Wall clock time and date at job start Wed Apr 1 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99689 * 2 1 4 4 C 1.50696 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47289 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47004 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47118 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99930 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00665 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47004 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.36943 * 120.00042 * 90.00028 * 13 12 11 15 15 H 1.08000 * 119.99750 * 319.90739 * 14 13 12 16 16 C 1.38805 * 120.00215 * 139.90224 * 14 13 12 17 17 N 1.31624 * 120.00213 * 340.18503 * 16 14 13 18 18 Si 1.86802 * 120.00137 * 160.18279 * 16 14 13 19 19 H 1.48501 * 109.46967 * 60.00027 * 18 16 14 20 20 H 1.48493 * 109.47240 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46986 * 300.00341 * 18 16 14 22 22 C 1.46501 * 120.00191 * 270.00364 * 13 12 11 23 23 C 1.50696 * 109.47332 * 88.02945 * 22 13 12 24 24 C 1.38670 * 120.41592 * 263.14899 * 23 22 13 25 25 C 1.38638 * 118.41921 * 179.78316 * 24 23 22 26 26 C 1.38230 * 119.16023 * 0.50759 * 25 24 23 27 27 N 1.31853 * 120.76025 * 359.73102 * 26 25 24 28 28 C 1.31881 * 121.73210 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47452 * 300.00206 * 1 2 3 31 31 H 1.08999 * 109.46777 * 60.00010 * 1 2 3 32 32 H 1.09002 * 109.47027 * 60.00232 * 4 2 1 33 33 H 1.08998 * 109.47092 * 300.00639 * 4 2 1 34 34 H 1.09002 * 109.47095 * 60.00030 * 5 4 2 35 35 H 1.08996 * 109.46884 * 300.00378 * 5 4 2 36 36 H 1.09000 * 109.47656 * 60.00396 * 6 5 4 37 37 H 1.09005 * 109.47419 * 299.99631 * 6 5 4 38 38 H 0.97001 * 119.99526 * 359.97438 * 9 7 6 39 39 H 1.08993 * 109.46824 * 59.99734 * 10 9 7 40 40 H 1.08996 * 109.46735 * 299.99749 * 10 9 7 41 41 H 1.09002 * 109.47293 * 59.99743 * 11 10 9 42 42 H 1.08996 * 109.47484 * 299.99601 * 11 10 9 43 43 H 1.08998 * 109.47377 * 300.00070 * 12 11 10 44 44 H 1.09002 * 109.47095 * 59.99879 * 12 11 10 45 45 H 0.96994 * 120.00035 * 179.97438 * 17 16 14 46 46 H 1.09005 * 109.46605 * 208.02606 * 22 13 12 47 47 H 1.08994 * 109.47354 * 328.02325 * 22 13 12 48 48 H 1.07996 * 120.79641 * 0.02562 * 24 23 22 49 49 H 1.07996 * 120.42012 * 180.22220 * 25 24 23 50 50 H 1.07993 * 119.61727 * 179.74702 * 26 25 24 51 51 H 1.07998 * 119.62227 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5296 -2.3505 0.0011 7 6 6.0113 -2.0752 0.0022 8 8 6.4156 -0.9317 0.0035 9 7 6.8872 -3.0996 0.0018 10 6 8.3275 -2.8319 0.0024 11 6 9.0924 -4.1569 0.0025 12 6 10.5967 -3.8774 0.0024 13 7 11.3292 -5.1461 0.0031 14 6 11.6716 -5.7396 -1.1826 15 1 10.9751 -5.7384 -2.0080 16 6 12.9138 -6.3428 -1.3235 17 7 13.8955 -6.0266 -0.5057 18 14 13.1924 -7.6032 -2.6738 19 1 12.9469 -6.9741 -3.9964 20 1 14.5922 -8.0946 -2.6111 21 1 12.2592 -8.7431 -2.4870 22 6 11.6953 -5.7798 1.2721 23 6 10.5701 -6.6705 1.7319 24 6 9.6428 -6.2104 2.6547 25 6 8.6218 -7.0631 3.0454 26 6 8.5687 -8.3381 2.5140 27 7 9.4709 -8.7434 1.6420 28 6 10.4522 -7.9577 1.2433 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9972 -1.8770 -0.8892 33 1 1.9971 -1.8763 0.8908 34 1 4.0277 -0.4538 0.8911 35 1 4.0283 -0.4541 -0.8889 36 1 4.2667 -2.9219 -0.8891 37 1 4.2661 -2.9223 0.8909 38 1 6.5638 -4.0141 0.0012 39 1 8.5905 -2.2608 0.8927 40 1 8.5910 -2.2598 -0.8872 41 1 8.8294 -4.7284 -0.8877 42 1 8.8289 -4.7286 0.8922 43 1 10.8600 -3.3059 -0.8876 44 1 10.8600 -3.3057 0.8923 45 1 14.7634 -6.4484 -0.6040 46 1 12.5972 -6.3762 1.1335 47 1 11.8799 -5.0110 2.0223 48 1 9.7119 -5.2104 3.0565 49 1 7.8801 -6.7369 3.7594 50 1 7.7789 -9.0098 2.8162 51 1 11.1725 -8.3248 0.5272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230668469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:44 Heat of formation + Delta-G solvation = -42.822828 kcal Electronic energy + Delta-G solvation = -29665.463738 eV Core-core repulsion = 25564.760021 eV Total energy + Delta-G solvation = -4100.703717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.00056 -39.57939 -39.44548 -36.50534 -35.05605 -34.45476 -32.27960 -32.13097 -31.24655 -31.09659 -29.82904 -28.20850 -25.94511 -25.36422 -23.08992 -22.91969 -22.16597 -21.22690 -20.57634 -20.03879 -19.79851 -17.08756 -16.94222 -16.52719 -16.45883 -16.15303 -15.76512 -15.58885 -15.49027 -15.20107 -14.91227 -14.75988 -14.39875 -13.93702 -13.74101 -13.46167 -13.31081 -13.07975 -12.97496 -12.82920 -12.64888 -12.52870 -12.28668 -12.19050 -12.01397 -11.74674 -11.71962 -11.29935 -11.18929 -11.07110 -11.06008 -10.80098 -10.68597 -10.23912 -10.18984 -10.06552 -9.99085 -9.75188 -9.19569 -8.95914 -8.92439 -8.60712 -8.31062 -6.72511 -5.96050 -3.55848 1.61987 1.69786 1.83148 2.66474 3.18711 3.29780 3.36329 3.39124 3.71288 4.31021 4.42438 4.43277 4.63304 4.64045 4.74996 4.92619 4.93650 4.98509 5.10920 5.15460 5.18443 5.22582 5.25833 5.27856 5.34502 5.43679 5.48841 5.58503 5.61462 5.70392 5.82213 5.83329 5.84289 6.05387 6.08294 6.10332 6.17097 6.36079 6.39223 6.53580 6.57513 6.66204 6.73483 6.94377 7.00875 7.17349 7.27897 7.44179 7.54834 7.69443 8.26267 8.37550 8.54504 9.02001 9.61965 10.21872 11.05006 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.002054 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.315408 B =13627.314687 C =14800.139252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.454 6.454 4 C -0.174 4.174 5 C -0.097 4.097 6 C -0.141 4.141 7 C 0.506 3.494 8 O -0.542 6.542 9 N -0.728 5.728 10 C 0.120 3.880 11 C -0.152 4.152 12 C 0.153 3.847 13 N -0.571 5.571 14 C -0.265 4.265 15 H 0.059 0.941 16 C 0.019 3.981 17 N -0.881 5.881 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.180 3.820 23 C -0.118 4.118 24 C -0.085 4.085 25 C -0.182 4.182 26 C 0.068 3.932 27 N -0.491 5.491 28 C 0.113 3.887 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.259 0.741 46 H 0.102 0.898 47 H 0.037 0.963 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.141 0.859 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.083 3.009 4.955 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.135 4.135 6 C -0.181 4.181 7 C 0.292 3.708 8 O -0.420 6.420 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.193 4.193 12 C 0.025 3.975 13 N -0.289 5.289 14 C -0.394 4.394 15 H 0.077 0.923 16 C -0.183 4.183 17 N -0.522 5.522 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 C 0.053 3.947 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.090 4.090 27 N -0.200 5.200 28 C -0.044 4.044 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.056 0.944 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.158 0.842 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.251 3.532 4.593 22.027 hybrid contribution -0.186 -0.519 -0.327 0.641 sum -21.438 3.012 4.267 22.065 Atomic orbital electron populations 1.22280 0.94618 1.04560 1.04755 1.24657 0.91878 0.90449 0.70431 1.90457 1.71882 1.35235 1.35197 1.22212 0.96647 0.97561 1.04698 1.21150 0.91536 0.95987 1.04873 1.21686 0.92126 0.99964 1.04356 1.20668 0.88679 0.85247 0.76174 1.90723 1.80448 1.21415 1.49382 1.46174 1.07359 1.09238 1.75174 1.21428 0.78394 0.98705 1.01850 1.22549 0.99308 0.95023 1.02411 1.20769 0.88365 0.88707 0.99628 1.43631 1.64162 1.19368 1.01714 1.18924 0.96520 1.32499 0.91467 0.92312 1.25259 0.94802 1.00436 0.97754 1.69986 1.01427 1.41439 1.39305 0.86514 0.77108 0.82010 0.82094 1.20525 1.21432 1.20423 1.19954 0.94096 0.93901 0.86710 1.22292 0.99647 0.96378 0.94009 1.21442 0.93983 0.99193 0.96544 1.21959 0.99907 0.95937 1.02375 1.22470 0.97401 0.94279 0.94815 1.67640 1.03213 1.37491 1.11671 1.22695 0.94719 0.90389 0.96605 0.90022 0.89129 0.89119 0.88240 0.88253 0.90608 0.90601 0.88888 0.88920 0.76711 0.91946 0.91741 0.91830 0.91878 0.92759 0.94507 0.93145 0.88022 0.94428 0.86036 0.86179 0.84159 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.82 10.33 36.01 0.37 -0.45 16 2 C 0.35 2.61 7.27 -29.04 -0.21 2.40 16 3 O -0.45 -5.60 16.72 6.00 0.10 -5.50 16 4 C -0.17 -0.97 5.55 -27.89 -0.15 -1.12 16 5 C -0.10 -0.90 3.79 -26.73 -0.10 -1.01 16 6 C -0.14 -1.15 5.70 -27.89 -0.16 -1.30 16 7 C 0.51 6.47 7.83 -10.99 -0.09 6.39 16 8 O -0.54 -9.39 15.98 5.55 0.09 -9.30 16 9 N -0.73 -8.80 5.56 -60.30 -0.33 -9.13 16 10 C 0.12 1.72 5.67 -4.04 -0.02 1.70 16 11 C -0.15 -2.41 5.62 -26.73 -0.15 -2.56 16 12 C 0.15 2.89 5.71 -4.04 -0.02 2.87 16 13 N -0.57 -12.67 2.39 -174.61 -0.42 -13.08 16 14 C -0.26 -6.58 9.44 -15.06 -0.14 -6.73 16 15 H 0.06 1.49 7.90 -52.49 -0.41 1.08 16 16 C 0.02 0.49 4.95 -17.43 -0.09 0.40 16 17 N -0.88 -23.49 11.59 55.49 0.64 -22.85 16 18 Si 0.89 20.34 29.60 -169.99 -5.03 15.31 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.18 3.79 5.47 -5.19 -0.03 3.76 16 23 C -0.12 -2.20 5.17 -104.48 -0.54 -2.75 16 24 C -0.08 -1.33 8.00 -39.27 -0.31 -1.65 16 25 C -0.18 -2.54 10.11 -39.44 -0.40 -2.93 16 26 C 0.07 1.03 11.18 -17.55 -0.20 0.83 16 27 N -0.49 -9.05 10.36 -13.25 -0.14 -9.19 16 28 C 0.11 2.23 10.89 -17.55 -0.19 2.04 16 29 H 0.08 0.14 8.00 -51.93 -0.42 -0.27 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.86 8.06 -51.93 -0.42 0.45 16 35 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.99 5.85 -51.93 -0.30 0.69 16 43 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 44 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.10 2.45 5.66 -51.93 -0.29 2.16 16 47 H 0.04 0.75 7.83 -51.93 -0.41 0.35 16 48 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 50 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 51 H 0.15 3.19 8.06 -52.49 -0.42 2.77 16 LS Contribution 425.80 15.07 6.42 6.42 Total: -1.00 -32.30 425.80 -9.58 -41.88 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.48 Total: 5.55 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.43 Total: -0.10 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.25 Total: -54.25 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.19 Total: -14.80 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -32.30 -9.58 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230668469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.938 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds