Wall clock time and date at job start Wed Apr 1 2020 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99689 * 2 1 4 4 C 1.50696 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47289 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47004 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47118 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99930 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00665 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47004 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.36943 * 120.00042 * 90.00028 * 13 12 11 15 15 H 1.08000 * 119.99750 * 319.90739 * 14 13 12 16 16 C 1.38805 * 120.00215 * 139.90224 * 14 13 12 17 17 N 1.31624 * 120.00213 * 340.18503 * 16 14 13 18 18 Si 1.86802 * 120.00137 * 160.18279 * 16 14 13 19 19 H 1.48501 * 109.46967 * 60.00027 * 18 16 14 20 20 H 1.48493 * 109.47240 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46986 * 300.00341 * 18 16 14 22 22 C 1.46501 * 120.00191 * 270.00364 * 13 12 11 23 23 C 1.50696 * 109.47332 * 88.02945 * 22 13 12 24 24 C 1.38670 * 120.41592 * 263.14899 * 23 22 13 25 25 C 1.38638 * 118.41921 * 179.78316 * 24 23 22 26 26 C 1.38230 * 119.16023 * 0.50759 * 25 24 23 27 27 N 1.31853 * 120.76025 * 359.73102 * 26 25 24 28 28 C 1.31881 * 121.73210 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47452 * 300.00206 * 1 2 3 31 31 H 1.08999 * 109.46777 * 60.00010 * 1 2 3 32 32 H 1.09002 * 109.47027 * 60.00232 * 4 2 1 33 33 H 1.08998 * 109.47092 * 300.00639 * 4 2 1 34 34 H 1.09002 * 109.47095 * 60.00030 * 5 4 2 35 35 H 1.08996 * 109.46884 * 300.00378 * 5 4 2 36 36 H 1.09000 * 109.47656 * 60.00396 * 6 5 4 37 37 H 1.09005 * 109.47419 * 299.99631 * 6 5 4 38 38 H 0.97001 * 119.99526 * 359.97438 * 9 7 6 39 39 H 1.08993 * 109.46824 * 59.99734 * 10 9 7 40 40 H 1.08996 * 109.46735 * 299.99749 * 10 9 7 41 41 H 1.09002 * 109.47293 * 59.99743 * 11 10 9 42 42 H 1.08996 * 109.47484 * 299.99601 * 11 10 9 43 43 H 1.08998 * 109.47377 * 300.00070 * 12 11 10 44 44 H 1.09002 * 109.47095 * 59.99879 * 12 11 10 45 45 H 0.96994 * 120.00035 * 179.97438 * 17 16 14 46 46 H 1.09005 * 109.46605 * 208.02606 * 22 13 12 47 47 H 1.08994 * 109.47354 * 328.02325 * 22 13 12 48 48 H 1.07996 * 120.79641 * 0.02562 * 24 23 22 49 49 H 1.07996 * 120.42012 * 180.22220 * 25 24 23 50 50 H 1.07993 * 119.61727 * 179.74702 * 26 25 24 51 51 H 1.07998 * 119.62227 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5296 -2.3505 0.0011 7 6 6.0113 -2.0752 0.0022 8 8 6.4156 -0.9317 0.0035 9 7 6.8872 -3.0996 0.0018 10 6 8.3275 -2.8319 0.0024 11 6 9.0924 -4.1569 0.0025 12 6 10.5967 -3.8774 0.0024 13 7 11.3292 -5.1461 0.0031 14 6 11.6716 -5.7396 -1.1826 15 1 10.9751 -5.7384 -2.0080 16 6 12.9138 -6.3428 -1.3235 17 7 13.8955 -6.0266 -0.5057 18 14 13.1924 -7.6032 -2.6738 19 1 12.9469 -6.9741 -3.9964 20 1 14.5922 -8.0946 -2.6111 21 1 12.2592 -8.7431 -2.4870 22 6 11.6953 -5.7798 1.2721 23 6 10.5701 -6.6705 1.7319 24 6 9.6428 -6.2104 2.6547 25 6 8.6218 -7.0631 3.0454 26 6 8.5687 -8.3381 2.5140 27 7 9.4709 -8.7434 1.6420 28 6 10.4522 -7.9577 1.2433 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9972 -1.8770 -0.8892 33 1 1.9971 -1.8763 0.8908 34 1 4.0277 -0.4538 0.8911 35 1 4.0283 -0.4541 -0.8889 36 1 4.2667 -2.9219 -0.8891 37 1 4.2661 -2.9223 0.8909 38 1 6.5638 -4.0141 0.0012 39 1 8.5905 -2.2608 0.8927 40 1 8.5910 -2.2598 -0.8872 41 1 8.8294 -4.7284 -0.8877 42 1 8.8289 -4.7286 0.8922 43 1 10.8600 -3.3059 -0.8876 44 1 10.8600 -3.3057 0.8923 45 1 14.7634 -6.4484 -0.6040 46 1 12.5972 -6.3762 1.1335 47 1 11.8799 -5.0110 2.0223 48 1 9.7119 -5.2104 3.0565 49 1 7.8801 -6.7369 3.7594 50 1 7.7789 -9.0098 2.8162 51 1 11.1725 -8.3248 0.5272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230668469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:43 Heat of formation + Delta-G solvation = -63.107158 kcal Electronic energy + Delta-G solvation = -29666.343333 eV Core-core repulsion = 25564.760021 eV Total energy + Delta-G solvation = -4101.583312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93714 -40.82064 -40.29535 -38.04632 -36.30465 -35.22734 -33.94984 -33.47856 -32.57651 -31.74446 -31.14481 -28.91373 -27.58477 -26.77116 -24.34414 -24.22186 -23.17458 -22.52327 -22.03903 -21.05283 -20.45302 -18.72550 -18.00940 -17.78399 -17.28768 -17.18722 -16.95556 -16.69013 -16.53847 -16.30015 -15.92267 -15.81949 -15.75320 -15.26084 -15.15259 -14.60449 -14.49104 -14.41517 -14.24937 -13.79962 -13.56183 -13.45595 -13.28341 -13.11358 -12.90425 -12.87471 -12.72424 -12.68260 -12.57314 -12.44229 -12.37634 -12.35540 -11.99807 -11.84086 -11.71029 -11.56908 -10.99211 -10.58443 -10.48996 -10.46586 -10.20766 -10.07017 -9.68318 -8.56512 -7.86995 -5.50760 0.40770 0.54239 1.08655 1.44418 1.48368 1.53113 1.68584 2.23984 2.48795 3.03260 3.22988 3.24632 3.72662 3.73818 3.74777 4.06946 4.10506 4.10932 4.13537 4.15636 4.21307 4.30535 4.33327 4.42134 4.49506 4.55272 4.57452 4.65475 4.72017 4.73813 4.75002 4.81648 4.84640 4.90750 4.97687 5.06273 5.08166 5.18377 5.26310 5.30088 5.35828 5.36714 5.45620 5.51410 5.53331 5.69160 5.71220 6.02342 6.46275 6.60564 6.67106 7.14836 7.22946 7.30649 7.80300 8.35006 9.09516 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.002054 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.315408 B =13627.314687 C =14800.139252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.347 3.653 3 O -0.518 6.518 4 C -0.167 4.167 5 C -0.097 4.097 6 C -0.128 4.128 7 C 0.499 3.501 8 O -0.597 6.597 9 N -0.718 5.718 10 C 0.130 3.870 11 C -0.126 4.126 12 C 0.149 3.851 13 N -0.585 5.585 14 C -0.262 4.262 15 H 0.050 0.950 16 C -0.023 4.023 17 N -0.911 5.911 18 Si 0.945 3.055 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.188 3.812 23 C -0.130 4.130 24 C -0.080 4.080 25 C -0.161 4.161 26 C 0.071 3.929 27 N -0.514 5.514 28 C 0.091 3.909 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.253 0.747 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.142 0.858 49 H 0.168 0.832 50 H 0.180 0.820 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.431 1.314 6.554 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.227 3.773 3 O -0.397 6.397 4 C -0.203 4.203 5 C -0.136 4.136 6 C -0.168 4.168 7 C 0.288 3.712 8 O -0.478 6.478 9 N -0.370 5.370 10 C 0.005 3.995 11 C -0.166 4.166 12 C 0.023 3.977 13 N -0.304 5.304 14 C -0.393 4.393 15 H 0.067 0.933 16 C -0.222 4.222 17 N -0.553 5.553 18 Si 0.773 3.227 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.061 3.939 23 C -0.135 4.135 24 C -0.107 4.107 25 C -0.180 4.180 26 C -0.087 4.087 27 N -0.223 5.223 28 C -0.065 4.065 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.251 0.749 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.159 0.841 49 H 0.185 0.815 50 H 0.197 0.803 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.644 1.785 6.189 26.441 hybrid contribution 1.056 0.005 -0.717 1.276 sum -24.588 1.791 5.473 25.253 Atomic orbital electron populations 1.22300 0.91751 1.06783 1.04867 1.25438 0.93685 0.90266 0.67901 1.90453 1.73332 1.37411 1.38453 1.22268 0.93232 0.97117 1.07704 1.21074 0.94737 0.96028 1.01744 1.21727 0.87796 0.99764 1.07469 1.21600 0.90704 0.84289 0.74597 1.90711 1.81591 1.23680 1.51787 1.46036 1.06165 1.10150 1.74645 1.21126 0.79962 0.97381 1.00986 1.22169 0.96864 0.95473 1.02065 1.20841 0.90182 0.87451 0.99253 1.43765 1.64763 1.20536 1.01347 1.19009 0.96036 1.31960 0.92270 0.93251 1.25776 0.94812 1.02045 0.99549 1.70089 1.01542 1.42727 1.40971 0.85714 0.76499 0.80257 0.80259 1.20252 1.21844 1.20488 1.19697 0.93976 0.93858 0.86351 1.21899 0.99848 0.95763 0.95959 1.21666 0.93395 1.00400 0.95222 1.22389 0.99422 0.94626 1.01592 1.23201 0.96860 0.95580 0.93072 1.67606 1.03740 1.37788 1.13158 1.22295 0.95492 0.91276 0.97482 0.86744 0.88886 0.88987 0.85083 0.84839 0.93759 0.94078 0.85770 0.85304 0.74899 0.92238 0.93416 0.93149 0.90990 0.94562 0.93517 0.93731 0.91598 0.93895 0.84065 0.81489 0.80329 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 10.33 71.24 0.74 -0.33 16 2 C 0.35 4.70 7.27 29.10 0.21 4.91 16 3 O -0.52 -13.31 16.72 -1.44 -0.02 -13.33 16 4 C -0.17 -1.29 5.55 29.85 0.17 -1.12 16 5 C -0.10 -1.70 3.79 30.59 0.12 -1.58 16 6 C -0.13 -1.64 5.70 29.85 0.17 -1.47 16 7 C 0.50 12.03 7.83 87.66 0.69 12.71 16 8 O -0.60 -21.04 15.98 -3.06 -0.05 -21.09 16 9 N -0.72 -15.77 5.56 -463.07 -2.57 -18.34 16 10 C 0.13 3.63 5.67 86.38 0.49 4.12 16 11 C -0.13 -3.84 5.62 30.59 0.17 -3.67 16 12 C 0.15 5.71 5.71 86.38 0.49 6.21 16 13 N -0.58 -26.64 2.39 -706.35 -1.69 -28.32 16 14 C -0.26 -13.52 9.44 84.03 0.79 -12.72 16 15 H 0.05 2.59 7.90 -2.91 -0.02 2.57 16 16 C -0.02 -1.23 4.95 84.86 0.42 -0.81 16 17 N -0.91 -50.79 11.59 21.65 0.25 -50.54 16 18 Si 0.94 43.36 29.60 68.60 2.03 45.39 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 C 0.19 8.11 5.47 85.63 0.47 8.58 16 23 C -0.13 -4.79 5.17 -19.77 -0.10 -4.89 16 24 C -0.08 -2.25 8.00 22.47 0.18 -2.07 16 25 C -0.16 -3.64 10.11 22.36 0.23 -3.41 16 26 C 0.07 1.84 11.18 84.69 0.95 2.78 16 27 N -0.51 -18.13 10.36 -195.85 -2.03 -20.16 16 28 C 0.09 3.61 10.89 84.67 0.92 4.53 16 29 H 0.11 -0.14 8.00 -2.39 -0.02 -0.16 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.04 1.03 8.06 -2.39 -0.02 1.01 16 35 H 0.04 0.98 8.06 -2.39 -0.02 0.96 16 36 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.41 6.61 8.47 -92.71 -0.79 5.83 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.09 5.85 -2.39 -0.01 2.07 16 43 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 44 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 45 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 46 H 0.07 3.36 5.66 -2.38 -0.01 3.34 16 47 H 0.04 1.74 7.83 -2.39 -0.02 1.73 16 48 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 49 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 50 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 51 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -78.58 425.80 3.14 -75.43 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.13 Total: 19.21 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.09 Total: 11.75 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -6.04 Total: -117.36 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.07 Total: -34.42 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.58 3.14 -75.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230668469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.326 kcal (2) G-P(sol) polarization free energy of solvation -78.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds