.71577 -30.26256 -29.65056 -27.53532 -25.94790 -25.08974 -24.51992 -23.54245 -23.01152 -22.39456 -21.06249 -20.27562 -18.59618 -18.17526 -17.47435 -16.99324 -16.85920 -16.51080 -15.93635 -15.46437 -14.95881 -14.87720 -14.74623 -14.63392 -14.18368 -14.02315 -13.69647 -13.55513 -13.38665 -12.97318 -12.89220 -12.84774 -12.78274 -12.56989 -12.51951 -12.26215 -11.75561 -11.56990 -11.46268 -11.14171 -11.12570 -10.91124 -10.80987 -10.73629 -10.54677 -10.21609 -10.18294 -10.05895 -10.02727 -9.85415 -9.54094 -9.31384 -8.77156 -8.69775 -8.22923 -6.79652 -5.63849 -2.93136 0.52356 0.92542 2.79994 2.81805 3.12082 3.50743 3.53124 3.55607 3.58378 4.09890 4.29161 4.38597 4.61263 4.66910 4.67599 4.77455 4.83325 4.94081 4.96542 5.01448 5.05008 5.12276 5.35189 5.41331 5.47769 5.57393 5.63982 5.65815 5.66698 5.70325 5.72821 5.80111 5.91699 5.95416 5.98663 6.05792 6.10631 6.12524 6.15649 6.28082 6.45313 6.47819 6.49830 6.70238 6.81709 6.89730 6.98460 7.01338 7.49194 7.68025 7.80591 8.42456 8.53867 9.64802 10.23921 10.58191 11.58523 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003308 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.279901 B = 8461.199405 C =10548.197933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.280 6.280 4 C 0.136 3.864 5 C -0.175 4.175 6 C -0.113 4.113 7 C 0.050 3.950 8 N -0.415 5.415 9 C 0.055 3.945 10 C 0.572 3.428 11 O -0.509 6.509 12 N -0.593 5.593 13 C 0.101 3.899 14 C -0.131 4.131 15 C -0.084 4.084 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.102 4.102 19 H 0.072 0.928 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 C 0.121 3.879 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.023 0.977 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.972 -17.211 -1.913 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.191 6.191 4 C 0.085 3.915 5 C -0.201 4.201 6 C -0.132 4.132 7 C -0.110 4.110 8 N -0.127 5.127 9 C -0.084 4.084 10 C 0.357 3.643 11 O -0.383 6.383 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.169 4.169 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.209 4.209 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 C 0.000 4.000 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.428 -16.043 -1.549 26.021 hybrid contribution -0.920 -0.772 0.080 1.204 sum 19.508 -16.815 -1.469 25.796 Atomic orbital electron populations 1.21774 0.91913 1.02735 1.04658 1.22945 0.96944 0.81465 1.01075 1.86351 1.16943 1.29408 1.86368 1.19953 0.84317 0.93649 0.93545 1.21734 0.94156 0.98685 1.05533 1.22150 0.95190 0.98863 0.97044 1.22750 0.99947 0.87978 1.00283 1.67810 1.01585 1.34810 1.08471 1.20677 0.90358 0.91450 1.05876 1.17610 0.84516 0.81555 0.80600 1.90883 1.25890 1.80399 1.41135 1.47940 1.21019 1.17135 1.46479 1.22086 0.85555 1.03899 0.90620 1.21996 1.00174 0.98213 0.96532 1.21071 0.94785 0.94635 0.99865 0.91044 1.21980 0.99474 0.98578 1.00888 1.21687 0.95422 1.00026 0.94980 0.90942 1.20676 0.86639 0.93286 0.96091 1.42438 1.10842 1.14825 1.69682 1.19246 0.93421 0.93110 1.31231 0.91229 1.24750 0.97954 0.96901 1.01409 1.69690 1.22579 1.21615 1.43847 0.86150 0.81834 0.81252 0.77159 1.20632 1.21990 1.21930 1.21767 0.94497 0.86751 0.97010 0.91012 0.90326 0.90870 0.91975 0.91883 0.83753 0.84094 0.81829 0.88096 0.91163 0.91996 0.91101 0.92324 0.93217 0.91874 0.95905 0.96218 0.78094 0.93616 0.91245 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.10 16 2 C 0.05 0.49 5.48 37.16 0.20 0.69 16 3 O -0.28 -4.08 8.90 -34.69 -0.31 -4.39 16 4 C 0.14 1.80 6.67 -38.56 -0.26 1.54 16 5 C -0.17 -1.55 9.13 -39.15 -0.36 -1.91 16 6 C -0.11 -0.80 10.10 -39.36 -0.40 -1.20 16 7 C 0.05 0.42 11.17 -17.55 -0.20 0.23 16 8 N -0.41 -5.05 7.28 -9.71 -0.07 -5.12 16 9 C 0.06 0.82 6.01 -82.89 -0.50 0.32 16 10 C 0.57 10.50 7.28 -12.33 -0.09 10.41 16 11 O -0.51 -11.46 15.55 -10.72 -0.17 -11.62 16 12 N -0.59 -9.80 2.97 -173.88 -0.52 -10.32 16 13 C 0.10 1.30 5.55 -3.71 -0.02 1.28 16 14 C -0.13 -1.56 5.62 -26.61 -0.15 -1.71 16 15 C -0.08 -1.15 2.71 -90.58 -0.25 -1.39 16 16 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.15 -1.89 8.11 37.16 0.30 -1.59 16 18 C -0.10 -1.78 2.15 -90.49 -0.19 -1.98 16 19 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 20 C 0.16 3.37 5.19 -4.04 -0.02 3.35 16 21 N -0.73 -19.51 5.38 -59.91 -0.32 -19.83 16 22 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 26 Si 0.90 23.24 29.55 -169.99 -5.02 18.21 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 C 0.12 2.24 5.04 -3.71 -0.02 2.22 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 35 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 36 H 0.14 0.88 6.46 -52.48 -0.34 0.54 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.10 1.23 4.58 -51.93 -0.24 0.99 16 40 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 41 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.75 4.98 -51.93 -0.26 0.49 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 46 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 11.00 6.90 -40.82 -0.28 10.71 16 49 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.07 1.24 6.69 -51.93 -0.35 0.89 16 51 H 0.10 2.32 6.23 -51.93 -0.32 1.99 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -36.38 396.77 -9.33 -45.71 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.82 Total: 8.60 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.81 Total: 1.54 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.19 Total: -64.03 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.48 Total: -16.01 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.38 -9.33 -45.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133371607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.990 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds