Wall clock time and date at job start Wed Apr 1 2020 04:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46826 * 2 1 4 4 C 1.36940 * 119.99860 * 275.91051 * 3 2 1 5 5 H 1.07997 * 119.99801 * 34.08692 * 4 3 2 6 6 C 1.38812 * 119.99879 * 214.08973 * 4 3 2 7 7 N 1.31615 * 120.00088 * 17.01474 * 6 4 3 8 8 Si 1.86803 * 119.99892 * 197.00844 * 6 4 3 9 9 H 1.48502 * 109.46821 * 90.00245 * 8 6 4 10 10 H 1.48489 * 109.47160 * 210.00126 * 8 6 4 11 11 H 1.48502 * 109.47193 * 330.00554 * 8 6 4 12 12 C 1.46502 * 120.00405 * 95.91000 * 3 2 1 13 13 H 1.08994 * 109.47188 * 177.15647 * 12 3 2 14 14 C 1.53004 * 109.46926 * 57.15508 * 12 3 2 15 15 C 1.52997 * 109.46968 * 297.15907 * 12 3 2 16 16 N 1.46498 * 109.47091 * 304.99882 * 15 12 3 17 17 C 1.34777 * 120.00231 * 180.02562 * 16 15 12 18 18 O 1.21556 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00123 * 179.97438 * 17 16 15 20 20 C 1.39570 * 120.14225 * 359.71523 * 19 17 16 21 21 C 1.37963 * 119.84940 * 179.74539 * 20 19 17 22 22 C 1.38362 * 120.14283 * 0.53996 * 21 20 19 23 23 C 1.50701 * 119.85231 * 179.72033 * 22 21 20 24 24 C 1.52997 * 109.46968 * 270.02047 * 23 22 21 25 25 C 1.50700 * 109.47340 * 179.97438 * 24 23 22 26 26 N 1.34779 * 120.00362 * 179.97438 * 25 24 23 27 27 O 1.21287 * 119.99677 * 359.97438 * 25 24 23 28 28 C 1.38354 * 120.29224 * 359.73308 * 22 21 20 29 29 C 1.37950 * 120.14928 * 359.97438 * 28 22 21 30 30 H 1.08997 * 109.47125 * 60.00712 * 1 2 3 31 31 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47084 * 300.00008 * 1 2 3 33 33 H 1.08991 * 109.47142 * 239.99643 * 2 1 3 34 34 H 1.09005 * 109.46887 * 119.99093 * 2 1 3 35 35 H 0.97002 * 120.00294 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.46788 * 180.02562 * 14 12 3 37 37 H 1.09003 * 109.47147 * 300.00234 * 14 12 3 38 38 H 1.09001 * 109.47113 * 60.00328 * 14 12 3 39 39 H 1.09005 * 109.47321 * 64.99732 * 15 12 3 40 40 H 1.09001 * 109.46969 * 185.00023 * 15 12 3 41 41 H 0.97006 * 119.99965 * 0.02562 * 16 15 12 42 42 H 1.07996 * 120.07831 * 0.02562 * 20 19 17 43 43 H 1.07999 * 119.92998 * 180.27759 * 21 20 19 44 44 H 1.09005 * 109.47329 * 30.01400 * 23 22 21 45 45 H 1.08998 * 109.47308 * 150.01645 * 23 22 21 46 46 H 1.08999 * 109.47190 * 300.00076 * 24 23 22 47 47 H 1.08998 * 109.47434 * 59.99675 * 24 23 22 48 48 H 0.97000 * 119.99354 * 0.02562 * 26 25 24 49 49 H 0.96992 * 119.99848 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.92564 * 179.97438 * 28 22 21 51 51 H 1.08000 * 120.08039 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1313 2.0675 -1.1797 5 1 1.4231 1.8926 -1.9760 6 6 3.1562 2.9877 -1.3518 7 7 4.1988 2.9695 -0.5487 8 14 3.0557 4.2519 -2.7234 9 1 2.3779 5.4741 -2.2213 10 1 4.4260 4.5977 -3.1792 11 1 2.2833 3.6889 -3.8599 12 6 2.3856 2.0284 1.2620 13 1 2.7709 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1518 2.1303 2.1609 16 7 0.0788 2.8207 1.4410 17 6 -1.1108 3.0267 2.0402 18 8 -1.2935 2.6392 3.1777 19 6 -2.1935 3.7239 1.3138 20 6 -1.9850 4.1753 0.0097 21 6 -3.0012 4.8206 -0.6643 22 6 -4.2212 5.0304 -0.0463 23 6 -5.3246 5.7416 -0.7864 24 6 -5.2232 7.2465 -0.5299 25 6 -6.3262 7.9578 -1.2705 26 7 -6.4357 9.2988 -1.1909 27 8 -7.1154 7.3235 -1.9382 28 6 -4.4324 4.5905 1.2483 29 6 -3.4267 3.9386 1.9314 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 4.9148 3.6128 -0.6687 36 1 3.7352 1.6810 2.9047 37 1 3.0769 0.2004 2.1684 38 1 4.3413 1.1271 1.3252 39 1 0.8191 1.1294 2.4362 40 1 1.4037 2.6900 3.0616 41 1 0.2245 3.1296 0.5331 42 1 -1.0318 4.0159 -0.4723 43 1 -2.8427 5.1665 -1.6751 44 1 -5.2290 5.5479 -1.8548 45 1 -6.2904 5.3775 -0.4362 46 1 -5.3187 7.4402 0.5385 47 1 -4.2573 7.6105 -0.8801 48 1 -5.8042 9.8060 -0.6572 49 1 -7.1454 9.7565 -1.6679 50 1 -5.3869 4.7578 1.7252 51 1 -3.5927 3.5960 2.9421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155160576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:48 Heat of formation + Delta-G solvation = -66.262285 kcal Electronic energy + Delta-G solvation = -30807.521244 eV Core-core repulsion = 26705.801115 eV Total energy + Delta-G solvation = -4101.720128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25457 -40.52157 -39.55781 -38.49382 -35.34224 -34.96375 -34.54870 -33.73482 -32.78256 -31.83603 -30.87573 -29.91767 -27.43841 -25.86767 -25.73078 -23.61967 -23.37447 -22.92962 -21.34128 -21.04065 -20.91298 -19.10521 -18.47532 -18.20110 -17.73314 -17.31611 -16.77566 -16.49959 -16.42713 -16.06229 -15.81061 -15.66674 -15.58133 -15.16896 -14.84714 -14.52006 -14.31644 -14.19704 -14.02860 -13.93684 -13.88780 -13.64280 -13.47498 -13.20041 -12.78757 -12.74514 -12.73037 -12.55214 -12.42978 -12.38191 -12.21839 -12.03477 -11.85414 -11.75972 -11.36333 -11.16937 -11.05016 -10.92830 -10.61260 -10.42366 -10.02992 -9.93658 -9.62913 -8.51042 -7.80665 -5.32496 -0.13896 0.43293 1.50399 1.54918 1.60795 1.68655 1.88697 2.35837 2.55779 2.66081 2.92303 3.33080 3.64803 3.71723 3.83373 3.91245 4.03098 4.06036 4.19834 4.27222 4.39336 4.45703 4.46201 4.53153 4.58043 4.67133 4.73042 4.80297 4.86953 4.89069 4.92662 4.94464 4.97810 5.06312 5.10539 5.21949 5.22412 5.32355 5.35936 5.43255 5.51326 5.59011 5.61076 5.71540 5.77242 5.85366 5.92692 5.96203 6.49881 6.51714 6.69881 7.24108 7.28901 7.39016 7.93236 8.46828 9.22869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.002778 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.834044 B =10076.203021 C =11607.183125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.061 0.939 6 C -0.031 4.031 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.303 1.303 11 H -0.273 1.273 12 C 0.179 3.821 13 H 0.073 0.927 14 C -0.135 4.135 15 C 0.113 3.887 16 N -0.694 5.694 17 C 0.546 3.454 18 O -0.591 6.591 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.051 4.051 23 C -0.063 4.063 24 C -0.133 4.133 25 C 0.514 3.486 26 N -0.841 5.841 27 O -0.596 6.596 28 C -0.119 4.119 29 C -0.068 4.068 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.249 0.751 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.418 0.582 49 H 0.405 0.595 50 H 0.155 0.845 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.048 10.878 1.983 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.392 4.392 5 H 0.078 0.922 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.231 1.231 11 H -0.198 1.198 12 C 0.072 3.928 13 H 0.091 0.909 14 C -0.194 4.194 15 C -0.012 4.012 16 N -0.343 5.343 17 C 0.335 3.665 18 O -0.474 6.474 19 C -0.155 4.155 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.052 4.052 23 C -0.101 4.101 24 C -0.172 4.172 25 C 0.300 3.700 26 N -0.405 5.405 27 O -0.477 6.477 28 C -0.136 4.136 29 C -0.087 4.087 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.248 0.752 42 H 0.141 0.859 43 H 0.164 0.836 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.249 0.751 49 H 0.236 0.764 50 H 0.173 0.827 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.360 10.134 2.387 20.243 hybrid contribution 0.768 0.951 -1.017 1.590 sum -16.592 11.085 1.369 20.002 Atomic orbital electron populations 1.22233 0.98288 1.00171 1.00632 1.20844 0.92812 0.86371 0.98698 1.43982 1.76041 1.09091 1.02055 1.19236 1.07165 1.18589 0.94170 0.92160 1.25736 0.94387 1.03002 0.99698 1.70133 1.07761 1.36734 1.41207 0.85550 0.76192 0.80217 0.80163 1.20631 1.23053 1.19775 1.20388 0.89908 0.98079 0.84423 0.90862 1.21865 0.99504 0.98919 0.99119 1.21961 0.88618 0.95712 0.94947 1.45883 1.12189 1.57429 1.18828 1.18752 0.82954 0.79070 0.85739 1.90678 1.82595 1.54334 1.19803 1.19960 0.95313 1.04286 0.95944 1.21455 0.99924 0.96090 0.93025 1.21222 0.92427 0.99436 1.00959 1.20178 0.94653 0.96263 0.94066 1.20323 0.96264 0.93199 1.00325 1.21670 0.98260 0.94389 1.02922 1.21052 0.85468 0.83258 0.80192 1.43808 1.35985 1.07147 1.53554 1.90750 1.45828 1.67321 1.43824 1.21239 0.99605 0.98522 0.94272 1.21309 0.91377 0.95905 1.00079 0.94166 0.92641 0.93953 0.94983 0.93648 0.94210 0.92994 0.93694 0.93456 0.93019 0.92819 0.75237 0.85861 0.83643 0.90602 0.90053 0.86310 0.86823 0.75060 0.76406 0.82743 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.95 71.98 0.72 -4.73 16 2 C 0.14 5.48 5.75 86.38 0.50 5.98 16 3 N -0.59 -26.10 1.88 -678.03 -1.28 -27.38 16 4 C -0.26 -12.68 9.07 84.03 0.76 -11.92 16 5 H 0.06 2.93 7.89 -2.91 -0.02 2.91 16 6 C -0.03 -1.53 4.86 84.86 0.41 -1.11 16 7 N -0.91 -48.56 10.90 21.65 0.24 -48.32 16 8 Si 0.95 40.72 29.59 68.60 2.03 42.75 16 9 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 C 0.18 7.64 1.95 44.99 0.09 7.73 16 13 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 14 C -0.13 -5.41 9.05 71.98 0.65 -4.76 16 15 C 0.11 4.39 4.36 86.38 0.38 4.77 16 16 N -0.69 -25.79 4.23 -465.96 -1.97 -27.76 16 17 C 0.55 20.08 7.73 86.79 0.67 20.75 16 18 O -0.59 -24.90 16.35 -3.89 -0.06 -24.96 16 19 C -0.15 -4.58 5.87 -20.09 -0.12 -4.70 16 20 C -0.09 -2.31 9.54 22.53 0.21 -2.09 16 21 C -0.12 -2.58 9.68 22.23 0.22 -2.36 16 22 C -0.05 -0.93 5.14 -19.81 -0.10 -1.03 16 23 C -0.06 -0.95 4.63 29.85 0.14 -0.81 16 24 C -0.13 -1.35 5.68 29.85 0.17 -1.18 16 25 C 0.51 7.33 8.10 87.66 0.71 8.04 16 26 N -0.84 -5.62 8.87 -173.52 -1.54 -7.16 16 27 O -0.60 -14.54 16.82 -3.05 -0.05 -14.59 16 28 C -0.12 -2.24 9.68 22.23 0.22 -2.03 16 29 C -0.07 -1.73 9.60 22.53 0.22 -1.51 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.57 5.32 -2.39 -0.01 1.55 16 33 H 0.03 1.31 8.09 -2.39 -0.02 1.30 16 34 H 0.05 1.72 6.29 -2.38 -0.01 1.70 16 35 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.65 6.56 -2.39 -0.02 1.63 16 38 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 39 H 0.05 2.03 6.98 -2.38 -0.02 2.02 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.41 15.46 5.77 -92.70 -0.53 14.93 16 42 H 0.12 3.50 6.41 -2.91 -0.02 3.48 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.08 1.28 8.04 -2.38 -0.02 1.26 16 45 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 46 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 48 H 0.42 0.18 8.83 -92.71 -0.82 -0.64 16 49 H 0.40 2.36 8.93 -92.71 -0.83 1.54 16 50 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 51 H 0.13 3.36 7.65 -2.91 -0.02 3.34 16 Total: -1.00 -67.51 412.29 1.99 -65.52 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -1.21 Total: 32.89 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.83 Total: 9.02 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.55 Total: -110.62 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.11 Total: -39.56 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -67.51 1.99 -65.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155160576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.745 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds