Wall clock time and date at job start Wed Apr 1 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46767 * 2 1 4 4 C 1.35424 * 116.99388 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80522 * 359.97438 * 4 3 2 6 6 C 1.31882 * 121.80469 * 179.97438 * 5 4 3 7 7 C 1.38358 * 121.18269 * 359.97438 * 6 5 4 8 8 C 1.38335 * 119.46076 * 0.02562 * 7 6 5 9 9 C 1.39988 * 118.34916 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.60096 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00281 * 143.78135 * 10 9 8 12 12 N 1.34777 * 119.99742 * 323.78780 * 10 9 8 13 13 C 1.46932 * 120.63151 * 5.28089 * 12 10 9 14 14 C 1.52764 * 109.00898 * 233.58586 * 13 12 10 15 15 C 1.53045 * 109.38004 * 305.58510 * 14 13 12 16 16 C 1.53042 * 109.53555 * 61.24096 * 15 14 13 17 17 C 1.46925 * 120.62969 * 185.56195 * 12 10 9 18 18 H 1.09007 * 109.58399 * 246.29756 * 17 12 10 19 19 C 1.52997 * 109.58699 * 6.58017 * 17 12 10 20 20 N 1.46499 * 109.46988 * 178.96778 * 19 17 12 21 21 C 1.46502 * 119.99826 * 85.76324 * 20 19 17 22 22 C 1.36934 * 120.00253 * 265.76348 * 20 19 17 23 23 H 1.07999 * 119.99653 * 317.71368 * 22 20 19 24 24 C 1.38804 * 120.00338 * 137.71327 * 22 20 19 25 25 N 1.31622 * 120.00571 * 165.84909 * 24 22 20 26 26 Si 1.86806 * 120.00036 * 345.84892 * 24 22 20 27 27 H 1.48502 * 109.47063 * 84.59084 * 26 24 22 28 28 H 1.48498 * 109.47268 * 204.59030 * 26 24 22 29 29 H 1.48499 * 109.46720 * 324.59355 * 26 24 22 30 30 H 1.09001 * 109.47027 * 60.00122 * 1 2 3 31 31 H 1.09003 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47046 * 299.99955 * 1 2 3 33 33 H 1.08999 * 109.47046 * 240.00045 * 2 1 3 34 34 H 1.08998 * 109.47077 * 120.00399 * 2 1 3 35 35 H 1.07997 * 119.41179 * 180.02562 * 6 5 4 36 36 H 1.08004 * 120.26972 * 179.73741 * 7 6 5 37 37 H 1.08004 * 120.82982 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.58621 * 353.41783 * 13 12 10 39 39 H 1.08999 * 109.58690 * 113.84158 * 13 12 10 40 40 H 1.08989 * 109.56234 * 185.55330 * 14 13 12 41 41 H 1.08998 * 109.36001 * 65.49839 * 14 13 12 42 42 H 1.08994 * 109.46281 * 301.22084 * 15 14 13 43 43 H 1.09001 * 109.44389 * 181.25098 * 15 14 13 44 44 H 1.09003 * 109.49549 * 178.67858 * 16 15 14 45 45 H 1.09007 * 109.49820 * 58.58441 * 16 15 14 46 46 H 1.09001 * 109.47062 * 298.96628 * 19 17 12 47 47 H 1.08997 * 109.46960 * 58.96762 * 19 17 12 48 48 H 1.09004 * 109.47229 * 55.48629 * 21 20 19 49 49 H 1.09002 * 109.47522 * 175.48280 * 21 20 19 50 50 H 1.08996 * 109.47531 * 295.48449 * 21 20 19 51 51 H 0.96994 * 120.00290 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4635 0.6003 -0.0015 7 6 6.0625 1.8474 -0.0032 8 6 5.2714 2.9822 -0.0033 9 6 3.8806 2.8229 -0.0011 10 6 2.9900 3.9990 -0.0016 11 8 1.9449 3.9699 -0.6223 12 7 3.3350 5.1058 0.6858 13 6 4.6448 5.1999 1.3448 14 6 4.4374 5.5583 2.8152 15 6 3.5912 6.8298 2.9135 16 6 2.2215 6.5834 2.2767 17 6 2.4059 6.2387 0.7956 18 1 2.8150 7.0993 0.2662 19 6 1.0559 5.8559 0.1860 20 7 0.1241 6.9785 0.3189 21 6 0.1042 8.0376 -0.6931 22 6 -0.7281 7.0380 1.3891 23 1 -1.2370 6.1464 1.7243 24 6 -0.9380 8.2442 2.0430 25 7 -1.9473 8.3734 2.8779 26 14 0.2120 9.6844 1.7382 27 1 -0.2261 10.4195 0.5245 28 1 0.1818 10.5983 2.9083 29 1 1.5946 9.1802 1.5394 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 6.0820 -0.2851 -0.0019 36 1 7.1391 1.9343 0.0003 37 1 5.7156 3.9667 -0.0041 38 1 5.1597 4.2418 1.2728 39 1 5.2413 5.9747 0.8633 40 1 5.4040 5.7272 3.2896 41 1 3.9231 4.7392 3.3178 42 1 4.0944 7.6423 2.3896 43 1 3.4612 7.0990 3.9617 44 1 1.6110 7.4818 2.3680 45 1 1.7280 5.7545 2.7844 46 1 1.1883 5.6166 -0.8691 47 1 0.6548 4.9871 0.7080 48 1 -0.0595 7.5972 -1.6767 49 1 -0.7007 8.7381 -0.4703 50 1 1.0577 8.5655 -0.6855 51 1 -2.0937 9.2162 3.3352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158806335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:12 Heat of formation + Delta-G solvation = 1.245507 kcal Electronic energy + Delta-G solvation = -32846.371354 eV Core-core repulsion = 28747.578584 eV Total energy + Delta-G solvation = -4098.792771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.25138 -40.95796 -39.10414 -38.43158 -37.49802 -34.70836 -33.92935 -33.22836 -33.03363 -32.06729 -30.93995 -28.51291 -27.87314 -26.39739 -25.31731 -24.95856 -23.92936 -23.28928 -22.25958 -21.78945 -20.49837 -19.44757 -18.94196 -18.17788 -17.93577 -17.38993 -17.05716 -16.90996 -16.43431 -16.11447 -15.89295 -15.56106 -15.28477 -15.12998 -14.96554 -14.78705 -14.69599 -14.44209 -14.28486 -14.12003 -14.01682 -13.84863 -13.53702 -13.38203 -13.34719 -13.08705 -12.89350 -12.59708 -12.50762 -12.19890 -12.04906 -11.97133 -11.88578 -11.80413 -11.76892 -11.58776 -11.23274 -10.93017 -10.82884 -10.67156 -10.12529 -9.63767 -9.42196 -8.66707 -8.18162 -5.68068 -0.24664 0.22990 1.32740 1.37829 1.50692 1.69829 2.00505 2.02334 2.41969 2.75236 3.10645 3.20062 3.42778 3.59149 3.78686 3.87681 3.90657 3.95492 4.01115 4.05289 4.10804 4.12333 4.23049 4.34239 4.35592 4.41656 4.52141 4.56087 4.59988 4.65380 4.73657 4.75722 4.80687 4.85834 4.89511 4.95406 4.97851 5.02267 5.08704 5.10616 5.14222 5.17859 5.30005 5.35593 5.46798 5.52111 5.71136 5.95761 6.16054 6.24210 6.46696 6.77529 6.96656 7.22709 7.60797 8.05620 9.01905 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.003882 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.636746 B = 7210.428006 C = 8466.196177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.316 6.316 4 C 0.343 3.657 5 N -0.559 5.559 6 C 0.157 3.843 7 C -0.198 4.198 8 C -0.021 4.021 9 C -0.227 4.227 10 C 0.555 3.445 11 O -0.557 6.557 12 N -0.599 5.599 13 C 0.073 3.927 14 C -0.127 4.127 15 C -0.120 4.120 16 C -0.122 4.122 17 C 0.138 3.862 18 H 0.069 0.931 19 C 0.173 3.827 20 N -0.623 5.623 21 C 0.107 3.893 22 C -0.251 4.251 23 H 0.021 0.979 24 C -0.015 4.015 25 N -0.959 5.959 26 Si 0.945 3.055 27 H -0.273 1.273 28 H -0.307 1.307 29 H -0.238 1.238 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.203 0.797 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.038 0.962 49 H 0.046 0.954 50 H 0.030 0.970 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.570 -14.179 -4.656 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.222 6.222 4 C 0.165 3.835 5 N -0.283 5.283 6 C 0.000 4.000 7 C -0.218 4.218 8 C -0.046 4.046 9 C -0.234 4.234 10 C 0.344 3.656 11 O -0.436 6.436 12 N -0.332 5.332 13 C -0.047 4.047 14 C -0.165 4.165 15 C -0.158 4.158 16 C -0.160 4.160 17 C 0.033 3.967 18 H 0.087 0.913 19 C 0.048 3.952 20 N -0.349 5.349 21 C -0.038 4.038 22 C -0.381 4.381 23 H 0.039 0.961 24 C -0.210 4.210 25 N -0.604 5.604 26 Si 0.771 3.229 27 H -0.200 1.200 28 H -0.236 1.236 29 H -0.162 1.162 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.219 0.781 36 H 0.209 0.791 37 H 0.203 0.797 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.048 0.952 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.287 -14.744 -4.904 28.832 hybrid contribution -0.599 1.412 0.378 1.580 sum 23.688 -13.333 -4.525 27.556 Atomic orbital electron populations 1.21838 0.92448 1.04103 1.02409 1.22785 0.95511 0.79996 1.02657 1.86426 1.17431 1.32084 1.86293 1.19980 0.84401 0.89323 0.89829 1.67518 1.08222 1.31622 1.20954 1.23476 0.88185 0.99967 0.88335 1.22442 1.03621 0.91335 1.04389 1.22344 0.89344 1.02702 0.90204 1.19998 0.95928 0.91083 1.16342 1.18400 0.85432 0.82663 0.79072 1.90827 1.26065 1.81996 1.44679 1.48245 1.18106 1.15334 1.51533 1.22875 0.83500 1.05251 0.93104 1.21834 1.01501 0.96746 0.96379 1.21589 0.94546 0.98907 1.00753 1.21886 0.98057 1.01369 0.94720 1.21837 0.90503 0.87839 0.96513 0.91325 1.21388 0.87233 0.87503 0.99082 1.44443 1.40884 1.25793 1.23828 1.21414 0.98924 0.91414 0.92014 1.18486 1.17742 0.95114 1.06750 0.96077 1.26253 0.98282 1.01039 0.95463 1.69954 1.30952 1.26798 1.32661 0.85991 0.81969 0.78672 0.76225 1.19958 1.23566 1.16161 0.92789 0.87210 0.93142 0.90946 0.91047 0.78062 0.79090 0.79677 0.85616 0.88196 0.86925 0.93316 0.90844 0.91826 0.91676 0.95198 0.91487 0.96110 0.94374 0.93557 0.95183 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 10.28 71.98 0.74 -2.90 16 2 C 0.07 1.69 6.03 71.98 0.43 2.12 16 3 O -0.32 -10.93 8.80 -70.76 -0.62 -11.55 16 4 C 0.34 10.11 7.48 85.13 0.64 10.74 16 5 N -0.56 -12.64 9.21 -308.00 -2.84 -15.47 16 6 C 0.16 2.02 11.17 84.71 0.95 2.96 16 7 C -0.20 -1.84 10.09 22.32 0.23 -1.62 16 8 C -0.02 -0.32 7.57 22.72 0.17 -0.15 16 9 C -0.23 -6.18 5.52 -19.91 -0.11 -6.29 16 10 C 0.56 19.61 7.12 86.69 0.62 20.23 16 11 O -0.56 -24.96 11.56 12.44 0.14 -24.82 16 12 N -0.60 -18.81 2.98 -799.57 -2.38 -21.19 16 13 C 0.07 1.41 5.07 86.22 0.44 1.85 16 14 C -0.13 -2.63 6.07 30.53 0.19 -2.44 16 15 C -0.12 -3.41 5.89 30.62 0.18 -3.23 16 16 C -0.12 -4.93 4.62 30.67 0.14 -4.79 16 17 C 0.14 5.39 3.21 44.97 0.14 5.53 16 18 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 19 C 0.17 8.31 3.67 86.38 0.32 8.63 16 20 N -0.62 -32.63 2.15 -726.95 -1.56 -34.19 16 21 C 0.11 4.89 8.54 127.77 1.09 5.98 16 22 C -0.25 -15.31 8.53 84.03 0.72 -14.60 16 23 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 24 C -0.01 -0.89 5.08 84.86 0.43 -0.45 16 25 N -0.96 -62.23 13.97 21.65 0.30 -61.92 16 26 Si 0.94 46.43 22.84 68.60 1.57 48.00 16 27 H -0.27 -12.82 6.63 99.48 0.66 -12.16 16 28 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 29 H -0.24 -10.64 6.10 99.48 0.61 -10.03 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 37 H 0.19 1.73 5.57 -2.91 -0.02 1.71 16 38 H 0.13 1.77 3.45 -2.94 -0.01 1.76 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.06 3.06 3.42 -2.39 -0.01 3.05 16 45 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.07 3.28 6.13 -2.39 -0.01 3.26 16 47 H 0.02 1.14 7.16 -2.39 -0.02 1.12 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.05 2.23 5.61 -2.39 -0.01 2.22 16 50 H 0.03 1.24 7.24 -2.39 -0.02 1.22 16 51 H 0.26 16.10 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -86.10 384.09 2.70 -83.40 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.78 Total: 16.19 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 7.31 Total: 21.57 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -6.47 Total: -132.78 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.48 Total: -36.37 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.57 Total: 48.00 kcal Total: -86.10 2.70 -83.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158806335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.643 kcal (2) G-P(sol) polarization free energy of solvation -86.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds