Wall clock time and date at job start Wed Apr 1 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35525 * 125.68101 * 2 1 4 4 C 1.35457 * 108.87229 * 180.26245 * 3 2 1 5 5 C 1.39837 * 107.86554 * 359.77032 * 4 3 2 6 6 C 1.37657 * 125.67067 * 179.86692 * 2 1 3 7 7 C 1.46672 * 126.23716 * 0.02562 * 6 2 1 8 8 O 1.21692 * 119.99974 * 16.97657 * 7 6 2 9 9 N 1.34780 * 120.00000 * 196.97635 * 7 6 2 10 10 C 1.48196 * 127.79779 * 356.50055 * 9 7 6 11 11 C 1.54517 * 104.63587 * 140.72177 * 10 9 7 12 12 H 1.08997 * 110.37580 * 264.84530 * 11 10 9 13 13 C 1.52993 * 110.37734 * 142.60425 * 11 10 9 14 14 N 1.46501 * 109.46960 * 66.45518 * 13 11 10 15 15 C 1.36942 * 120.00276 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99440 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00265 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46942 * 90.00066 * 19 17 15 21 21 H 1.48499 * 109.47400 * 209.99921 * 19 17 15 22 22 H 1.48497 * 109.47223 * 330.00092 * 19 17 15 23 23 C 1.53781 * 104.77665 * 23.78195 * 11 10 9 24 24 C 1.48256 * 127.79930 * 176.49642 * 9 7 6 25 25 C 1.52598 * 110.26587 * 240.94816 * 23 11 10 26 26 C 1.53199 * 109.19890 * 182.29781 * 25 23 11 27 27 O 1.42908 * 109.34404 * 56.67753 * 26 25 23 28 28 C 1.42916 * 114.21444 * 298.38687 * 27 26 25 29 29 C 1.52581 * 110.27905 * 118.79153 * 23 11 10 30 30 H 1.09000 * 109.47003 * 265.60413 * 1 2 3 31 31 H 1.08997 * 109.46890 * 25.60536 * 1 2 3 32 32 H 1.09002 * 109.47153 * 145.60437 * 1 2 3 33 33 H 1.08002 * 125.56576 * 359.97438 * 3 2 1 34 34 H 1.07995 * 126.06397 * 179.78527 * 4 3 2 35 35 H 1.07997 * 126.45902 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.40251 * 21.93290 * 10 9 7 37 37 H 1.08999 * 110.49682 * 259.56078 * 10 9 7 38 38 H 1.09001 * 109.47402 * 186.45002 * 13 11 10 39 39 H 1.08995 * 109.47671 * 306.45920 * 13 11 10 40 40 H 0.97005 * 119.99867 * 359.97438 * 14 13 11 41 41 H 0.97000 * 120.00131 * 180.02562 * 18 17 15 42 42 H 1.08996 * 110.42580 * 337.88362 * 24 9 7 43 43 H 1.08997 * 110.42493 * 100.25215 * 24 9 7 44 44 H 1.08996 * 109.51858 * 302.21858 * 25 23 11 45 45 H 1.08998 * 109.51236 * 62.38140 * 25 23 11 46 46 H 1.09000 * 109.49527 * 296.71423 * 26 25 23 47 47 H 1.09005 * 109.49277 * 176.63539 * 26 25 23 48 48 H 1.09005 * 109.49048 * 301.65311 * 28 27 26 49 49 H 1.08997 * 109.51552 * 181.58932 * 28 27 26 50 50 H 1.08997 * 109.52065 * 297.61305 * 29 23 11 51 51 H 1.08998 * 109.51622 * 57.78447 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 -0.0059 5 6 3.5780 -0.6890 -0.0044 6 6 2.2677 -1.1183 0.0026 7 6 1.8122 -2.5125 0.0053 8 8 0.6653 -2.7785 -0.3023 9 7 2.6640 -3.4991 0.3485 10 6 4.1035 -3.3815 0.6807 11 6 4.3157 -4.3673 1.8515 12 1 4.2431 -3.8448 2.8054 13 6 5.6746 -5.0588 1.7261 14 7 6.7428 -4.0722 1.9048 15 6 8.0537 -4.4621 1.8346 16 1 8.3000 -5.4969 1.6479 17 6 9.0659 -3.5274 2.0045 18 7 8.7656 -2.2664 2.2326 19 14 10.8539 -4.0593 1.9094 20 1 11.3287 -3.9509 0.5065 21 1 11.6781 -3.1830 2.7800 22 1 10.9766 -5.4670 2.3661 23 6 3.1782 -5.3927 1.7119 24 6 2.3724 -4.9468 0.4789 25 6 2.2928 -5.3723 2.9546 26 6 1.2038 -6.4408 2.8148 27 8 1.8153 -7.7151 2.6036 28 6 2.5996 -7.7986 1.4118 29 6 3.7500 -6.7898 1.4897 30 1 -0.3633 -0.0788 1.0246 31 1 -0.3633 0.9267 -0.4441 32 1 -0.3633 -0.8480 -0.5805 33 1 1.9083 2.1235 -0.0004 34 1 4.4132 1.3610 -0.0106 35 1 4.4583 -1.3146 -0.0075 36 1 4.3396 -2.3642 0.9928 37 1 4.7169 -3.6682 -0.1735 38 1 5.7615 -5.8308 2.4907 39 1 5.7614 -5.5133 0.7392 40 1 6.5216 -3.1428 2.0729 41 1 9.4729 -1.6132 2.3509 42 1 1.3068 -5.1070 0.6424 43 1 2.7051 -5.4834 -0.4097 44 1 2.8979 -5.5823 3.8365 45 1 1.8292 -4.3910 3.0552 46 1 0.5640 -6.1993 1.9661 47 1 0.6051 -6.4712 3.7252 48 1 1.9743 -7.5712 0.5483 49 1 3.0048 -8.8055 1.3123 50 1 4.3143 -6.8083 0.5574 51 1 4.4072 -7.0505 2.3193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186331211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:59 Heat of formation + Delta-G solvation = -18.171107 kcal Electronic energy + Delta-G solvation = -32354.882268 eV Core-core repulsion = 28255.247530 eV Total energy + Delta-G solvation = -4099.634738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.53367 -41.74491 -39.72870 -38.44248 -36.38015 -34.88581 -33.67636 -33.35674 -32.13874 -30.82122 -30.69318 -27.77764 -27.57681 -26.98626 -25.79688 -24.96211 -23.70277 -23.08821 -21.73645 -21.57854 -20.21539 -19.67906 -18.94261 -18.26318 -17.59227 -17.07429 -17.03514 -16.88677 -16.48174 -16.21261 -16.16351 -15.93250 -15.61338 -15.24589 -15.15707 -15.06013 -14.58537 -14.46156 -14.17909 -13.87821 -13.71535 -13.56167 -13.34598 -13.22793 -13.18205 -12.98381 -12.92881 -12.78104 -12.73144 -12.52722 -12.20740 -12.16573 -12.01099 -11.87119 -11.64697 -11.25530 -11.12412 -11.07691 -10.79973 -10.36606 -9.92888 -9.69037 -9.19084 -8.91959 -7.88987 -5.16787 0.42192 1.47561 1.51769 1.52009 1.60193 1.78430 2.21082 2.25651 2.60157 2.98842 3.23548 3.40678 3.46251 3.54963 3.64924 3.95771 3.98916 4.06382 4.07683 4.16522 4.17673 4.19151 4.27596 4.35642 4.37323 4.43435 4.50833 4.51656 4.56615 4.62816 4.68717 4.69975 4.74562 4.80816 4.81423 4.88034 4.98422 5.02612 5.11366 5.13048 5.17263 5.18976 5.28799 5.41244 5.43254 5.56894 5.79175 5.96215 6.28838 6.29659 6.33020 6.37253 6.96828 7.40399 8.15418 8.38566 9.34163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007251 B = 0.004434 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3860.601294 B = 6313.946748 C = 9717.039733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.418 5.418 3 C 0.032 3.968 4 C -0.228 4.228 5 C -0.156 4.156 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.582 6.582 9 N -0.606 5.606 10 C 0.100 3.900 11 C -0.087 4.087 12 H 0.072 0.928 13 C 0.167 3.833 14 N -0.744 5.744 15 C -0.241 4.241 16 H 0.075 0.925 17 C -0.070 4.070 18 N -0.965 5.965 19 Si 0.965 3.035 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.271 1.271 23 C -0.055 4.055 24 C 0.117 3.883 25 C -0.135 4.135 26 C 0.062 3.938 27 O -0.397 6.397 28 C 0.059 3.941 29 C -0.142 4.142 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.211 0.789 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.106 0.894 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 -0.308 -3.590 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.092 5.092 3 C -0.103 4.103 4 C -0.251 4.251 5 C -0.182 4.182 6 C -0.195 4.195 7 C 0.399 3.601 8 O -0.465 6.465 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.107 4.107 12 H 0.091 0.909 13 C 0.041 3.959 14 N -0.386 5.386 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.262 4.262 18 N -0.616 5.616 19 Si 0.795 3.205 20 H -0.216 1.216 21 H -0.225 1.225 22 H -0.196 1.196 23 C -0.056 4.056 24 C -0.004 4.004 25 C -0.173 4.173 26 C -0.014 4.014 27 O -0.316 6.316 28 C -0.018 4.018 29 C -0.180 4.180 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.124 0.876 48 H 0.078 0.922 49 H 0.127 0.873 50 H 0.106 0.894 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.929 -0.706 -3.676 20.277 hybrid contribution 1.468 0.640 -0.034 1.602 sum -18.461 -0.066 -3.710 18.830 Atomic orbital electron populations 1.22396 0.74834 1.06062 1.04327 1.44077 1.07659 1.04581 1.52856 1.22658 0.89946 0.92590 1.05151 1.21191 0.97534 0.94634 1.11751 1.22051 0.94840 0.96873 1.04437 1.19862 0.91083 0.87536 1.21001 1.16697 0.83629 0.83439 0.76335 1.90716 1.19249 1.84511 1.52049 1.48598 1.10836 1.07564 1.66664 1.22954 0.79836 1.01680 0.97757 1.22136 0.94495 0.95754 0.98301 0.90928 1.20929 0.85416 0.91473 0.98122 1.42575 1.01678 1.07691 1.86706 1.19578 0.84222 0.94044 1.39451 0.90670 1.25439 1.01547 0.95672 1.03574 1.69793 1.32269 1.01903 1.57608 0.85258 0.80819 0.77343 0.77053 1.21564 1.22513 1.19617 1.21004 0.94301 0.95372 0.94945 1.22586 1.00820 0.79149 0.97869 1.22098 0.97999 0.99865 0.97309 1.22690 0.93819 0.82619 1.02285 1.87898 1.66805 1.32797 1.44149 1.22784 0.91516 1.00404 0.87048 1.22274 0.98872 0.92836 1.04007 0.90270 0.86252 0.89923 0.77239 0.82821 0.83522 0.88920 0.90659 0.95407 0.95025 0.79383 0.94121 0.89726 0.89755 0.91012 0.91480 0.92646 0.87627 0.92175 0.87276 0.89408 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 10.67 127.77 1.36 2.50 16 2 N -0.42 -10.18 3.16 -534.31 -1.69 -11.87 16 3 C 0.03 0.67 11.37 83.48 0.95 1.62 16 4 C -0.23 -5.86 10.81 22.01 0.24 -5.63 16 5 C -0.16 -4.74 9.14 22.57 0.21 -4.53 16 6 C -0.08 -2.49 6.79 40.35 0.27 -2.21 16 7 C 0.61 19.40 7.82 86.44 0.68 20.07 16 8 O -0.58 -20.20 15.14 -4.32 -0.07 -20.27 16 9 N -0.61 -17.60 3.32 -812.93 -2.70 -20.30 16 10 C 0.10 3.05 5.15 86.57 0.45 3.50 16 11 C -0.09 -2.63 2.77 -10.02 -0.03 -2.66 16 12 H 0.07 2.38 7.71 -2.39 -0.02 2.36 16 13 C 0.17 6.04 4.38 86.38 0.38 6.42 16 14 N -0.74 -35.44 5.44 -343.46 -1.87 -37.31 16 15 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 16 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.96 -57.24 13.06 21.65 0.28 -56.95 16 19 Si 0.97 45.09 29.55 68.60 2.03 47.11 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.05 -1.32 0.69 -51.89 -0.04 -1.36 16 24 C 0.12 2.89 5.09 86.35 0.44 3.33 16 25 C -0.13 -3.09 4.68 30.53 0.14 -2.95 16 26 C 0.06 1.26 6.64 72.05 0.48 1.74 16 27 O -0.40 -9.03 10.75 -148.98 -1.60 -10.63 16 28 C 0.06 1.12 6.65 72.05 0.48 1.60 16 29 C -0.14 -3.13 3.63 30.52 0.11 -3.02 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.12 1.20 8.12 -2.39 -0.02 1.18 16 32 H 0.08 1.83 6.36 -2.39 -0.02 1.82 16 33 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.15 4.74 5.20 -2.91 -0.02 4.72 16 36 H 0.09 3.06 4.57 -2.39 -0.01 3.05 16 37 H 0.08 2.42 7.80 -2.39 -0.02 2.40 16 38 H 0.03 1.03 6.62 -2.39 -0.02 1.01 16 39 H 0.03 1.12 6.88 -2.39 -0.02 1.11 16 40 H 0.37 19.04 7.52 -92.70 -0.70 18.35 16 41 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.08 2.07 5.95 -2.39 -0.01 2.06 16 43 H 0.08 1.91 7.78 -2.39 -0.02 1.89 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.07 6.52 -2.39 -0.02 1.05 16 47 H 0.11 1.82 8.14 -2.38 -0.02 1.81 16 48 H 0.06 1.01 7.54 -2.38 -0.02 0.99 16 49 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.09 1.86 6.88 -2.39 -0.02 1.84 16 51 H 0.07 1.86 6.60 -2.39 -0.02 1.85 16 Total: -1.00 -69.46 388.52 2.07 -67.39 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.26 Total: 39.86 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 7.42 Total: 2.96 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.97 Total: -126.43 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.67 Total: -30.90 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.46 2.07 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186331211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.216 kcal (2) G-P(sol) polarization free energy of solvation -69.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds