Wall clock time and date at job start Wed Apr 1 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 119.99474 * 2 1 4 4 N 1.34767 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99759 * 355.31480 * 4 2 1 6 6 C 1.46502 * 120.00356 * 175.31515 * 4 2 1 7 7 C 1.50706 * 109.47105 * 89.99708 * 6 4 2 8 8 O 1.21280 * 119.99797 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99754 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00006 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47386 * 270.00316 * 10 9 7 12 12 N 1.46501 * 109.47009 * 179.97438 * 11 10 9 13 13 C 1.36937 * 119.99712 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00336 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99992 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46837 * 120.00229 * 17 15 13 20 20 H 1.48502 * 109.47233 * 239.99772 * 17 15 13 21 21 C 1.46506 * 120.00380 * 0.02562 * 9 7 6 22 22 C 1.52995 * 109.47099 * 89.99442 * 21 9 7 23 23 C 1.50699 * 109.47201 * 180.02562 * 22 21 9 24 24 C 1.38239 * 120.00153 * 90.00011 * 23 22 21 25 25 C 1.38234 * 120.00013 * 179.97438 * 24 23 22 26 26 C 1.38229 * 120.00054 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00282 * 0.27329 * 26 25 24 28 28 C 1.38239 * 119.99872 * 359.51596 * 27 26 25 29 29 H 1.09001 * 109.47111 * 185.20789 * 1 2 3 30 30 H 1.08993 * 109.47755 * 305.21279 * 1 2 3 31 31 H 1.09007 * 109.46734 * 65.21421 * 1 2 3 32 32 H 1.08998 * 109.47293 * 275.45716 * 5 4 2 33 33 H 1.08990 * 109.47248 * 35.46352 * 5 4 2 34 34 H 1.09008 * 109.46955 * 155.46535 * 5 4 2 35 35 H 1.09000 * 109.46977 * 329.99838 * 6 4 2 36 36 H 1.09001 * 109.47150 * 210.00139 * 6 4 2 37 37 H 1.09002 * 109.47175 * 30.00623 * 10 9 7 38 38 H 1.09002 * 109.47214 * 149.99897 * 10 9 7 39 39 H 1.08994 * 109.47616 * 299.99770 * 11 10 9 40 40 H 1.09004 * 109.46848 * 60.00258 * 11 10 9 41 41 H 0.96997 * 120.00403 * 0.02562 * 12 11 10 42 42 H 0.97005 * 119.99649 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.46876 * 329.99819 * 21 9 7 44 44 H 1.08994 * 109.47028 * 210.00047 * 21 9 7 45 45 H 1.09000 * 109.46948 * 60.00422 * 22 21 9 46 46 H 1.09002 * 109.47534 * 299.99930 * 22 21 9 47 47 H 1.08005 * 119.99474 * 359.97438 * 24 23 22 48 48 H 1.07998 * 119.99521 * 180.02562 * 25 24 23 49 49 H 1.08004 * 119.99928 * 180.02562 * 26 25 24 50 50 H 1.07997 * 119.99869 * 179.72422 * 27 26 25 51 51 H 1.07989 * 120.00069 * 180.27173 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4521 -2.4337 0.1047 6 6 3.6422 -1.1692 -0.1031 7 6 4.2438 -1.1113 1.2775 8 8 3.5229 -1.0725 2.2519 9 7 5.5830 -1.1036 1.4292 10 6 6.1678 -1.0478 2.7711 11 6 6.3698 0.4129 3.1792 12 7 6.9541 0.4686 4.5215 13 6 7.2265 1.6796 5.0999 14 1 7.0102 2.5936 4.5667 15 6 7.7806 1.7325 6.3715 16 7 8.0447 0.6186 7.0211 17 14 8.1515 3.3844 7.1608 18 1 7.7644 4.4754 6.2308 19 1 7.3805 3.5139 8.4233 20 1 9.6039 3.4770 7.4560 21 6 6.4539 -1.1510 0.2520 22 6 6.7554 0.2737 -0.2171 23 6 7.6507 0.2249 -1.4283 24 6 7.0984 0.1724 -2.6944 25 6 7.9197 0.1281 -3.8055 26 6 9.2932 0.1370 -3.6504 27 6 9.8456 0.1844 -2.3841 28 6 9.0243 0.2330 -1.2732 29 1 -0.3633 -1.0234 0.0933 30 1 -0.3634 0.5925 0.8395 31 1 -0.3633 0.4309 -0.9331 32 1 1.2592 -2.6567 1.1541 33 1 0.5055 -2.3533 -0.4296 34 1 2.0495 -3.2337 -0.3327 35 1 3.9670 -0.3018 -0.6777 36 1 3.9696 -2.0802 -0.6042 37 1 5.4975 -1.5337 3.4801 38 1 7.1294 -1.5610 2.7701 39 1 7.0401 0.8989 2.4703 40 1 5.4081 0.9261 3.1803 41 1 7.1487 -0.3522 5.0002 42 1 8.4315 0.6556 7.9099 43 1 5.9547 -1.6987 -0.5473 44 1 7.3860 -1.6536 0.5098 45 1 7.2545 0.8214 0.5823 46 1 5.8231 0.7763 -0.4749 47 1 6.0252 0.1658 -2.8155 48 1 7.4881 0.0875 -4.7946 49 1 9.9349 0.1029 -4.5185 50 1 10.9187 0.1869 -2.2628 51 1 9.4558 0.2745 -0.2841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162701899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:35 Heat of formation + Delta-G solvation = -22.213408 kcal Electronic energy + Delta-G solvation = -30844.095133 eV Core-core repulsion = 26744.285108 eV Total energy + Delta-G solvation = -4099.810026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.51856 -39.53558 -39.00582 -36.34714 -35.51584 -34.61567 -32.96631 -31.54586 -31.01947 -30.78609 -28.91648 -28.40345 -27.29326 -26.02454 -23.98268 -23.53423 -22.70212 -21.66901 -20.92315 -19.95090 -18.91387 -17.49251 -17.30594 -17.08597 -16.83852 -16.53316 -15.68785 -15.44937 -15.24837 -15.18887 -14.85875 -14.45837 -13.86361 -13.71763 -13.58015 -13.52409 -13.41875 -13.38325 -13.21944 -13.18847 -13.10923 -12.99381 -12.54023 -12.48984 -12.27630 -12.15597 -11.84486 -11.45119 -11.23526 -11.17180 -11.01737 -10.86983 -10.82486 -10.53396 -10.05166 -9.99925 -9.95710 -9.69049 -9.05901 -8.97589 -8.82325 -8.80448 -8.44216 -6.87714 -5.71854 -3.00490 1.19950 1.26379 2.41059 2.70684 2.72720 3.19175 3.47543 3.53474 3.56028 3.64852 4.39623 4.42254 4.62593 4.66726 4.74269 4.76828 4.82746 4.87463 4.89013 4.95711 5.01495 5.11825 5.15636 5.18774 5.25791 5.31754 5.39100 5.39980 5.47442 5.54240 5.65090 5.65768 5.68433 5.80514 5.85603 5.93792 6.01750 6.08870 6.11268 6.21514 6.32190 6.37916 6.50477 6.63395 6.82164 6.87889 6.97662 7.12731 7.48909 7.76358 8.01197 8.30193 8.46945 9.57955 10.14166 10.49393 11.51223 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005959 B = 0.003674 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4697.279210 B = 7618.833990 C =11166.343359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.516 3.484 3 O -0.538 6.538 4 N -0.604 5.604 5 C 0.078 3.922 6 C 0.097 3.903 7 C 0.496 3.504 8 O -0.521 6.521 9 N -0.607 5.607 10 C 0.109 3.891 11 C 0.142 3.858 12 N -0.730 5.730 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.118 3.882 22 C -0.110 4.110 23 C -0.075 4.075 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 -9.917 -25.981 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.414 6.414 4 N -0.338 5.338 5 C -0.064 4.064 6 C -0.029 4.029 7 C 0.282 3.718 8 O -0.396 6.396 9 N -0.341 5.341 10 C -0.014 4.014 11 C 0.014 3.986 12 N -0.375 5.375 13 C -0.366 4.366 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.006 4.006 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.130 4.130 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.903 -9.168 -25.418 28.153 hybrid contribution 0.485 0.614 0.671 1.031 sum -7.418 -8.553 -24.746 27.214 Atomic orbital electron populations 1.21963 0.91506 1.04667 1.05222 1.20823 0.90752 0.82908 0.75024 1.90750 1.70583 1.31033 1.49006 1.47492 1.05401 1.07160 1.73719 1.21903 0.97096 0.84814 1.02635 1.21414 0.81185 1.05023 0.95324 1.21076 0.82210 0.76582 0.91909 1.90727 1.59782 1.48188 1.40914 1.47959 1.05326 1.73342 1.07442 1.21725 0.98407 0.99080 0.82177 1.20982 0.96363 0.92962 0.88326 1.42221 1.75097 1.06454 1.13715 1.19263 1.33672 0.85654 0.98007 0.91179 1.24730 1.02065 0.96984 0.97229 1.69676 1.49890 1.25114 1.13639 0.86108 0.77521 0.83329 0.79238 1.20531 1.21833 1.21855 1.21594 0.95399 0.96252 0.87335 1.21233 0.99621 0.98069 0.95885 1.19825 0.94032 0.99260 0.94430 1.21067 0.99748 1.00724 0.92063 1.21112 0.93768 1.00488 0.98524 1.21135 0.95176 1.00961 0.97277 1.21176 0.99865 0.99935 0.92623 1.21195 0.93055 0.99553 0.99240 0.90024 0.88582 0.88829 0.91865 0.90540 0.90917 0.87109 0.87756 0.89806 0.90481 0.96199 0.95968 0.78336 0.93603 0.90602 0.89648 0.89161 0.90472 0.86200 0.86294 0.86380 0.86104 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.01 36.00 0.36 -1.06 16 2 C 0.52 6.64 7.77 -10.99 -0.09 6.55 16 3 O -0.54 -9.46 16.73 5.55 0.09 -9.37 16 4 N -0.60 -6.58 2.36 -182.95 -0.43 -7.02 16 5 C 0.08 0.54 10.01 59.85 0.60 1.14 16 6 C 0.10 1.06 4.45 -5.19 -0.02 1.04 16 7 C 0.50 7.61 7.74 -10.99 -0.09 7.52 16 8 O -0.52 -10.41 16.01 5.56 0.09 -10.32 16 9 N -0.61 -8.62 2.47 -173.69 -0.43 -9.05 16 10 C 0.11 1.91 5.56 -4.05 -0.02 1.88 16 11 C 0.14 3.12 6.58 -4.04 -0.03 3.10 16 12 N -0.73 -19.58 5.60 -59.91 -0.34 -19.91 16 13 C -0.23 -6.93 9.99 -15.06 -0.15 -7.08 16 14 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 16 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 17 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 C 0.12 1.22 5.24 -4.04 -0.02 1.20 16 22 C -0.11 -1.25 5.67 -27.89 -0.16 -1.40 16 23 C -0.07 -0.78 5.13 -104.62 -0.54 -1.32 16 24 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 25 C -0.12 -1.04 10.05 -39.59 -0.40 -1.43 16 26 C -0.13 -1.10 10.05 -39.59 -0.40 -1.50 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.11 -1.18 9.70 -39.58 -0.38 -1.57 16 29 H 0.08 0.44 5.49 -51.93 -0.29 0.16 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.32 6.14 -51.93 -0.32 0.00 16 34 H 0.07 0.36 7.83 -51.92 -0.41 -0.05 16 35 H 0.11 1.24 6.54 -51.93 -0.34 0.90 16 36 H 0.10 0.73 7.12 -51.93 -0.37 0.36 16 37 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 38 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 39 H 0.02 0.43 6.26 -51.93 -0.33 0.10 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 44 H 0.09 0.84 7.89 -51.93 -0.41 0.43 16 45 H 0.09 1.23 6.21 -51.93 -0.32 0.91 16 46 H 0.08 0.92 7.17 -51.93 -0.37 0.55 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 51 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 419.36 15.07 6.32 6.32 Total: -1.00 -39.16 419.36 -9.15 -48.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.94 Total: 7.54 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.21 Total: 3.57 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.47 Total: -64.32 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.68 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -39.16 -9.15 -48.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162701899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.093 kcal (2) G-P(sol) polarization free energy of solvation -39.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds