Wall clock time and date at job start Wed Apr 1 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46826 * 2 1 4 4 C 1.36940 * 119.99860 * 275.91051 * 3 2 1 5 5 H 1.07997 * 119.99801 * 34.08692 * 4 3 2 6 6 C 1.38812 * 119.99879 * 214.08973 * 4 3 2 7 7 N 1.31615 * 120.00088 * 17.01474 * 6 4 3 8 8 Si 1.86803 * 119.99892 * 197.00844 * 6 4 3 9 9 H 1.48502 * 109.46821 * 90.00245 * 8 6 4 10 10 H 1.48489 * 109.47160 * 210.00126 * 8 6 4 11 11 H 1.48502 * 109.47193 * 330.00554 * 8 6 4 12 12 C 1.46502 * 120.00405 * 95.91000 * 3 2 1 13 13 H 1.08994 * 109.47188 * 177.15647 * 12 3 2 14 14 C 1.53004 * 109.46926 * 57.15508 * 12 3 2 15 15 C 1.52997 * 109.46968 * 297.15907 * 12 3 2 16 16 N 1.46498 * 109.47091 * 304.99882 * 15 12 3 17 17 C 1.34777 * 120.00231 * 180.02562 * 16 15 12 18 18 O 1.21556 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00123 * 179.97438 * 17 16 15 20 20 C 1.39570 * 120.14225 * 359.71523 * 19 17 16 21 21 C 1.37963 * 119.84940 * 179.74539 * 20 19 17 22 22 C 1.38362 * 120.14283 * 0.53996 * 21 20 19 23 23 C 1.50701 * 119.85231 * 179.72033 * 22 21 20 24 24 C 1.52997 * 109.46968 * 270.02047 * 23 22 21 25 25 C 1.50700 * 109.47340 * 179.97438 * 24 23 22 26 26 N 1.34779 * 120.00362 * 179.97438 * 25 24 23 27 27 O 1.21287 * 119.99677 * 359.97438 * 25 24 23 28 28 C 1.38354 * 120.29224 * 359.73308 * 22 21 20 29 29 C 1.37950 * 120.14928 * 359.97438 * 28 22 21 30 30 H 1.08997 * 109.47125 * 60.00712 * 1 2 3 31 31 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47084 * 300.00008 * 1 2 3 33 33 H 1.08991 * 109.47142 * 239.99643 * 2 1 3 34 34 H 1.09005 * 109.46887 * 119.99093 * 2 1 3 35 35 H 0.97002 * 120.00294 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.46788 * 180.02562 * 14 12 3 37 37 H 1.09003 * 109.47147 * 300.00234 * 14 12 3 38 38 H 1.09001 * 109.47113 * 60.00328 * 14 12 3 39 39 H 1.09005 * 109.47321 * 64.99732 * 15 12 3 40 40 H 1.09001 * 109.46969 * 185.00023 * 15 12 3 41 41 H 0.97006 * 119.99965 * 0.02562 * 16 15 12 42 42 H 1.07996 * 120.07831 * 0.02562 * 20 19 17 43 43 H 1.07999 * 119.92998 * 180.27759 * 21 20 19 44 44 H 1.09005 * 109.47329 * 30.01400 * 23 22 21 45 45 H 1.08998 * 109.47308 * 150.01645 * 23 22 21 46 46 H 1.08999 * 109.47190 * 300.00076 * 24 23 22 47 47 H 1.08998 * 109.47434 * 59.99675 * 24 23 22 48 48 H 0.97000 * 119.99354 * 0.02562 * 26 25 24 49 49 H 0.96992 * 119.99848 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.92564 * 179.97438 * 28 22 21 51 51 H 1.08000 * 120.08039 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1313 2.0675 -1.1797 5 1 1.4231 1.8926 -1.9760 6 6 3.1562 2.9877 -1.3518 7 7 4.1988 2.9695 -0.5487 8 14 3.0557 4.2519 -2.7234 9 1 2.3779 5.4741 -2.2213 10 1 4.4260 4.5977 -3.1792 11 1 2.2833 3.6889 -3.8599 12 6 2.3856 2.0284 1.2620 13 1 2.7709 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1518 2.1303 2.1609 16 7 0.0788 2.8207 1.4410 17 6 -1.1108 3.0267 2.0402 18 8 -1.2935 2.6392 3.1777 19 6 -2.1935 3.7239 1.3138 20 6 -1.9850 4.1753 0.0097 21 6 -3.0012 4.8206 -0.6643 22 6 -4.2212 5.0304 -0.0463 23 6 -5.3246 5.7416 -0.7864 24 6 -5.2232 7.2465 -0.5299 25 6 -6.3262 7.9578 -1.2705 26 7 -6.4357 9.2988 -1.1909 27 8 -7.1154 7.3235 -1.9382 28 6 -4.4324 4.5905 1.2483 29 6 -3.4267 3.9386 1.9314 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 4.9148 3.6128 -0.6687 36 1 3.7352 1.6810 2.9047 37 1 3.0769 0.2004 2.1684 38 1 4.3413 1.1271 1.3252 39 1 0.8191 1.1294 2.4362 40 1 1.4037 2.6900 3.0616 41 1 0.2245 3.1296 0.5331 42 1 -1.0318 4.0159 -0.4723 43 1 -2.8427 5.1665 -1.6751 44 1 -5.2290 5.5479 -1.8548 45 1 -6.2904 5.3775 -0.4362 46 1 -5.3187 7.4402 0.5385 47 1 -4.2573 7.6105 -0.8801 48 1 -5.8042 9.8060 -0.6572 49 1 -7.1454 9.7565 -1.6679 50 1 -5.3869 4.7578 1.7252 51 1 -3.5927 3.5960 2.9421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155160576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:49 Heat of formation + Delta-G solvation = -47.195255 kcal Electronic energy + Delta-G solvation = -30806.694435 eV Core-core repulsion = 26705.801115 eV Total energy + Delta-G solvation = -4100.893320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.15978 -39.68793 -38.38161 -36.85983 -34.20711 -33.97987 -33.68166 -31.93108 -31.31180 -30.77224 -29.92886 -28.19261 -26.18044 -24.74959 -23.95718 -22.60796 -22.08118 -21.61349 -20.65759 -19.79659 -19.29546 -17.73993 -17.69111 -17.11276 -16.78757 -16.18698 -15.60252 -15.21883 -15.04490 -14.80752 -14.56507 -14.44290 -14.15364 -14.06579 -13.57031 -13.53590 -13.19965 -13.06970 -12.86495 -12.68646 -12.37206 -12.22505 -11.84624 -11.83068 -11.53289 -11.50261 -11.48241 -11.08758 -10.99138 -10.92657 -10.85219 -10.69744 -10.34932 -10.30981 -10.09414 -10.09118 -9.66213 -9.48706 -9.45647 -8.97517 -8.79418 -8.55387 -8.34110 -6.68749 -5.91831 -3.41936 0.91251 1.39389 2.28269 3.04268 3.23715 3.26246 3.35899 3.36633 3.74923 4.01303 4.37677 4.39518 4.64826 4.68356 4.90943 4.95070 4.98125 5.19645 5.22776 5.25167 5.35580 5.39438 5.41784 5.71929 5.76366 5.87980 5.95700 6.01090 6.06160 6.18382 6.25781 6.33884 6.36759 6.37404 6.43893 6.48808 6.51284 6.53616 6.60569 6.67139 6.82048 6.89021 6.91014 6.91509 7.06511 7.16416 7.45113 7.53516 7.72929 7.87958 8.15745 8.40616 8.72458 9.12523 9.73925 10.32042 11.14253 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.002778 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.834044 B =10076.203021 C =11607.183125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.173 3.827 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.694 5.694 17 C 0.546 3.454 18 O -0.559 6.559 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.066 4.066 24 C -0.138 4.138 25 C 0.516 3.484 26 N -0.859 5.859 27 O -0.544 6.544 28 C -0.128 4.128 29 C -0.062 4.062 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.411 0.589 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.402 0.598 49 H 0.400 0.600 50 H 0.125 0.875 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 9.620 2.222 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.394 4.394 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.333 3.667 18 O -0.440 6.440 19 C -0.131 4.131 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.178 4.178 25 C 0.302 3.698 26 N -0.423 5.423 27 O -0.420 6.420 28 C -0.146 4.146 29 C -0.081 4.081 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.249 0.751 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.231 0.769 49 H 0.231 0.769 50 H 0.143 0.857 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.408 8.840 2.615 17.955 hybrid contribution 0.229 1.319 -1.082 1.721 sum -15.180 10.159 1.533 18.330 Atomic orbital electron populations 1.22421 0.99975 0.99000 1.01458 1.20777 0.91658 0.87452 0.98779 1.43869 1.75905 1.08291 1.02257 1.19100 1.07802 1.18758 0.93700 0.91835 1.25179 0.94493 1.01385 0.97771 1.69999 1.07243 1.36214 1.39695 0.86427 0.77090 0.81911 0.82191 1.21302 1.21730 1.20304 1.20537 0.89061 0.99481 0.84344 0.88021 1.21996 1.01029 0.98163 0.99126 1.22213 0.89108 0.95721 0.95388 1.45916 1.12087 1.57411 1.18983 1.18291 0.82687 0.79671 0.86050 1.90710 1.82041 1.52807 1.18405 1.20118 0.95396 1.02383 0.95178 1.21505 0.99551 0.95311 0.93412 1.21005 0.92668 1.00153 1.00249 1.19990 0.94852 0.97659 0.94364 1.20353 0.97179 0.91806 1.01056 1.21686 0.98157 0.96182 1.01777 1.20800 0.85801 0.82438 0.80782 1.43932 1.35942 1.08078 1.54323 1.90764 1.43811 1.66078 1.41390 1.20966 0.99259 1.00040 0.94339 1.21236 0.91434 0.95390 1.00006 0.93465 0.94836 0.93126 0.94098 0.94423 0.93506 0.94684 0.94950 0.90605 0.92728 0.92909 0.75116 0.84852 0.85491 0.89936 0.90045 0.88431 0.88327 0.76948 0.76946 0.85692 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.95 37.16 0.37 -2.71 16 2 C 0.14 2.80 5.75 -4.04 -0.02 2.77 16 3 N -0.58 -12.80 1.88 -165.66 -0.31 -13.12 16 4 C -0.26 -6.37 9.07 -15.06 -0.14 -6.51 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.30 4.86 -17.43 -0.08 0.22 16 7 N -0.89 -23.15 10.90 55.49 0.60 -22.55 16 8 Si 0.89 19.71 29.59 -169.99 -5.03 14.68 16 9 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.17 3.65 1.95 -67.93 -0.13 3.52 16 13 H 0.10 2.43 5.94 -51.93 -0.31 2.13 16 14 C -0.14 -2.88 9.05 37.16 0.34 -2.54 16 15 C 0.10 1.95 4.36 -4.04 -0.02 1.93 16 16 N -0.69 -12.76 4.23 -61.25 -0.26 -13.01 16 17 C 0.55 9.96 7.73 -12.33 -0.10 9.87 16 18 O -0.56 -11.65 16.35 5.32 0.09 -11.56 16 19 C -0.13 -1.95 5.87 -104.97 -0.62 -2.57 16 20 C -0.08 -1.09 9.54 -39.19 -0.37 -1.47 16 21 C -0.12 -1.42 9.68 -39.64 -0.38 -1.81 16 22 C -0.07 -0.71 5.14 -104.53 -0.54 -1.25 16 23 C -0.07 -0.59 4.63 -27.88 -0.13 -0.72 16 24 C -0.14 -0.93 5.68 -27.88 -0.16 -1.09 16 25 C 0.52 4.29 8.10 -10.98 -0.09 4.20 16 26 N -0.86 -4.02 8.87 31.22 0.28 -3.74 16 27 O -0.54 -6.97 16.82 5.55 0.09 -6.88 16 28 C -0.13 -1.39 9.68 -39.64 -0.38 -1.77 16 29 C -0.06 -0.83 9.60 -39.19 -0.38 -1.20 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.96 5.32 -51.93 -0.28 0.68 16 33 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 35 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 38 H 0.07 1.72 7.69 -51.93 -0.40 1.32 16 39 H 0.05 1.08 6.98 -51.93 -0.36 0.72 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.41 7.63 5.77 -40.82 -0.24 7.40 16 42 H 0.13 1.89 6.41 -52.49 -0.34 1.56 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 45 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.40 0.75 8.83 -40.82 -0.36 0.38 16 49 H 0.40 1.62 8.93 -40.82 -0.36 1.25 16 50 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 51 H 0.13 1.78 7.65 -52.49 -0.40 1.38 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -30.81 412.29 -9.05 -39.86 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.90 Total: 11.24 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.83 Total: -1.13 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.31 Total: -52.42 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.81 -9.05 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155160576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.334 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds