Wall clock time and date at job start Wed Apr 1 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35525 * 125.68101 * 2 1 4 4 C 1.35457 * 108.87229 * 180.26245 * 3 2 1 5 5 C 1.39837 * 107.86554 * 359.77032 * 4 3 2 6 6 C 1.37657 * 125.67067 * 179.86692 * 2 1 3 7 7 C 1.46672 * 126.23716 * 0.02562 * 6 2 1 8 8 O 1.21692 * 119.99974 * 16.97657 * 7 6 2 9 9 N 1.34780 * 120.00000 * 196.97635 * 7 6 2 10 10 C 1.48196 * 127.79779 * 356.50055 * 9 7 6 11 11 C 1.54517 * 104.63587 * 140.72177 * 10 9 7 12 12 H 1.08997 * 110.37580 * 264.84530 * 11 10 9 13 13 C 1.52993 * 110.37734 * 142.60425 * 11 10 9 14 14 N 1.46501 * 109.46960 * 66.45518 * 13 11 10 15 15 C 1.36942 * 120.00276 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99440 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00265 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46942 * 90.00066 * 19 17 15 21 21 H 1.48499 * 109.47400 * 209.99921 * 19 17 15 22 22 H 1.48497 * 109.47223 * 330.00092 * 19 17 15 23 23 C 1.53781 * 104.77665 * 23.78195 * 11 10 9 24 24 C 1.48256 * 127.79930 * 176.49642 * 9 7 6 25 25 C 1.52598 * 110.26587 * 240.94816 * 23 11 10 26 26 C 1.53199 * 109.19890 * 182.29781 * 25 23 11 27 27 O 1.42908 * 109.34404 * 56.67753 * 26 25 23 28 28 C 1.42916 * 114.21444 * 298.38687 * 27 26 25 29 29 C 1.52581 * 110.27905 * 118.79153 * 23 11 10 30 30 H 1.09000 * 109.47003 * 265.60413 * 1 2 3 31 31 H 1.08997 * 109.46890 * 25.60536 * 1 2 3 32 32 H 1.09002 * 109.47153 * 145.60437 * 1 2 3 33 33 H 1.08002 * 125.56576 * 359.97438 * 3 2 1 34 34 H 1.07995 * 126.06397 * 179.78527 * 4 3 2 35 35 H 1.07997 * 126.45902 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.40251 * 21.93290 * 10 9 7 37 37 H 1.08999 * 110.49682 * 259.56078 * 10 9 7 38 38 H 1.09001 * 109.47402 * 186.45002 * 13 11 10 39 39 H 1.08995 * 109.47671 * 306.45920 * 13 11 10 40 40 H 0.97005 * 119.99867 * 359.97438 * 14 13 11 41 41 H 0.97000 * 120.00131 * 180.02562 * 18 17 15 42 42 H 1.08996 * 110.42580 * 337.88362 * 24 9 7 43 43 H 1.08997 * 110.42493 * 100.25215 * 24 9 7 44 44 H 1.08996 * 109.51858 * 302.21858 * 25 23 11 45 45 H 1.08998 * 109.51236 * 62.38140 * 25 23 11 46 46 H 1.09000 * 109.49527 * 296.71423 * 26 25 23 47 47 H 1.09005 * 109.49277 * 176.63539 * 26 25 23 48 48 H 1.09005 * 109.49048 * 301.65311 * 28 27 26 49 49 H 1.08997 * 109.51552 * 181.58932 * 28 27 26 50 50 H 1.08997 * 109.52065 * 297.61305 * 29 23 11 51 51 H 1.08998 * 109.51622 * 57.78447 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 -0.0059 5 6 3.5780 -0.6890 -0.0044 6 6 2.2677 -1.1183 0.0026 7 6 1.8122 -2.5125 0.0053 8 8 0.6653 -2.7785 -0.3023 9 7 2.6640 -3.4991 0.3485 10 6 4.1035 -3.3815 0.6807 11 6 4.3157 -4.3673 1.8515 12 1 4.2431 -3.8448 2.8054 13 6 5.6746 -5.0588 1.7261 14 7 6.7428 -4.0722 1.9048 15 6 8.0537 -4.4621 1.8346 16 1 8.3000 -5.4969 1.6479 17 6 9.0659 -3.5274 2.0045 18 7 8.7656 -2.2664 2.2326 19 14 10.8539 -4.0593 1.9094 20 1 11.3287 -3.9509 0.5065 21 1 11.6781 -3.1830 2.7800 22 1 10.9766 -5.4670 2.3661 23 6 3.1782 -5.3927 1.7119 24 6 2.3724 -4.9468 0.4789 25 6 2.2928 -5.3723 2.9546 26 6 1.2038 -6.4408 2.8148 27 8 1.8153 -7.7151 2.6036 28 6 2.5996 -7.7986 1.4118 29 6 3.7500 -6.7898 1.4897 30 1 -0.3633 -0.0788 1.0246 31 1 -0.3633 0.9267 -0.4441 32 1 -0.3633 -0.8480 -0.5805 33 1 1.9083 2.1235 -0.0004 34 1 4.4132 1.3610 -0.0106 35 1 4.4583 -1.3146 -0.0075 36 1 4.3396 -2.3642 0.9928 37 1 4.7169 -3.6682 -0.1735 38 1 5.7615 -5.8308 2.4907 39 1 5.7614 -5.5133 0.7392 40 1 6.5216 -3.1428 2.0729 41 1 9.4729 -1.6132 2.3509 42 1 1.3068 -5.1070 0.6424 43 1 2.7051 -5.4834 -0.4097 44 1 2.8979 -5.5823 3.8365 45 1 1.8292 -4.3910 3.0552 46 1 0.5640 -6.1993 1.9661 47 1 0.6051 -6.4712 3.7252 48 1 1.9743 -7.5712 0.5483 49 1 3.0048 -8.8055 1.3123 50 1 4.3143 -6.8083 0.5574 51 1 4.4072 -7.0505 2.3193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186331211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:00 Heat of formation + Delta-G solvation = 1.838289 kcal Electronic energy + Delta-G solvation = -32354.014596 eV Core-core repulsion = 28255.247530 eV Total energy + Delta-G solvation = -4098.767066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47554 -40.69637 -38.61925 -37.29301 -34.68496 -33.71127 -32.66198 -31.72705 -31.13999 -29.66834 -29.22858 -26.77372 -26.54009 -25.61754 -24.48343 -23.76329 -22.30001 -21.98590 -20.67279 -20.36594 -19.14384 -18.48329 -17.35276 -16.97990 -16.40510 -16.08950 -15.90630 -15.82800 -15.28552 -15.15810 -14.90274 -14.62824 -14.48059 -14.12481 -13.78766 -13.47357 -13.30908 -13.28053 -13.05693 -12.76246 -12.52147 -12.41041 -12.35786 -12.22005 -12.08691 -11.99898 -11.58656 -11.47479 -11.27867 -11.01025 -10.90193 -10.80293 -10.67498 -10.19142 -10.08002 -9.99539 -9.86511 -9.71249 -9.38921 -8.88369 -8.75015 -8.65504 -8.16198 -6.94424 -5.78356 -3.07267 1.51924 2.50877 2.79904 3.24657 3.40255 3.42758 3.48451 3.49686 3.84302 4.34832 4.50192 4.60184 4.64401 4.70871 4.74755 4.97714 4.98443 5.06343 5.08916 5.10085 5.20257 5.33427 5.35756 5.40444 5.45945 5.48271 5.51853 5.55755 5.57799 5.63830 5.67846 5.77104 5.84870 5.93428 5.95322 6.04012 6.06862 6.14108 6.19525 6.27631 6.28656 6.35828 6.43025 6.71080 6.79684 6.82894 7.01216 7.15635 7.20792 7.55915 7.68670 8.16165 8.40105 9.51767 10.07948 10.42496 11.44218 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007251 B = 0.004434 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3860.601294 B = 6313.946748 C = 9717.039733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.416 5.416 3 C 0.009 3.991 4 C -0.203 4.203 5 C -0.141 4.141 6 C -0.053 4.053 7 C 0.611 3.389 8 O -0.562 6.562 9 N -0.608 5.608 10 C 0.091 3.909 11 C -0.097 4.097 12 H 0.084 0.916 13 C 0.162 3.838 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.064 4.064 24 C 0.117 3.883 25 C -0.139 4.139 26 C 0.060 3.940 27 O -0.383 6.383 28 C 0.058 3.942 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -0.062 -3.215 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.089 5.089 3 C -0.125 4.125 4 C -0.227 4.227 5 C -0.167 4.167 6 C -0.166 4.166 7 C 0.402 3.598 8 O -0.444 6.444 9 N -0.339 5.339 10 C -0.031 4.031 11 C -0.116 4.116 12 H 0.103 0.897 13 C 0.035 3.965 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.066 4.066 24 C -0.005 4.005 25 C -0.177 4.177 26 C -0.017 4.017 27 O -0.302 6.302 28 C -0.019 4.019 29 C -0.183 4.183 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.184 0.816 34 H 0.162 0.838 35 H 0.178 0.822 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.102 0.898 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.706 -0.400 -3.297 18.999 hybrid contribution 1.146 0.549 -0.142 1.278 sum -17.560 0.148 -3.439 17.894 Atomic orbital electron populations 1.22222 0.76568 1.04894 1.03787 1.43774 1.06500 1.04952 1.53716 1.22003 0.90796 0.91276 1.08447 1.20937 0.95992 0.95285 1.10530 1.22026 0.95067 0.95811 1.03835 1.19875 0.90554 0.87163 1.18972 1.16501 0.83799 0.82868 0.76591 1.90739 1.18599 1.84121 1.50909 1.48601 1.11329 1.06921 1.67078 1.23154 0.79493 1.02224 0.98248 1.22311 0.95152 0.95268 0.98908 0.89747 1.20836 0.85336 0.92360 0.98007 1.42382 1.01324 1.07149 1.86850 1.19189 0.82808 0.93892 1.41281 0.91230 1.24709 0.97835 0.95506 1.02641 1.69646 1.31603 1.00980 1.55721 0.86230 0.85323 0.77465 0.77401 1.21734 1.21807 1.20802 1.21073 0.95316 0.95622 0.94559 1.22475 1.00581 0.80040 0.97434 1.22148 0.97851 0.99570 0.98083 1.22644 0.94276 0.83495 1.01271 1.87908 1.66597 1.32320 1.43383 1.22689 0.92032 1.00025 0.87105 1.22307 0.98416 0.93188 1.04346 0.91023 0.89978 0.88037 0.81579 0.83770 0.82171 0.87977 0.89868 0.95548 0.95852 0.78322 0.93496 0.90061 0.90853 0.90309 0.90997 0.93225 0.89051 0.93428 0.88822 0.89830 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.67 59.85 0.64 1.30 16 2 N -0.42 -5.34 3.16 -120.23 -0.38 -5.72 16 3 C 0.01 0.11 11.37 -16.91 -0.19 -0.08 16 4 C -0.20 -2.67 10.81 -39.98 -0.43 -3.10 16 5 C -0.14 -2.09 9.14 -39.11 -0.36 -2.45 16 6 C -0.05 -0.80 6.79 -81.98 -0.56 -1.35 16 7 C 0.61 9.67 7.82 -12.85 -0.10 9.57 16 8 O -0.56 -9.76 15.14 5.20 0.08 -9.68 16 9 N -0.61 -8.75 3.32 -170.94 -0.57 -9.32 16 10 C 0.09 1.34 5.15 -2.31 -0.01 1.33 16 11 C -0.10 -1.44 2.77 -89.42 -0.25 -1.69 16 12 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 13 C 0.16 2.93 4.38 -4.05 -0.02 2.91 16 14 N -0.73 -17.20 5.44 -59.91 -0.33 -17.52 16 15 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 19 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.06 -0.80 0.69 -154.05 -0.11 -0.90 16 24 C 0.12 1.49 5.09 -2.60 -0.01 1.47 16 25 C -0.14 -1.64 4.68 -26.83 -0.13 -1.76 16 26 C 0.06 0.65 6.64 37.26 0.25 0.90 16 27 O -0.38 -4.71 10.75 -35.23 -0.38 -5.09 16 28 C 0.06 0.61 6.65 37.26 0.25 0.86 16 29 C -0.14 -1.69 3.63 -26.84 -0.10 -1.78 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 32 H 0.10 1.17 6.36 -51.93 -0.33 0.84 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.16 2.41 5.20 -52.49 -0.27 2.14 16 36 H 0.10 1.59 4.57 -51.93 -0.24 1.35 16 37 H 0.08 1.29 7.80 -51.93 -0.41 0.89 16 38 H 0.03 0.50 6.62 -51.93 -0.34 0.15 16 39 H 0.02 0.42 6.88 -51.93 -0.36 0.07 16 40 H 0.38 9.45 7.52 -40.82 -0.31 9.14 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.08 1.04 5.95 -51.93 -0.31 0.74 16 43 H 0.07 0.88 7.78 -51.93 -0.40 0.48 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.53 6.52 -51.93 -0.34 0.19 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.46 7.54 -51.93 -0.39 0.07 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.08 0.95 6.88 -51.93 -0.36 0.59 16 51 H 0.09 1.12 6.60 -51.93 -0.34 0.78 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -32.17 388.52 -9.11 -41.28 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.72 Total: 11.49 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.37 Total: -1.74 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.55 Total: -58.91 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.30 Total: -14.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.17 -9.11 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186331211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.119 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds