Wall clock time and date at job start Wed Apr 1 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 119.99474 * 2 1 4 4 N 1.34767 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99759 * 355.31480 * 4 2 1 6 6 C 1.46502 * 120.00356 * 175.31515 * 4 2 1 7 7 C 1.50706 * 109.47105 * 89.99708 * 6 4 2 8 8 O 1.21280 * 119.99797 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99754 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00006 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47386 * 270.00316 * 10 9 7 12 12 N 1.46501 * 109.47009 * 179.97438 * 11 10 9 13 13 C 1.36937 * 119.99712 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00336 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99992 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46837 * 120.00229 * 17 15 13 20 20 H 1.48502 * 109.47233 * 239.99772 * 17 15 13 21 21 C 1.46506 * 120.00380 * 0.02562 * 9 7 6 22 22 C 1.52995 * 109.47099 * 89.99442 * 21 9 7 23 23 C 1.50699 * 109.47201 * 180.02562 * 22 21 9 24 24 C 1.38239 * 120.00153 * 90.00011 * 23 22 21 25 25 C 1.38234 * 120.00013 * 179.97438 * 24 23 22 26 26 C 1.38229 * 120.00054 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00282 * 0.27329 * 26 25 24 28 28 C 1.38239 * 119.99872 * 359.51596 * 27 26 25 29 29 H 1.09001 * 109.47111 * 185.20789 * 1 2 3 30 30 H 1.08993 * 109.47755 * 305.21279 * 1 2 3 31 31 H 1.09007 * 109.46734 * 65.21421 * 1 2 3 32 32 H 1.08998 * 109.47293 * 275.45716 * 5 4 2 33 33 H 1.08990 * 109.47248 * 35.46352 * 5 4 2 34 34 H 1.09008 * 109.46955 * 155.46535 * 5 4 2 35 35 H 1.09000 * 109.46977 * 329.99838 * 6 4 2 36 36 H 1.09001 * 109.47150 * 210.00139 * 6 4 2 37 37 H 1.09002 * 109.47175 * 30.00623 * 10 9 7 38 38 H 1.09002 * 109.47214 * 149.99897 * 10 9 7 39 39 H 1.08994 * 109.47616 * 299.99770 * 11 10 9 40 40 H 1.09004 * 109.46848 * 60.00258 * 11 10 9 41 41 H 0.96997 * 120.00403 * 0.02562 * 12 11 10 42 42 H 0.97005 * 119.99649 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.46876 * 329.99819 * 21 9 7 44 44 H 1.08994 * 109.47028 * 210.00047 * 21 9 7 45 45 H 1.09000 * 109.46948 * 60.00422 * 22 21 9 46 46 H 1.09002 * 109.47534 * 299.99930 * 22 21 9 47 47 H 1.08005 * 119.99474 * 359.97438 * 24 23 22 48 48 H 1.07998 * 119.99521 * 180.02562 * 25 24 23 49 49 H 1.08004 * 119.99928 * 180.02562 * 26 25 24 50 50 H 1.07997 * 119.99869 * 179.72422 * 27 26 25 51 51 H 1.07989 * 120.00069 * 180.27173 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4521 -2.4337 0.1047 6 6 3.6422 -1.1692 -0.1031 7 6 4.2438 -1.1113 1.2775 8 8 3.5229 -1.0725 2.2519 9 7 5.5830 -1.1036 1.4292 10 6 6.1678 -1.0478 2.7711 11 6 6.3698 0.4129 3.1792 12 7 6.9541 0.4686 4.5215 13 6 7.2265 1.6796 5.0999 14 1 7.0102 2.5936 4.5667 15 6 7.7806 1.7325 6.3715 16 7 8.0447 0.6186 7.0211 17 14 8.1515 3.3844 7.1608 18 1 7.7644 4.4754 6.2308 19 1 7.3805 3.5139 8.4233 20 1 9.6039 3.4770 7.4560 21 6 6.4539 -1.1510 0.2520 22 6 6.7554 0.2737 -0.2171 23 6 7.6507 0.2249 -1.4283 24 6 7.0984 0.1724 -2.6944 25 6 7.9197 0.1281 -3.8055 26 6 9.2932 0.1370 -3.6504 27 6 9.8456 0.1844 -2.3841 28 6 9.0243 0.2330 -1.2732 29 1 -0.3633 -1.0234 0.0933 30 1 -0.3634 0.5925 0.8395 31 1 -0.3633 0.4309 -0.9331 32 1 1.2592 -2.6567 1.1541 33 1 0.5055 -2.3533 -0.4296 34 1 2.0495 -3.2337 -0.3327 35 1 3.9670 -0.3018 -0.6777 36 1 3.9696 -2.0802 -0.6042 37 1 5.4975 -1.5337 3.4801 38 1 7.1294 -1.5610 2.7701 39 1 7.0401 0.8989 2.4703 40 1 5.4081 0.9261 3.1803 41 1 7.1487 -0.3522 5.0002 42 1 8.4315 0.6556 7.9099 43 1 5.9547 -1.6987 -0.5473 44 1 7.3860 -1.6536 0.5098 45 1 7.2545 0.8214 0.5823 46 1 5.8231 0.7763 -0.4749 47 1 6.0252 0.1658 -2.8155 48 1 7.4881 0.0875 -4.7946 49 1 9.9349 0.1029 -4.5185 50 1 10.9187 0.1869 -2.2628 51 1 9.4558 0.2745 -0.2841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162701899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:34 Heat of formation + Delta-G solvation = -48.135360 kcal Electronic energy + Delta-G solvation = -30845.219193 eV Core-core repulsion = 26744.285108 eV Total energy + Delta-G solvation = -4100.934086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58890 -40.42285 -39.95560 -37.67243 -36.51600 -36.43274 -34.15114 -33.26317 -31.86040 -31.70177 -30.22655 -29.25263 -28.43831 -27.02600 -25.54123 -24.82000 -23.40043 -23.35445 -21.82032 -21.02750 -19.95664 -19.28087 -18.52942 -18.15264 -17.58948 -17.56401 -16.87077 -16.64943 -16.34328 -16.15844 -16.05572 -15.82530 -15.32815 -15.24897 -15.07014 -14.68454 -14.38611 -14.32632 -14.26679 -14.08536 -14.00225 -13.71358 -13.57133 -13.45833 -13.17598 -13.05124 -12.95807 -12.94180 -12.65722 -12.56781 -12.50027 -12.14660 -12.11436 -11.97968 -11.82289 -11.67447 -11.18275 -11.02120 -10.97024 -9.99533 -9.76390 -9.74906 -9.45779 -9.11182 -8.02680 -5.33510 0.47776 0.55945 1.39523 1.42438 1.43877 1.54161 1.55988 1.84547 2.16320 2.51474 2.92957 3.30042 3.42437 3.67567 3.77688 3.92756 4.05029 4.08189 4.09770 4.12479 4.20057 4.23817 4.26095 4.30376 4.36030 4.37392 4.40318 4.45737 4.54132 4.59836 4.61887 4.70185 4.70800 4.85018 4.92255 4.93772 5.02011 5.09556 5.10236 5.22862 5.27499 5.33659 5.37694 5.48865 5.63842 5.69098 5.77997 6.18004 6.19248 6.29597 6.33212 7.05554 7.14448 7.25370 7.95566 8.22778 9.20719 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005959 B = 0.003674 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4697.279210 B = 7618.833990 C =11166.343359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.599 6.599 4 N -0.604 5.604 5 C 0.071 3.929 6 C 0.100 3.900 7 C 0.488 3.512 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.124 3.876 11 C 0.151 3.849 12 N -0.741 5.741 13 C -0.253 4.253 14 H 0.067 0.933 15 C -0.068 4.068 16 N -0.965 5.965 17 Si 0.976 3.024 18 H -0.271 1.271 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.117 3.883 22 C -0.101 4.101 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.127 4.127 28 C -0.132 4.132 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.030 0.970 40 H -0.013 1.013 41 H 0.377 0.623 42 H 0.255 0.745 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.136 0.864 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.133 0.867 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -11.075 -29.040 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.480 6.480 4 N -0.336 5.336 5 C -0.070 4.070 6 C -0.027 4.027 7 C 0.277 3.723 8 O -0.456 6.456 9 N -0.334 5.334 10 C 0.000 4.000 11 C 0.023 3.977 12 N -0.384 5.384 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.261 4.261 16 N -0.615 5.615 17 Si 0.804 3.196 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.210 1.210 21 C -0.005 4.005 22 C -0.139 4.139 23 C -0.085 4.085 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.150 4.150 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.173 0.827 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.005 0.995 41 H 0.209 0.791 42 H 0.064 0.936 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.154 0.846 48 H 0.162 0.838 49 H 0.159 0.841 50 H 0.151 0.849 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.169 -10.371 -28.540 31.445 hybrid contribution 0.573 0.959 1.559 1.918 sum -7.596 -9.412 -26.981 29.568 Atomic orbital electron populations 1.22004 0.88071 1.06724 1.05879 1.21745 0.92665 0.82587 0.73822 1.90714 1.72074 1.33241 1.51970 1.47735 1.05546 1.08118 1.72172 1.22198 0.98836 0.83624 1.02376 1.21583 0.81439 1.07365 0.92270 1.22040 0.82042 0.75005 0.93240 1.90699 1.61063 1.50751 1.43116 1.48022 1.05772 1.72550 1.07103 1.21347 0.99067 0.95672 0.83942 1.20989 0.94153 0.95970 0.86568 1.42367 1.75247 1.05491 1.15301 1.19572 1.33760 0.86501 0.98621 0.91519 1.25584 1.02100 1.00764 0.97670 1.69818 1.50591 1.27203 1.13892 0.85052 0.77427 0.79122 0.78012 1.19576 1.21688 1.20985 1.21885 0.95703 0.96213 0.86698 1.21055 0.99074 0.98193 0.95579 1.19720 0.93709 1.00597 0.94469 1.21274 1.00799 1.00271 0.91617 1.21450 0.93742 0.99356 0.99427 1.21469 0.95784 0.99895 0.97609 1.21391 1.00527 0.99845 0.92745 1.21252 0.93520 1.00808 0.99410 0.86930 0.89493 0.86810 0.93584 0.87296 0.88187 0.87204 0.82720 0.92114 0.88328 0.95243 0.99533 0.79115 0.93648 0.86611 0.88594 0.92343 0.91317 0.84630 0.83815 0.84129 0.84916 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.01 71.24 0.71 -1.77 16 2 C 0.50 12.73 7.77 87.66 0.68 13.41 16 3 O -0.60 -21.86 16.73 -3.05 -0.05 -21.91 16 4 N -0.60 -12.23 2.36 -851.12 -2.01 -14.24 16 5 C 0.07 0.77 10.01 127.77 1.28 2.05 16 6 C 0.10 2.01 4.45 85.63 0.38 2.39 16 7 C 0.49 15.07 7.74 87.66 0.68 15.75 16 8 O -0.58 -24.08 16.01 -3.03 -0.05 -24.12 16 9 N -0.60 -17.15 2.47 -821.83 -2.03 -19.18 16 10 C 0.12 4.50 5.56 86.38 0.48 4.98 16 11 C 0.15 7.00 6.58 86.38 0.57 7.57 16 12 N -0.74 -41.38 5.60 -343.45 -1.92 -43.31 16 13 C -0.25 -15.37 9.99 84.03 0.84 -14.53 16 14 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 16 N -0.96 -61.13 13.06 21.65 0.28 -60.85 16 17 Si 0.98 48.54 29.55 68.60 2.03 50.56 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 21 C 0.12 2.27 5.24 86.38 0.45 2.72 16 22 C -0.10 -2.29 5.67 29.85 0.17 -2.12 16 23 C -0.08 -1.68 5.13 -19.86 -0.10 -1.79 16 24 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 25 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 28 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 29 H 0.11 0.89 5.49 -2.39 -0.01 0.88 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.47 6.14 -2.39 -0.01 0.45 16 34 H 0.10 0.57 7.83 -2.38 -0.02 0.55 16 35 H 0.11 2.31 6.54 -2.39 -0.02 2.30 16 36 H 0.16 1.49 7.12 -2.39 -0.02 1.47 16 37 H 0.06 2.51 7.42 -2.39 -0.02 2.49 16 38 H 0.10 3.16 7.89 -2.39 -0.02 3.14 16 39 H 0.03 1.33 6.26 -2.39 -0.01 1.31 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.38 21.70 7.67 -92.71 -0.71 20.99 16 42 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 43 H 0.12 1.36 6.44 -2.39 -0.02 1.34 16 44 H 0.10 1.72 7.89 -2.39 -0.02 1.70 16 45 H 0.06 1.69 6.21 -2.39 -0.01 1.67 16 46 H 0.07 1.66 7.17 -2.39 -0.02 1.65 16 47 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 48 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 50 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 51 H 0.12 2.53 8.06 -2.92 -0.02 2.50 16 Total: -1.00 -90.66 419.36 4.18 -86.48 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.22 Total: 31.08 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.71 Total: 15.49 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -5.68 Total: -137.58 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.10 Total: -46.04 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.56 kcal Total: -90.66 4.18 -86.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162701899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.344 kcal (2) G-P(sol) polarization free energy of solvation -90.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds