Wall clock time and date at job start Wed Apr 1 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47291 * 2 1 4 4 C 1.34230 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00069 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99906 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47158 * 180.02562 * 6 4 3 8 8 N 1.46895 * 109.52061 * 59.87981 * 7 6 4 9 9 C 1.53118 * 109.52766 * 299.68562 * 7 6 4 10 10 C 1.53028 * 109.28212 * 182.44146 * 9 7 6 11 11 N 1.46842 * 109.52438 * 59.17775 * 10 9 7 12 12 C 1.38093 * 111.00059 * 174.16181 * 11 10 9 13 13 N 1.32265 * 119.90974 * 62.40661 * 12 11 10 14 14 C 1.31961 * 121.87437 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.28338 * 180.02562 * 14 13 12 16 16 C 1.38688 * 121.44377 * 0.02562 * 14 13 12 17 17 C 1.38003 * 119.62769 * 359.97438 * 16 14 13 18 18 C 1.41009 * 118.28163 * 359.74653 * 17 16 14 19 19 C 1.41016 * 120.70926 * 180.24681 * 18 17 16 20 20 H 1.07993 * 120.00145 * 155.42090 * 19 18 17 21 21 C 1.39954 * 119.99836 * 335.41771 * 19 18 17 22 22 N 1.30864 * 119.99740 * 343.78749 * 21 19 18 23 23 Si 1.86804 * 119.99687 * 163.78264 * 21 19 18 24 24 H 1.48492 * 109.46937 * 60.00501 * 23 21 19 25 25 H 1.48504 * 109.46762 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47134 * 300.00090 * 23 21 19 27 27 C 1.46844 * 111.20089 * 298.25839 * 11 10 9 28 28 C 1.53037 * 109.52051 * 61.74228 * 27 11 10 29 29 H 1.09007 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47451 * 299.99922 * 1 2 3 31 31 H 1.09006 * 109.47445 * 60.00119 * 1 2 3 32 32 H 1.09005 * 109.47081 * 239.99690 * 2 1 3 33 33 H 1.09008 * 109.47065 * 120.00251 * 2 1 3 34 34 H 1.09000 * 109.47527 * 300.00917 * 6 4 3 35 35 H 1.09009 * 109.47008 * 60.00287 * 6 4 3 36 36 H 1.00901 * 111.00148 * 299.99295 * 8 7 6 37 37 H 1.00899 * 111.00489 * 63.95087 * 8 7 6 38 38 H 1.09008 * 109.50243 * 302.38707 * 9 7 6 39 39 H 1.09006 * 109.50047 * 62.49799 * 9 7 6 40 40 H 1.08999 * 109.46362 * 299.16077 * 10 9 7 41 41 H 1.09000 * 109.46549 * 179.19724 * 10 9 7 42 42 H 1.09003 * 109.47056 * 89.99740 * 15 14 13 43 43 H 1.08997 * 109.47361 * 210.00291 * 15 14 13 44 44 H 1.09004 * 109.46802 * 330.00241 * 15 14 13 45 45 H 1.08006 * 120.18622 * 180.02562 * 16 14 13 46 46 H 1.07997 * 120.85954 * 180.02562 * 17 16 14 47 47 H 0.97006 * 119.99753 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.46071 * 301.72623 * 27 11 10 49 49 H 1.09001 * 109.45278 * 181.74881 * 27 11 10 50 50 H 1.09007 * 109.50280 * 180.87905 * 28 27 11 51 51 H 1.09002 * 109.50474 * 60.76074 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 7 5.9025 2.1371 -1.1971 9 6 5.9222 2.1172 1.2542 10 6 7.4521 2.0935 1.2794 11 7 7.9643 3.4697 1.2787 12 6 9.3365 3.4872 1.4323 13 7 10.1095 2.9222 0.5197 14 6 11.4247 2.9167 0.6272 15 6 12.2494 2.2564 -0.4474 16 6 12.0648 3.5053 1.7077 17 6 11.3168 4.1125 2.6957 18 6 9.9129 4.1156 2.5641 19 6 9.0994 4.7261 3.5409 20 1 8.1134 5.0798 3.2783 21 6 9.5698 4.8734 4.8508 22 7 10.6044 4.1822 5.2560 23 14 8.7208 6.0570 6.0204 24 1 7.3027 5.6512 6.1921 25 1 9.4070 6.0291 7.3371 26 1 8.7783 7.4317 5.4617 27 6 7.5619 4.1854 0.0612 28 6 6.0352 4.2716 -0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5851 3.4690 -0.8904 35 1 3.5844 3.4700 0.8896 36 1 5.5299 1.1997 -1.2183 37 1 5.6596 2.6418 -2.0364 38 1 5.5514 2.6305 2.1415 39 1 5.5426 1.0955 1.2389 40 1 7.8218 1.5680 0.3990 41 1 7.7926 1.5798 2.1784 42 1 12.4937 2.9872 -1.2184 43 1 13.1692 1.8666 -0.0116 44 1 11.6815 1.4378 -0.8897 45 1 13.1426 3.4893 1.7750 46 1 11.7945 4.5772 3.5455 47 1 10.9307 4.2846 6.1638 48 1 7.9311 3.6501 -0.8135 49 1 7.9821 5.1911 0.0757 50 1 5.7364 4.7892 -0.9120 51 1 5.6663 4.8188 0.8672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163530218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:27 Heat of formation + Delta-G solvation = -72.279096 kcal Electronic energy + Delta-G solvation = -31702.790054 eV Core-core repulsion = 27600.809018 eV Total energy + Delta-G solvation = -4101.981037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.95029 -40.87536 -39.53126 -37.75835 -36.13503 -36.00466 -32.85691 -32.69469 -32.09347 -31.71804 -30.61959 -29.67664 -29.21710 -25.90104 -24.77325 -24.09763 -23.68998 -22.65497 -22.10767 -21.58290 -19.85757 -19.11799 -18.72834 -17.74144 -17.62888 -17.43994 -17.31627 -16.38815 -16.25432 -15.79162 -15.67715 -15.49100 -15.33313 -15.05254 -14.64831 -14.60732 -14.20193 -14.14156 -13.78824 -13.57259 -13.47478 -13.34413 -13.23242 -13.13812 -13.05416 -12.98058 -12.64660 -12.57035 -12.51914 -12.46177 -12.40452 -12.15931 -12.03986 -11.84896 -11.64973 -11.52850 -11.31917 -11.08682 -10.91931 -10.14900 -9.95058 -9.54204 -9.20764 -8.95894 -8.58521 -6.25321 0.79782 1.09031 1.13237 1.41388 1.52834 1.58119 1.66711 2.23303 2.77143 3.22950 3.52739 3.61877 3.66881 3.77297 3.96464 3.99688 4.04208 4.08252 4.17452 4.34384 4.43049 4.47152 4.47727 4.60340 4.65926 4.69580 4.73589 4.77792 4.85667 4.91054 4.94608 4.98465 4.99692 5.02587 5.04072 5.08049 5.12420 5.17415 5.26438 5.28413 5.36133 5.39497 5.50246 5.52634 5.82276 5.89849 6.19981 6.38398 6.45464 6.49451 6.65527 6.77889 6.82265 6.86504 7.19728 7.81812 8.32004 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.003159 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.857208 B = 8862.515378 C =10576.658739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.527 6.527 6 C -0.139 4.139 7 C 0.145 3.855 8 N -0.845 5.845 9 C -0.103 4.103 10 C 0.092 3.908 11 N -0.458 5.458 12 C 0.153 3.847 13 N -0.497 5.497 14 C -0.024 4.024 15 C -0.065 4.065 16 C -0.152 4.152 17 C -0.162 4.162 18 C 0.057 3.943 19 C -0.440 4.440 20 H 0.088 0.912 21 C 0.030 3.970 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.258 1.258 27 C 0.078 3.922 28 C -0.092 4.092 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.348 0.652 37 H 0.344 0.656 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.289 0.711 48 H 0.034 0.966 49 H 0.044 0.956 50 H 0.094 0.906 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 -1.692 -8.578 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.416 6.416 6 C -0.178 4.178 7 C 0.051 3.949 8 N -0.381 5.381 9 C -0.141 4.141 10 C -0.036 4.036 11 N -0.181 5.181 12 C -0.080 4.080 13 N -0.209 5.209 14 C -0.164 4.164 15 C -0.123 4.123 16 C -0.172 4.172 17 C -0.189 4.189 18 C 0.051 3.949 19 C -0.469 4.469 20 H 0.106 0.894 21 C -0.185 4.185 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.050 4.050 28 C -0.130 4.130 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.112 0.888 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.932 -2.145 -8.400 19.023 hybrid contribution 0.105 -0.134 0.706 0.726 sum -16.827 -2.279 -7.695 18.643 Atomic orbital electron populations 1.21819 0.90526 1.04265 1.03722 1.23252 0.97023 0.79395 1.02413 1.86522 1.24183 1.33533 1.83611 1.24163 0.80566 0.93210 0.71214 1.90584 1.60284 1.44357 1.46417 1.22419 0.96531 0.90481 1.08412 1.20503 0.89058 0.94235 0.91093 1.58733 1.68379 1.07271 1.03688 1.21776 0.93829 1.01352 0.97177 1.21593 0.95436 0.88664 0.97891 1.59480 1.06227 1.15184 1.37187 1.19731 0.89023 1.03781 0.95422 1.66957 1.06924 1.17169 1.29872 1.20826 0.89746 1.07096 0.98724 1.20288 0.97533 0.98996 0.95444 1.21697 0.99800 1.00388 0.95274 1.21686 0.93994 1.03759 0.99416 1.18502 0.92721 0.90815 0.92840 1.19624 1.02115 1.31980 0.93210 0.89427 1.26910 0.95113 0.95809 1.00670 1.69880 1.22622 1.33069 1.19423 0.85202 0.79188 0.78750 0.76308 1.18230 1.19535 1.18240 1.21808 0.96222 0.96491 0.90464 1.21606 0.93320 0.94571 1.03493 0.88448 0.91397 0.91063 0.91241 0.91807 0.84763 0.85498 0.83428 0.84163 0.91599 0.90529 0.95245 0.95852 0.91748 0.90817 0.92926 0.85990 0.86597 0.90063 0.94775 0.93791 0.88756 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.83 6.18 71.98 0.45 1.28 16 3 O -0.36 -6.95 10.22 -51.41 -0.53 -7.48 16 4 C 0.46 10.04 7.46 71.24 0.53 10.57 16 5 O -0.53 -14.46 11.33 21.96 0.25 -14.21 16 6 C -0.14 -2.48 5.06 29.85 0.15 -2.33 16 7 C 0.14 3.69 0.54 3.61 0.00 3.69 16 8 N -0.84 -22.26 7.53 -151.26 -1.14 -23.40 16 9 C -0.10 -3.44 4.70 30.64 0.14 -3.30 16 10 C 0.09 3.97 5.11 86.32 0.44 4.41 16 11 N -0.46 -20.77 3.82 -700.37 -2.68 -23.45 16 12 C 0.15 8.01 5.31 134.05 0.71 8.72 16 13 N -0.50 -25.54 9.60 -179.57 -1.72 -27.27 16 14 C -0.02 -1.15 6.79 42.65 0.29 -0.86 16 15 C -0.06 -2.41 10.15 71.24 0.72 -1.69 16 16 C -0.15 -7.36 9.69 22.32 0.22 -7.14 16 17 C -0.16 -8.77 8.79 22.89 0.20 -8.57 16 18 C 0.06 3.18 5.60 -21.06 -0.12 3.06 16 19 C -0.44 -23.62 8.71 23.37 0.20 -23.41 16 20 H 0.09 4.60 7.60 -2.91 -0.02 4.58 16 21 C 0.03 1.49 5.20 85.25 0.44 1.94 16 22 N -0.82 -42.95 10.91 21.83 0.24 -42.71 16 23 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 27 C 0.08 2.97 5.11 86.33 0.44 3.41 16 28 C -0.09 -2.45 5.01 30.65 0.15 -2.29 16 29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.07 1.09 8.13 -2.38 -0.02 1.07 16 33 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 34 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.35 9.62 6.32 -89.69 -0.57 9.05 16 37 H 0.34 7.21 8.99 -89.69 -0.81 6.41 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.08 2.62 5.62 -2.38 -0.01 2.61 16 40 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 41 H 0.02 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.12 5.10 8.06 -2.91 -0.02 5.07 16 46 H 0.12 6.39 6.21 -2.91 -0.02 6.37 16 47 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 48 H 0.03 1.41 7.56 -2.39 -0.02 1.39 16 49 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 50 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.03 402.25 1.74 -66.28 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.43 Total: 45.60 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 5.72 Total: -13.23 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.30 Total: -116.83 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.28 Total: -21.69 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -68.03 1.74 -66.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163530218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.999 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds