Wall clock time and date at job start Wed Apr 1 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47291 * 2 1 4 4 C 1.34230 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00069 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99906 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47158 * 180.02562 * 6 4 3 8 8 N 1.46895 * 109.52061 * 59.87981 * 7 6 4 9 9 C 1.53118 * 109.52766 * 299.68562 * 7 6 4 10 10 C 1.53028 * 109.28212 * 182.44146 * 9 7 6 11 11 N 1.46842 * 109.52438 * 59.17775 * 10 9 7 12 12 C 1.38093 * 111.00059 * 174.16181 * 11 10 9 13 13 N 1.32265 * 119.90974 * 62.40661 * 12 11 10 14 14 C 1.31961 * 121.87437 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.28338 * 180.02562 * 14 13 12 16 16 C 1.38688 * 121.44377 * 0.02562 * 14 13 12 17 17 C 1.38003 * 119.62769 * 359.97438 * 16 14 13 18 18 C 1.41009 * 118.28163 * 359.74653 * 17 16 14 19 19 C 1.41016 * 120.70926 * 180.24681 * 18 17 16 20 20 H 1.07993 * 120.00145 * 155.42090 * 19 18 17 21 21 C 1.39954 * 119.99836 * 335.41771 * 19 18 17 22 22 N 1.30864 * 119.99740 * 343.78749 * 21 19 18 23 23 Si 1.86804 * 119.99687 * 163.78264 * 21 19 18 24 24 H 1.48492 * 109.46937 * 60.00501 * 23 21 19 25 25 H 1.48504 * 109.46762 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47134 * 300.00090 * 23 21 19 27 27 C 1.46844 * 111.20089 * 298.25839 * 11 10 9 28 28 C 1.53037 * 109.52051 * 61.74228 * 27 11 10 29 29 H 1.09007 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47451 * 299.99922 * 1 2 3 31 31 H 1.09006 * 109.47445 * 60.00119 * 1 2 3 32 32 H 1.09005 * 109.47081 * 239.99690 * 2 1 3 33 33 H 1.09008 * 109.47065 * 120.00251 * 2 1 3 34 34 H 1.09000 * 109.47527 * 300.00917 * 6 4 3 35 35 H 1.09009 * 109.47008 * 60.00287 * 6 4 3 36 36 H 1.00901 * 111.00148 * 299.99295 * 8 7 6 37 37 H 1.00899 * 111.00489 * 63.95087 * 8 7 6 38 38 H 1.09008 * 109.50243 * 302.38707 * 9 7 6 39 39 H 1.09006 * 109.50047 * 62.49799 * 9 7 6 40 40 H 1.08999 * 109.46362 * 299.16077 * 10 9 7 41 41 H 1.09000 * 109.46549 * 179.19724 * 10 9 7 42 42 H 1.09003 * 109.47056 * 89.99740 * 15 14 13 43 43 H 1.08997 * 109.47361 * 210.00291 * 15 14 13 44 44 H 1.09004 * 109.46802 * 330.00241 * 15 14 13 45 45 H 1.08006 * 120.18622 * 180.02562 * 16 14 13 46 46 H 1.07997 * 120.85954 * 180.02562 * 17 16 14 47 47 H 0.97006 * 119.99753 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.46071 * 301.72623 * 27 11 10 49 49 H 1.09001 * 109.45278 * 181.74881 * 27 11 10 50 50 H 1.09007 * 109.50280 * 180.87905 * 28 27 11 51 51 H 1.09002 * 109.50474 * 60.76074 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 7 5.9025 2.1371 -1.1971 9 6 5.9222 2.1172 1.2542 10 6 7.4521 2.0935 1.2794 11 7 7.9643 3.4697 1.2787 12 6 9.3365 3.4872 1.4323 13 7 10.1095 2.9222 0.5197 14 6 11.4247 2.9167 0.6272 15 6 12.2494 2.2564 -0.4474 16 6 12.0648 3.5053 1.7077 17 6 11.3168 4.1125 2.6957 18 6 9.9129 4.1156 2.5641 19 6 9.0994 4.7261 3.5409 20 1 8.1134 5.0798 3.2783 21 6 9.5698 4.8734 4.8508 22 7 10.6044 4.1822 5.2560 23 14 8.7208 6.0570 6.0204 24 1 7.3027 5.6512 6.1921 25 1 9.4070 6.0291 7.3371 26 1 8.7783 7.4317 5.4617 27 6 7.5619 4.1854 0.0612 28 6 6.0352 4.2716 -0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5851 3.4690 -0.8904 35 1 3.5844 3.4700 0.8896 36 1 5.5299 1.1997 -1.2183 37 1 5.6596 2.6418 -2.0364 38 1 5.5514 2.6305 2.1415 39 1 5.5426 1.0955 1.2389 40 1 7.8218 1.5680 0.3990 41 1 7.7926 1.5798 2.1784 42 1 12.4937 2.9872 -1.2184 43 1 13.1692 1.8666 -0.0116 44 1 11.6815 1.4378 -0.8897 45 1 13.1426 3.4893 1.7750 46 1 11.7945 4.5772 3.5455 47 1 10.9307 4.2846 6.1638 48 1 7.9311 3.6501 -0.8135 49 1 7.9821 5.1911 0.0757 50 1 5.7364 4.7892 -0.9120 51 1 5.6663 4.8188 0.8672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163530218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:29 Heat of formation + Delta-G solvation = -54.911757 kcal Electronic energy + Delta-G solvation = -31702.036950 eV Core-core repulsion = 27600.809018 eV Total energy + Delta-G solvation = -4101.227932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.97786 -39.29762 -38.08705 -36.69895 -34.71489 -34.12068 -32.14308 -30.97588 -30.36595 -30.26715 -29.62224 -28.19382 -27.49514 -24.28555 -23.63687 -22.67884 -22.46015 -21.17264 -20.55364 -20.08801 -18.54731 -17.83258 -17.18727 -16.90872 -16.49677 -15.96690 -15.47456 -15.30041 -14.77494 -14.44198 -14.31551 -14.09884 -13.98582 -13.68548 -13.30651 -13.19422 -12.96471 -12.93745 -12.66961 -12.42105 -12.09101 -12.00660 -11.89868 -11.78117 -11.63366 -11.57174 -11.37607 -11.32851 -11.04680 -10.88197 -10.87240 -10.80358 -10.73188 -10.48591 -10.41197 -10.07374 -9.70759 -9.61993 -9.23983 -8.52557 -8.19510 -7.99604 -7.28840 -7.22388 -6.72741 -4.29004 2.01312 2.45261 2.67462 2.99481 3.07151 3.10498 3.26997 3.93147 4.43986 4.56007 4.59527 4.65346 4.66140 4.76031 4.93226 4.94788 5.00438 5.22345 5.38488 5.41688 5.42677 5.47758 5.61280 5.61945 5.86114 5.90046 6.07321 6.12230 6.15463 6.17440 6.18619 6.35914 6.43005 6.47164 6.50252 6.56216 6.61622 6.71943 6.82418 6.90830 7.05708 7.09583 7.23305 7.29163 7.41758 7.54294 7.72791 7.80094 7.82441 8.10577 8.12316 8.43389 8.71357 8.80206 9.09108 9.74853 10.15612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.003159 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.857208 B = 8862.515378 C =10576.658739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.497 6.497 6 C -0.148 4.148 7 C 0.137 3.863 8 N -0.831 5.831 9 C -0.112 4.112 10 C 0.081 3.919 11 N -0.452 5.452 12 C 0.162 3.838 13 N -0.482 5.482 14 C -0.012 4.012 15 C -0.071 4.071 16 C -0.147 4.147 17 C -0.139 4.139 18 C 0.090 3.910 19 C -0.415 4.415 20 H 0.091 0.909 21 C 0.069 3.931 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.280 1.280 26 H -0.264 1.264 27 C 0.074 3.926 28 C -0.100 4.100 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.350 0.650 37 H 0.330 0.670 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.281 0.719 48 H 0.050 0.950 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 -2.616 -7.853 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.306 3.694 5 O -0.385 6.385 6 C -0.188 4.188 7 C 0.044 3.956 8 N -0.365 5.365 9 C -0.150 4.150 10 C -0.047 4.047 11 N -0.174 5.174 12 C -0.070 4.070 13 N -0.194 5.194 14 C -0.152 4.152 15 C -0.129 4.129 16 C -0.167 4.167 17 C -0.165 4.165 18 C 0.084 3.916 19 C -0.444 4.444 20 H 0.109 0.891 21 C -0.149 4.149 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.188 1.188 27 C -0.054 4.054 28 C -0.139 4.139 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.145 0.855 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.820 -3.070 -7.648 16.957 hybrid contribution -0.627 0.255 0.542 0.867 sum -15.447 -2.814 -7.107 17.234 Atomic orbital electron populations 1.21807 0.92699 1.02964 1.03486 1.23021 0.95320 0.80315 1.02700 1.86526 1.24956 1.32406 1.84030 1.23951 0.80330 0.93080 0.72043 1.90586 1.59607 1.43342 1.44937 1.22550 0.99538 0.90705 1.06006 1.20719 0.86687 0.95478 0.92745 1.58807 1.67691 1.07062 1.02962 1.21865 0.97284 1.00751 0.95087 1.21749 0.92525 0.89690 1.00711 1.59446 1.07799 1.14649 1.35553 1.19369 0.87445 1.04450 0.95738 1.66808 1.06159 1.16709 1.29680 1.20008 0.89570 1.07814 0.97788 1.20257 0.97431 0.98905 0.96341 1.21407 0.98435 1.01075 0.95801 1.21640 0.93694 1.02408 0.98787 1.18111 0.92006 0.89768 0.91750 1.19497 1.02022 1.30672 0.92245 0.89062 1.26066 0.94549 0.94736 0.99522 1.69827 1.21359 1.32077 1.18578 0.86308 0.80273 0.81291 0.78529 1.18840 1.20533 1.18832 1.21814 0.92752 0.98261 0.92574 1.21640 0.97205 0.93623 1.01393 0.90250 0.91441 0.91561 0.91264 0.91093 0.88070 0.87122 0.83217 0.85800 0.91639 0.90276 0.93243 0.92299 0.93551 0.93198 0.92901 0.88700 0.85521 0.90787 0.93127 0.92261 0.92300 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.15 0.38 -0.53 16 2 C 0.06 0.52 6.18 37.15 0.23 0.75 16 3 O -0.36 -3.85 10.22 -39.26 -0.40 -4.26 16 4 C 0.46 5.44 7.46 36.00 0.27 5.71 16 5 O -0.50 -7.00 11.33 -18.75 -0.21 -7.21 16 6 C -0.15 -1.56 5.06 -27.89 -0.14 -1.70 16 7 C 0.14 1.86 0.54 -131.48 -0.07 1.79 16 8 N -0.83 -11.44 7.53 0.84 0.01 -11.43 16 9 C -0.11 -1.86 4.70 -26.66 -0.13 -1.98 16 10 C 0.08 1.67 5.11 -3.84 -0.02 1.65 16 11 N -0.45 -9.91 3.82 -172.72 -0.66 -10.57 16 12 C 0.16 4.09 5.31 -155.02 -0.82 3.26 16 13 N -0.48 -12.03 9.60 -8.11 -0.08 -12.11 16 14 C -0.01 -0.28 6.79 -82.37 -0.56 -0.84 16 15 C -0.07 -1.37 10.15 36.00 0.37 -1.01 16 16 C -0.15 -3.51 9.69 -39.50 -0.38 -3.90 16 17 C -0.14 -3.62 8.79 -38.62 -0.34 -3.96 16 18 C 0.09 2.39 5.60 -106.47 -0.60 1.79 16 19 C -0.41 -10.75 8.71 -37.89 -0.33 -11.08 16 20 H 0.09 2.32 7.60 -52.49 -0.40 1.92 16 21 C 0.07 1.69 5.20 -17.32 -0.09 1.60 16 22 N -0.79 -20.13 10.91 55.55 0.61 -19.53 16 23 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C 0.07 1.40 5.11 -3.84 -0.02 1.38 16 28 C -0.10 -1.44 5.01 -26.65 -0.13 -1.57 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.07 0.63 8.13 -51.92 -0.42 0.21 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.35 4.96 6.32 -39.29 -0.25 4.71 16 37 H 0.33 3.82 8.99 -39.29 -0.35 3.46 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 39 H 0.08 1.33 5.62 -51.93 -0.29 1.04 16 40 H 0.05 1.10 7.57 -51.93 -0.39 0.71 16 41 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 46 H 0.13 3.34 6.21 -52.49 -0.33 3.01 16 47 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 48 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 49 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -29.55 402.25 -10.39 -39.94 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -8.29 Total: 14.34 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.39 Total: -8.62 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.13 Total: -53.64 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.61 Total: -11.47 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.55 -10.39 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163530218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.970 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds