Wall clock time and date at job start Wed Apr 1 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46767 * 2 1 4 4 C 1.35424 * 116.99388 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80522 * 359.97438 * 4 3 2 6 6 C 1.31882 * 121.80469 * 179.97438 * 5 4 3 7 7 C 1.38358 * 121.18269 * 359.97438 * 6 5 4 8 8 C 1.38335 * 119.46076 * 0.02562 * 7 6 5 9 9 C 1.39988 * 118.34916 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.60096 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00281 * 143.78135 * 10 9 8 12 12 N 1.34777 * 119.99742 * 323.78780 * 10 9 8 13 13 C 1.46932 * 120.63151 * 5.28089 * 12 10 9 14 14 C 1.52764 * 109.00898 * 233.58586 * 13 12 10 15 15 C 1.53045 * 109.38004 * 305.58510 * 14 13 12 16 16 C 1.53042 * 109.53555 * 61.24096 * 15 14 13 17 17 C 1.46925 * 120.62969 * 185.56195 * 12 10 9 18 18 H 1.09007 * 109.58399 * 246.29756 * 17 12 10 19 19 C 1.52997 * 109.58699 * 6.58017 * 17 12 10 20 20 N 1.46499 * 109.46988 * 178.96778 * 19 17 12 21 21 C 1.46502 * 119.99826 * 85.76324 * 20 19 17 22 22 C 1.36934 * 120.00253 * 265.76348 * 20 19 17 23 23 H 1.07999 * 119.99653 * 317.71368 * 22 20 19 24 24 C 1.38804 * 120.00338 * 137.71327 * 22 20 19 25 25 N 1.31622 * 120.00571 * 165.84909 * 24 22 20 26 26 Si 1.86806 * 120.00036 * 345.84892 * 24 22 20 27 27 H 1.48502 * 109.47063 * 84.59084 * 26 24 22 28 28 H 1.48498 * 109.47268 * 204.59030 * 26 24 22 29 29 H 1.48499 * 109.46720 * 324.59355 * 26 24 22 30 30 H 1.09001 * 109.47027 * 60.00122 * 1 2 3 31 31 H 1.09003 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47046 * 299.99955 * 1 2 3 33 33 H 1.08999 * 109.47046 * 240.00045 * 2 1 3 34 34 H 1.08998 * 109.47077 * 120.00399 * 2 1 3 35 35 H 1.07997 * 119.41179 * 180.02562 * 6 5 4 36 36 H 1.08004 * 120.26972 * 179.73741 * 7 6 5 37 37 H 1.08004 * 120.82982 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.58621 * 353.41783 * 13 12 10 39 39 H 1.08999 * 109.58690 * 113.84158 * 13 12 10 40 40 H 1.08989 * 109.56234 * 185.55330 * 14 13 12 41 41 H 1.08998 * 109.36001 * 65.49839 * 14 13 12 42 42 H 1.08994 * 109.46281 * 301.22084 * 15 14 13 43 43 H 1.09001 * 109.44389 * 181.25098 * 15 14 13 44 44 H 1.09003 * 109.49549 * 178.67858 * 16 15 14 45 45 H 1.09007 * 109.49820 * 58.58441 * 16 15 14 46 46 H 1.09001 * 109.47062 * 298.96628 * 19 17 12 47 47 H 1.08997 * 109.46960 * 58.96762 * 19 17 12 48 48 H 1.09004 * 109.47229 * 55.48629 * 21 20 19 49 49 H 1.09002 * 109.47522 * 175.48280 * 21 20 19 50 50 H 1.08996 * 109.47531 * 295.48449 * 21 20 19 51 51 H 0.96994 * 120.00290 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4635 0.6003 -0.0015 7 6 6.0625 1.8474 -0.0032 8 6 5.2714 2.9822 -0.0033 9 6 3.8806 2.8229 -0.0011 10 6 2.9900 3.9990 -0.0016 11 8 1.9449 3.9699 -0.6223 12 7 3.3350 5.1058 0.6858 13 6 4.6448 5.1999 1.3448 14 6 4.4374 5.5583 2.8152 15 6 3.5912 6.8298 2.9135 16 6 2.2215 6.5834 2.2767 17 6 2.4059 6.2387 0.7956 18 1 2.8150 7.0993 0.2662 19 6 1.0559 5.8559 0.1860 20 7 0.1241 6.9785 0.3189 21 6 0.1042 8.0376 -0.6931 22 6 -0.7281 7.0380 1.3891 23 1 -1.2370 6.1464 1.7243 24 6 -0.9380 8.2442 2.0430 25 7 -1.9473 8.3734 2.8779 26 14 0.2120 9.6844 1.7382 27 1 -0.2261 10.4195 0.5245 28 1 0.1818 10.5983 2.9083 29 1 1.5946 9.1802 1.5394 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 6.0820 -0.2851 -0.0019 36 1 7.1391 1.9343 0.0003 37 1 5.7156 3.9667 -0.0041 38 1 5.1597 4.2418 1.2728 39 1 5.2413 5.9747 0.8633 40 1 5.4040 5.7272 3.2896 41 1 3.9231 4.7392 3.3178 42 1 4.0944 7.6423 2.3896 43 1 3.4612 7.0990 3.9617 44 1 1.6110 7.4818 2.3680 45 1 1.7280 5.7545 2.7844 46 1 1.1883 5.6166 -0.8691 47 1 0.6548 4.9871 0.7080 48 1 -0.0595 7.5972 -1.6767 49 1 -0.7007 8.7381 -0.4703 50 1 1.0577 8.5655 -0.6855 51 1 -2.0937 9.2162 3.3352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158806335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:13 Heat of formation + Delta-G solvation = 25.847647 kcal Electronic energy + Delta-G solvation = -32845.304525 eV Core-core repulsion = 28747.578584 eV Total energy + Delta-G solvation = -4097.725942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23172 -39.76874 -38.15860 -37.03819 -35.71686 -33.53230 -32.30835 -32.13467 -31.62398 -30.65883 -29.99618 -26.98990 -25.83863 -25.12068 -24.29454 -23.92795 -22.55391 -22.20958 -20.87430 -20.28756 -19.22737 -18.48320 -17.13763 -16.91876 -16.74829 -16.39465 -15.60372 -15.49793 -15.06021 -14.84924 -14.55087 -14.37393 -13.99792 -13.91416 -13.86983 -13.44929 -13.36180 -12.97588 -12.77226 -12.75375 -12.62708 -12.43248 -12.41999 -12.20946 -12.08420 -11.57260 -11.51659 -11.29689 -11.02266 -10.86231 -10.69904 -10.56118 -10.32908 -10.18623 -10.03111 -10.00906 -9.88550 -9.78470 -9.42743 -8.96313 -8.67910 -8.37967 -8.15799 -6.59849 -5.90397 -3.39624 0.59347 1.00472 2.83657 2.97168 3.16734 3.35207 3.46715 3.49997 3.63883 4.02094 4.47281 4.53826 4.56405 4.72538 4.83924 4.88166 4.96849 5.02550 5.06202 5.11178 5.25752 5.30144 5.33340 5.43238 5.45215 5.58365 5.60115 5.60356 5.61749 5.77550 5.83101 5.90990 5.98057 6.05007 6.06450 6.15412 6.20474 6.25503 6.44882 6.49669 6.54471 6.68314 6.84278 6.85646 6.97629 7.14993 7.18736 7.35990 7.54406 7.72789 8.18566 8.44239 8.58386 9.10893 9.79523 10.24899 11.25738 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.003882 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.636746 B = 7210.428006 C = 8466.196177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.276 6.276 4 C 0.372 3.628 5 N -0.545 5.545 6 C 0.158 3.842 7 C -0.224 4.224 8 C -0.026 4.026 9 C -0.199 4.199 10 C 0.562 3.438 11 O -0.503 6.503 12 N -0.599 5.599 13 C 0.079 3.921 14 C -0.133 4.133 15 C -0.123 4.123 16 C -0.125 4.125 17 C 0.127 3.873 18 H 0.059 0.941 19 C 0.159 3.841 20 N -0.612 5.612 21 C 0.107 3.893 22 C -0.257 4.257 23 H 0.077 0.923 24 C 0.033 3.967 25 N -0.910 5.910 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.304 1.304 29 H -0.263 1.263 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.020 0.980 49 H 0.060 0.940 50 H 0.006 0.994 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.377 -14.204 -3.966 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 O -0.181 6.181 4 C 0.192 3.808 5 N -0.270 5.270 6 C 0.001 3.999 7 C -0.244 4.244 8 C -0.051 4.051 9 C -0.205 4.205 10 C 0.349 3.651 11 O -0.378 6.378 12 N -0.333 5.333 13 C -0.044 4.044 14 C -0.171 4.171 15 C -0.161 4.161 16 C -0.162 4.162 17 C 0.023 3.977 18 H 0.077 0.923 19 C 0.033 3.967 20 N -0.336 5.336 21 C -0.038 4.038 22 C -0.386 4.386 23 H 0.094 0.906 24 C -0.166 4.166 25 N -0.553 5.553 26 Si 0.709 3.291 27 H -0.214 1.214 28 H -0.232 1.232 29 H -0.188 1.188 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.176 0.824 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.038 0.962 49 H 0.079 0.921 50 H 0.024 0.976 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.024 -14.743 -4.204 23.662 hybrid contribution 1.302 1.640 0.187 2.102 sum 19.326 -13.103 -4.017 23.692 Atomic orbital electron populations 1.21814 0.92616 1.02562 1.04161 1.22677 0.95347 0.80874 1.02080 1.86468 1.15625 1.30348 1.85618 1.19749 0.84666 0.88315 0.88081 1.67468 1.06598 1.32450 1.20470 1.22598 0.89204 0.97555 0.90545 1.21914 1.01538 0.92992 1.07978 1.22004 0.91419 1.00391 0.91318 1.20144 0.94469 0.92976 1.12951 1.17791 0.85569 0.81755 0.79988 1.90875 1.23567 1.81083 1.42306 1.48257 1.16977 1.16626 1.51430 1.22442 0.85640 1.02561 0.93727 1.21834 1.00290 0.99223 0.95737 1.21598 0.97035 0.96515 1.00971 1.22016 0.95621 1.04417 0.94182 1.22363 0.91684 0.86460 0.97221 0.92295 1.21655 0.85669 0.89750 0.99633 1.44392 1.40352 1.24710 1.24165 1.21357 0.98302 0.92129 0.91998 1.18854 1.17632 0.96694 1.05456 0.90576 1.25655 0.97158 0.98046 0.95773 1.69798 1.28944 1.25721 1.30801 0.87062 0.83112 0.82761 0.76174 1.21365 1.23210 1.18839 0.91229 0.90462 0.91298 0.91686 0.91752 0.82102 0.84016 0.82421 0.88364 0.91390 0.91355 0.91600 0.92552 0.92069 0.88294 0.91759 0.91087 0.92032 0.96166 0.92113 0.97630 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 37.16 0.38 -1.32 16 2 C 0.07 0.80 6.03 37.16 0.22 1.02 16 3 O -0.28 -4.42 8.80 -35.16 -0.31 -4.73 16 4 C 0.37 5.42 7.48 -16.61 -0.12 5.30 16 5 N -0.55 -6.63 9.21 -12.98 -0.12 -6.74 16 6 C 0.16 1.37 11.17 -17.49 -0.20 1.17 16 7 C -0.22 -1.70 10.09 -39.50 -0.40 -2.10 16 8 C -0.03 -0.26 7.57 -38.89 -0.29 -0.55 16 9 C -0.20 -2.79 5.52 -104.69 -0.58 -3.37 16 10 C 0.56 9.70 7.12 -12.47 -0.09 9.61 16 11 O -0.50 -10.49 11.56 -11.90 -0.14 -10.63 16 12 N -0.60 -9.65 2.98 -166.70 -0.50 -10.15 16 13 C 0.08 0.93 5.07 -3.93 -0.02 0.91 16 14 C -0.13 -1.62 6.07 -26.83 -0.16 -1.78 16 15 C -0.12 -1.90 5.89 -26.69 -0.16 -2.05 16 16 C -0.12 -2.47 4.62 -26.61 -0.12 -2.59 16 17 C 0.13 2.46 3.21 -67.60 -0.22 2.25 16 18 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.60 3.67 -4.04 -0.01 3.58 16 20 N -0.61 -15.33 2.15 -181.12 -0.39 -15.72 16 21 C 0.11 2.47 8.54 59.85 0.51 2.99 16 22 C -0.26 -7.33 8.53 -15.06 -0.13 -7.46 16 23 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 24 C 0.03 0.96 5.08 -17.43 -0.09 0.87 16 25 N -0.91 -28.10 13.97 55.49 0.78 -27.32 16 26 Si 0.88 22.20 22.84 -169.99 -3.88 18.32 16 27 H -0.29 -7.13 6.63 56.52 0.37 -6.75 16 28 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 29 H -0.26 -6.28 6.10 56.52 0.34 -5.94 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.16 1.21 5.57 -52.48 -0.29 0.92 16 38 H 0.10 0.94 3.45 -52.52 -0.18 0.76 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 2.29 3.42 -51.93 -0.18 2.12 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.07 1.64 6.13 -51.93 -0.32 1.32 16 47 H 0.06 1.53 7.16 -51.93 -0.37 1.16 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.48 5.61 -51.93 -0.29 1.19 16 50 H 0.01 0.12 7.24 -51.93 -0.38 -0.25 16 51 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -34.36 384.09 -8.23 -42.59 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.99 Total: 2.13 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.47 Total: 6.46 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.23 Total: -59.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.45 Total: -15.35 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -3.88 Total: 18.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.36 -8.23 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158806335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds