Wall clock time and date at job start Wed Apr 1 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47109 * 2 1 4 4 C 1.35652 * 117.00153 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.53895 * 0.26492 * 4 3 2 6 6 C 1.38304 * 118.44143 * 180.26323 * 5 4 3 7 7 C 1.38766 * 119.43856 * 359.73541 * 6 5 4 8 8 N 1.31377 * 121.07003 * 359.97438 * 7 6 5 9 9 C 1.32854 * 121.69622 * 0.02562 * 8 7 6 10 10 C 1.47834 * 119.78089 * 180.02562 * 9 8 7 11 11 O 1.21561 * 119.99594 * 220.18121 * 10 9 8 12 12 N 1.34778 * 120.00270 * 40.18659 * 10 9 8 13 13 C 1.46920 * 120.62881 * 356.26294 * 12 10 9 14 14 C 1.53194 * 108.77315 * 126.37331 * 13 12 10 15 15 C 1.53037 * 109.31592 * 54.63446 * 14 13 12 16 16 H 1.08999 * 109.45935 * 178.61524 * 15 14 13 17 17 C 1.52999 * 109.44858 * 58.64564 * 15 14 13 18 18 C 1.53044 * 109.53641 * 298.63351 * 15 14 13 19 19 H 1.09004 * 109.49556 * 301.41551 * 18 15 14 20 20 C 1.53000 * 109.49866 * 181.34807 * 18 15 14 21 21 N 1.46496 * 109.46976 * 175.06354 * 20 18 15 22 22 C 1.36936 * 119.99829 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99845 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00168 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99891 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00220 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47167 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47208 * 119.99666 * 26 24 22 29 29 H 1.48506 * 109.47167 * 240.00078 * 26 24 22 30 30 C 1.46924 * 120.62633 * 176.24244 * 12 10 9 31 31 H 1.09001 * 109.47230 * 60.00277 * 1 2 3 32 32 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47019 * 300.00127 * 1 2 3 34 34 H 1.09001 * 109.47467 * 239.99952 * 2 1 3 35 35 H 1.09001 * 109.47230 * 119.99723 * 2 1 3 36 36 H 1.08003 * 120.78390 * 0.02562 * 5 4 3 37 37 H 1.07998 * 120.28033 * 179.70595 * 6 5 4 38 38 H 1.08001 * 119.46542 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.58821 * 6.58658 * 13 12 10 40 40 H 1.09003 * 109.70330 * 246.22953 * 13 12 10 41 41 H 1.09007 * 109.49506 * 294.67594 * 14 13 12 42 42 H 1.09006 * 109.49821 * 174.58738 * 14 13 12 43 43 H 1.08993 * 109.47282 * 299.94293 * 17 15 14 44 44 H 1.09001 * 109.46622 * 59.94125 * 17 15 14 45 45 H 1.09005 * 109.47082 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.46967 * 295.06947 * 20 18 15 47 47 H 1.08996 * 109.46742 * 55.06732 * 20 18 15 48 48 H 0.96997 * 120.00531 * 0.02562 * 21 20 18 49 49 H 0.96998 * 120.00393 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58439 * 113.84600 * 30 12 10 51 51 H 1.08994 * 109.59357 * 353.41555 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.2104 0.4281 -0.0066 6 6 5.5739 0.6593 -0.0013 7 6 6.0442 1.9648 0.0042 8 7 5.2154 2.9841 0.0040 9 6 3.8980 2.8125 -0.0010 10 6 3.0041 3.9900 -0.0016 11 8 1.9936 3.9863 0.6741 12 7 3.3094 5.0676 -0.7514 13 6 4.5670 5.1201 -1.5093 14 6 4.2468 5.4310 -2.9748 15 6 3.4136 6.7125 -3.0500 16 1 3.2052 6.9495 -4.0933 17 6 4.1920 7.8645 -2.4112 18 6 2.0950 6.5104 -2.2998 19 1 1.5514 5.6737 -2.7387 20 6 1.2483 7.7806 -2.4040 21 7 -0.0601 7.5471 -1.7880 22 6 -0.9934 8.5488 -1.7625 23 1 -0.7650 9.5108 -2.1970 24 6 -2.2331 8.3278 -1.1784 25 7 -2.5117 7.1552 -0.6494 26 14 -3.5065 9.6940 -1.1443 27 1 -2.9510 10.9049 -1.8002 28 1 -4.7253 9.2530 -1.8689 29 1 -3.8553 10.0106 0.2641 30 6 2.3908 6.2117 -0.8267 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8207 -0.5792 -0.0114 37 1 6.2668 -0.1691 -0.0010 38 1 7.1089 2.1459 0.0087 39 1 5.0744 4.1577 -1.4424 40 1 5.2092 5.9009 -1.1019 41 1 3.6829 4.6045 -3.4072 42 1 5.1754 5.5678 -3.5290 43 1 4.4001 7.6279 -1.3678 44 1 5.1312 8.0085 -2.9454 45 1 3.5991 8.7776 -2.4650 46 1 1.7529 8.5969 -1.8872 47 1 1.1142 8.0427 -3.4535 48 1 -0.2655 6.6829 -1.3982 49 1 -3.3780 7.0006 -0.2415 50 1 2.8535 7.0829 -0.3630 51 1 1.4624 5.9697 -0.3094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133371607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:47 Heat of formation + Delta-G solvation = -41.443660 kcal Electronic energy + Delta-G solvation = -31832.399360 eV Core-core repulsion = 27731.755449 eV Total energy + Delta-G solvation = -4100.643912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19351 -40.96164 -39.39330 -39.09586 -36.63205 -34.93957 -33.51967 -33.34755 -33.09916 -31.52745 -30.99229 -28.72211 -27.50378 -26.28894 -25.50268 -24.90372 -24.45591 -23.16836 -22.56840 -21.47732 -19.80004 -19.20394 -18.91887 -18.52816 -17.90219 -17.44568 -17.04027 -16.81275 -16.48209 -16.20158 -15.84534 -15.69788 -15.41064 -15.28069 -15.02758 -14.92833 -14.49995 -14.42009 -14.32053 -14.03231 -13.80495 -13.68851 -13.52115 -13.27322 -13.05586 -12.88979 -12.83471 -12.64704 -12.45900 -12.32682 -12.12001 -12.01289 -11.91289 -11.87979 -11.74557 -11.38593 -11.33843 -11.23296 -10.95249 -10.80050 -10.34991 -9.68596 -9.44356 -9.01488 -7.94565 -5.25608 -0.29333 0.20515 1.43809 1.46612 1.56677 1.61590 1.89304 2.06245 2.54727 2.68089 3.13771 3.37982 3.57138 3.65144 3.71498 3.83620 3.84676 3.96606 3.98856 4.01354 4.09777 4.10696 4.20855 4.27307 4.29534 4.39019 4.46351 4.55210 4.60681 4.71417 4.76318 4.78907 4.83394 4.83810 4.89160 4.93234 5.01340 5.01863 5.10579 5.16188 5.16697 5.24449 5.28456 5.38672 5.45641 5.47909 5.55768 5.61841 6.20281 6.25453 6.37756 6.73351 7.11021 7.30435 8.06645 8.29604 9.29238 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003308 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.279901 B = 8461.199405 C =10548.197933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.044 3.956 3 O -0.326 6.326 4 C 0.114 3.886 5 C -0.168 4.168 6 C -0.087 4.087 7 C 0.055 3.945 8 N -0.431 5.431 9 C 0.014 3.986 10 C 0.560 3.440 11 O -0.575 6.575 12 N -0.592 5.592 13 C 0.099 3.901 14 C -0.123 4.123 15 C -0.079 4.079 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.088 4.088 19 H 0.046 0.954 20 C 0.161 3.839 21 N -0.749 5.749 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.979 3.021 27 H -0.261 1.261 28 H -0.292 1.292 29 H -0.294 1.294 30 C 0.130 3.870 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.177 0.823 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.111 0.889 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.027 0.973 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.073 0.927 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.250 -18.534 -3.453 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 O -0.239 6.239 4 C 0.064 3.936 5 C -0.194 4.194 6 C -0.106 4.106 7 C -0.107 4.107 8 N -0.143 5.143 9 C -0.122 4.122 10 C 0.348 3.652 11 O -0.454 6.454 12 N -0.323 5.323 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.098 4.098 16 H 0.101 0.899 17 C -0.205 4.205 18 C -0.108 4.108 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.185 1.185 28 H -0.219 1.219 29 H -0.222 1.222 30 C 0.008 3.992 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.194 0.806 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 24.764 -17.325 -3.145 30.387 hybrid contribution -2.079 -0.474 0.558 2.204 sum 22.686 -17.799 -2.587 28.951 Atomic orbital electron populations 1.21829 0.92849 1.04229 1.02282 1.23223 0.96329 0.80121 1.03349 1.86309 1.18445 1.32184 1.86918 1.20237 0.84378 0.94425 0.94540 1.22151 0.94517 0.98641 1.04075 1.22742 0.94962 0.99797 0.93120 1.23569 1.01160 0.87940 0.97985 1.67697 1.00492 1.36746 1.09394 1.20116 0.91134 0.90386 1.10552 1.18401 0.84436 0.82779 0.79553 1.90821 1.28933 1.81768 1.43841 1.48059 1.21724 1.16083 1.46441 1.22369 0.83857 1.05218 0.90734 1.21982 1.01379 0.96605 0.96105 1.21071 0.92550 0.96422 0.99707 0.89865 1.21944 1.00516 0.97159 1.00838 1.21537 0.97223 0.97306 0.94732 0.93544 1.20856 0.84762 0.95218 0.95693 1.42713 1.12710 1.13742 1.70004 1.19720 0.93930 0.93808 1.30115 0.90149 1.25697 1.00425 0.99468 1.01755 1.69895 1.22897 1.24110 1.45459 0.84996 0.78704 0.78731 0.76861 1.18494 1.21938 1.22179 1.21414 0.92947 0.87747 0.97124 0.93236 0.86795 0.93383 0.89277 0.89646 0.80600 0.79054 0.77816 0.86808 0.89760 0.93056 0.87057 0.92981 0.89898 0.93023 0.95032 0.95530 0.79970 0.94171 0.90862 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.28 71.98 0.74 -2.49 16 2 C 0.04 0.84 5.48 71.98 0.39 1.24 16 3 O -0.33 -10.23 8.90 -74.34 -0.66 -10.89 16 4 C 0.11 3.06 6.67 22.93 0.15 3.21 16 5 C -0.17 -2.45 9.13 22.55 0.21 -2.25 16 6 C -0.09 -0.78 10.10 22.41 0.23 -0.55 16 7 C 0.06 0.70 11.17 84.89 0.95 1.65 16 8 N -0.43 -9.87 7.28 -184.63 -1.34 -11.21 16 9 C 0.01 0.42 6.01 41.93 0.25 0.68 16 10 C 0.56 22.55 7.28 86.78 0.63 23.18 16 11 O -0.57 -29.27 15.55 11.43 0.18 -29.09 16 12 N -0.59 -20.91 2.97 -822.32 -2.44 -23.35 16 13 C 0.10 2.46 5.55 86.36 0.48 2.93 16 14 C -0.12 -2.67 5.62 30.67 0.17 -2.50 16 15 C -0.08 -2.04 2.71 -10.77 -0.03 -2.07 16 16 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.15 -3.36 8.11 71.98 0.58 -2.77 16 18 C -0.09 -3.27 2.15 -10.71 -0.02 -3.29 16 19 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 20 C 0.16 7.00 5.19 86.38 0.45 7.44 16 21 N -0.75 -42.22 5.38 -343.46 -1.85 -44.06 16 22 C -0.24 -14.65 9.99 84.03 0.84 -13.81 16 23 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 24 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 25 N -0.97 -65.13 13.06 21.65 0.28 -64.85 16 26 Si 0.98 49.14 29.55 68.60 2.03 51.17 16 27 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 30 C 0.13 5.27 5.04 86.36 0.44 5.70 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.18 7.68 -2.39 -0.02 1.16 16 35 H 0.09 1.20 7.71 -2.39 -0.02 1.19 16 36 H 0.18 1.35 6.46 -2.91 -0.02 1.34 16 37 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.11 2.61 4.58 -2.39 -0.01 2.59 16 40 H 0.08 1.86 6.70 -2.39 -0.02 1.84 16 41 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.05 1.26 4.98 -2.39 -0.01 1.24 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.30 6.57 -2.38 -0.02 1.28 16 46 H 0.03 1.34 6.73 -2.39 -0.02 1.32 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.37 22.95 6.90 -92.71 -0.64 22.31 16 49 H 0.25 16.11 8.31 -92.71 -0.77 15.34 16 50 H 0.07 2.82 6.69 -2.39 -0.02 2.80 16 51 H 0.05 2.43 6.23 -2.39 -0.01 2.42 16 Total: -1.00 -90.21 396.77 3.43 -86.79 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.31 Total: 33.79 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.93 Total: 11.70 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -5.35 Total: -143.48 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.48 Total: -39.98 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.17 kcal Total: -90.21 3.43 -86.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133371607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.344 kcal (2) G-P(sol) polarization free energy of solvation -90.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds