Wall clock time and date at job start Wed Apr 1 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.47043 * 2 1 4 4 C 1.35503 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.39170 * 119.52817 * 179.97438 * 4 3 2 6 6 C 1.37950 * 119.26358 * 179.97438 * 5 4 3 7 7 C 1.40282 * 118.36012 * 359.97438 * 6 5 4 8 8 C 1.47618 * 120.50169 * 179.97438 * 7 6 5 9 9 O 1.21578 * 119.99588 * 36.78824 * 8 7 6 10 10 N 1.34774 * 120.00179 * 216.78992 * 8 7 6 11 11 C 1.46933 * 120.63183 * 6.47490 * 10 8 7 12 12 C 1.53190 * 108.77140 * 126.36985 * 11 10 8 13 13 C 1.53034 * 109.31233 * 54.63979 * 12 11 10 14 14 H 1.09000 * 109.46356 * 58.63983 * 13 12 11 15 15 C 1.53000 * 109.45958 * 178.61231 * 13 12 11 16 16 C 1.53040 * 109.53864 * 298.62874 * 13 12 11 17 17 C 1.46923 * 120.63056 * 186.20096 * 10 8 7 18 18 H 1.09001 * 109.58683 * 113.84145 * 17 10 8 19 19 C 1.52999 * 109.58856 * 353.41686 * 17 10 8 20 20 N 1.46497 * 109.46961 * 69.47682 * 19 17 10 21 21 C 1.36941 * 119.99993 * 175.28613 * 20 19 17 22 22 H 1.08005 * 120.00035 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00398 * 180.02562 * 21 20 19 24 24 N 1.31625 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00294 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47387 * 120.00094 * 25 23 21 28 28 H 1.48499 * 109.47176 * 239.99929 * 25 23 21 29 29 C 1.39529 * 119.00217 * 0.02562 * 7 6 5 30 30 N 1.31668 * 120.62835 * 0.27773 * 29 7 6 31 31 H 1.09000 * 109.46557 * 60.00436 * 1 2 3 32 32 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47125 * 300.00725 * 1 2 3 34 34 H 1.09000 * 109.47125 * 239.99274 * 2 1 3 35 35 H 1.09000 * 109.46557 * 119.99564 * 2 1 3 36 36 H 1.07994 * 120.36711 * 359.95395 * 5 4 3 37 37 H 1.07999 * 120.82307 * 180.02562 * 6 5 4 38 38 H 1.08990 * 109.58709 * 246.15720 * 11 10 8 39 39 H 1.09001 * 109.58364 * 6.44319 * 11 10 8 40 40 H 1.09002 * 109.49453 * 174.59261 * 12 11 10 41 41 H 1.09000 * 109.49869 * 294.65414 * 12 11 10 42 42 H 1.09005 * 109.47463 * 59.99992 * 15 13 12 43 43 H 1.09010 * 109.47348 * 179.97438 * 15 13 12 44 44 H 1.09005 * 109.47321 * 299.99631 * 15 13 12 45 45 H 1.09005 * 109.50028 * 181.31878 * 16 13 12 46 46 H 1.09001 * 109.49964 * 301.38534 * 16 13 12 47 47 H 1.08995 * 109.47687 * 189.48333 * 19 17 10 48 48 H 1.09006 * 109.46972 * 309.48269 * 19 17 10 49 49 H 0.96996 * 120.00352 * 355.28975 * 20 19 17 50 50 H 0.97004 * 119.99864 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.68587 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8711 2.8151 0.0000 6 6 5.2395 2.9896 0.0011 7 6 6.0566 1.8493 0.0033 8 6 7.5269 1.9811 0.0039 9 8 8.0566 2.8762 0.6335 10 7 8.2819 1.1093 -0.6933 11 6 7.6554 0.1111 -1.5709 12 6 8.2698 0.2293 -2.9692 13 6 9.7917 0.1077 -2.8653 14 1 10.0495 -0.8493 -2.4115 15 6 10.4064 0.1905 -4.2639 16 6 10.3382 1.2456 -2.0001 17 6 9.7475 1.1428 -0.5950 18 1 10.1027 0.2292 -0.1183 19 6 10.1786 2.3566 0.2306 20 7 9.7961 2.1558 1.6304 21 6 10.1657 3.0713 2.5793 22 1 10.7388 3.9417 2.2957 23 6 9.8037 2.8809 3.9058 24 7 9.1056 1.8199 4.2516 25 14 10.3072 4.1301 5.2000 26 1 11.0796 5.2240 4.5581 27 1 9.0930 4.6936 5.8431 28 1 11.1488 3.4663 6.2278 29 6 5.4587 0.5886 0.0037 30 7 4.1476 0.4680 -0.0034 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2116 3.6704 -0.0015 37 1 5.6711 3.9796 0.0012 38 1 7.8366 -0.8882 -1.1754 39 1 6.5822 0.2940 -1.6243 40 1 7.8836 -0.5678 -3.6047 41 1 8.0101 1.1962 -3.4002 42 1 10.1484 1.1473 -4.7182 43 1 11.4905 0.1044 -4.1901 44 1 10.0183 -0.6206 -4.8800 45 1 11.4244 1.1720 -1.9457 46 1 10.0600 2.2032 -2.4403 47 1 11.2598 2.4766 0.1630 48 1 9.6890 3.2508 -0.1551 49 1 9.2811 1.3743 1.8852 50 1 8.8523 1.6870 5.1785 51 1 6.0772 -0.2967 0.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264552513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:40 Heat of formation + Delta-G solvation = 15.415612 kcal Electronic energy + Delta-G solvation = -31939.947435 eV Core-core repulsion = 27841.769126 eV Total energy + Delta-G solvation = -4098.178309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92374 -39.92586 -38.06128 -37.15029 -34.52483 -33.77272 -32.45736 -32.35865 -31.83485 -29.94262 -29.79573 -28.14552 -25.44045 -24.50447 -24.25405 -23.07567 -22.72310 -22.32326 -21.32625 -20.06424 -19.18599 -18.55315 -17.37845 -16.78587 -16.49998 -16.39125 -15.47644 -14.99823 -14.83337 -14.58382 -14.40866 -14.35726 -14.03708 -13.98889 -13.80546 -13.43505 -13.22935 -13.12659 -12.83306 -12.77802 -12.66478 -12.45671 -12.31671 -12.08119 -11.91573 -11.72298 -11.70065 -11.54782 -11.03864 -10.89460 -10.84070 -10.71274 -10.69296 -10.40277 -10.22419 -9.86700 -9.82783 -9.73490 -9.49712 -8.74102 -8.53695 -8.22730 -8.07674 -6.51297 -5.54971 -2.74182 0.97240 1.26546 2.92098 3.30917 3.35071 3.55588 3.60383 3.62659 3.94572 4.23365 4.68168 4.69854 4.75318 4.81751 4.83467 4.84267 4.93365 4.95814 5.08422 5.12294 5.17795 5.24627 5.30240 5.45679 5.50691 5.54331 5.59589 5.62374 5.64630 5.67975 5.74693 5.77634 5.79066 5.81220 5.91610 5.92656 6.05719 6.09524 6.11868 6.15029 6.26215 6.38880 6.41099 6.55654 6.68540 6.95218 7.17560 7.30091 7.77811 7.88758 7.93199 8.63114 8.90513 9.74454 10.34206 10.68284 11.68904 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.004176 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.220241 B = 6703.522032 C = 9895.457128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.307 6.307 4 C 0.327 3.673 5 C -0.195 4.195 6 C 0.006 3.994 7 C -0.195 4.195 8 C 0.523 3.477 9 O -0.436 6.436 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.127 4.127 13 C -0.092 4.092 14 H 0.071 0.929 15 C -0.145 4.145 16 C -0.121 4.121 17 C 0.145 3.855 18 H 0.069 0.931 19 C 0.159 3.841 20 N -0.697 5.697 21 C -0.206 4.206 22 H 0.066 0.934 23 C -0.022 4.022 24 N -0.937 5.937 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.164 3.836 30 N -0.544 5.544 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.015 0.985 48 H 0.043 0.957 49 H 0.379 0.621 50 H 0.249 0.751 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -6.476 -18.318 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.215 6.215 4 C 0.149 3.851 5 C -0.215 4.215 6 C -0.020 4.020 7 C -0.201 4.201 8 C 0.308 3.692 9 O -0.304 6.304 10 N -0.349 5.349 11 C -0.023 4.023 12 C -0.166 4.166 13 C -0.110 4.110 14 H 0.089 0.911 15 C -0.202 4.202 16 C -0.160 4.160 17 C 0.042 3.958 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.339 5.339 21 C -0.338 4.338 22 H 0.084 0.916 23 C -0.216 4.216 24 N -0.588 5.588 25 Si 0.734 3.266 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.223 1.223 29 C 0.007 3.993 30 N -0.268 5.268 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.032 0.968 48 H 0.061 0.939 49 H 0.213 0.787 50 H 0.059 0.941 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.902 -6.412 -17.861 21.886 hybrid contribution 0.338 0.816 0.953 1.299 sum -10.564 -5.596 -16.908 20.707 Atomic orbital electron populations 1.21822 0.93165 1.02809 1.03237 1.22602 0.94578 0.81150 1.02662 1.86181 1.17070 1.30674 1.87545 1.19933 0.83831 0.90073 0.91293 1.20961 0.95558 0.95659 1.09363 1.21449 0.91505 0.99292 0.89720 1.21029 0.95922 0.94711 1.08476 1.17884 0.85234 0.84663 0.81409 1.91199 1.70616 1.30583 1.37981 1.47699 1.06143 1.34819 1.46208 1.21972 0.97986 0.92348 0.90011 1.21972 0.95604 1.02310 0.96680 1.21115 0.94787 0.99276 0.95864 0.91066 1.21817 1.00620 1.01507 0.96274 1.21903 1.00366 0.98736 0.95016 1.21404 0.78475 1.00781 0.95189 0.91291 1.20944 0.95334 0.94398 0.86198 1.42273 1.63973 1.26725 1.00948 1.19196 1.25606 1.01409 0.87576 0.91622 1.24618 1.01730 0.98203 0.97095 1.69668 1.44083 1.28568 1.16433 0.86170 0.77427 0.80807 0.82223 1.20802 1.22283 1.22306 1.22791 0.88918 0.96770 0.90784 1.67309 1.06363 1.32794 1.20308 0.91754 0.90363 0.91652 0.91599 0.91474 0.83871 0.83376 0.91650 0.89665 0.91204 0.91615 0.92824 0.92671 0.92941 0.90839 0.91533 0.96767 0.93911 0.78742 0.94093 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.07 0.67 6.02 37.16 0.22 0.89 16 3 O -0.31 -3.96 10.10 -18.20 -0.18 -4.15 16 4 C 0.33 4.66 7.49 -16.96 -0.13 4.53 16 5 C -0.19 -2.65 10.02 -39.34 -0.39 -3.04 16 6 C 0.01 0.09 9.76 -38.92 -0.38 -0.29 16 7 C -0.20 -3.19 5.24 -104.82 -0.55 -3.74 16 8 C 0.52 9.81 6.76 -12.43 -0.08 9.72 16 9 O -0.44 -10.28 10.71 5.30 0.06 -10.22 16 10 N -0.61 -9.52 2.98 -166.66 -0.50 -10.02 16 11 C 0.10 1.15 4.81 -3.71 -0.02 1.14 16 12 C -0.13 -1.24 5.36 -26.62 -0.14 -1.39 16 13 C -0.09 -0.93 2.68 -90.58 -0.24 -1.17 16 14 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 15 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 16 C -0.12 -1.52 4.61 -26.83 -0.12 -1.65 16 17 C 0.14 2.36 2.91 -67.82 -0.20 2.17 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.37 4.86 -4.04 -0.02 3.35 16 20 N -0.70 -18.46 3.24 -59.91 -0.19 -18.65 16 21 C -0.21 -6.08 9.71 -15.06 -0.15 -6.23 16 22 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 24 N -0.94 -29.79 13.06 55.49 0.72 -29.07 16 25 Si 0.90 23.81 29.55 -169.99 -5.02 18.79 16 26 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 C 0.16 2.41 8.54 -17.14 -0.15 2.26 16 30 N -0.54 -7.92 9.18 -12.96 -0.12 -8.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.09 0.95 4.60 -51.93 -0.24 0.71 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.01 0.31 8.12 -51.93 -0.42 -0.11 16 48 H 0.04 0.98 6.29 -51.93 -0.33 0.66 16 49 H 0.38 10.70 7.09 -40.82 -0.29 10.42 16 50 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 51 H 0.17 2.15 6.24 -52.49 -0.33 1.82 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -35.06 400.46 -9.25 -44.31 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.33 Total: 6.85 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.72 Total: 4.16 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.08 Total: -65.77 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.13 Total: -14.37 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.06 -9.25 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.729 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds