Wall clock time and date at job start Wed Apr 1 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.47043 * 2 1 4 4 C 1.35503 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.39170 * 119.52817 * 179.97438 * 4 3 2 6 6 C 1.37950 * 119.26358 * 179.97438 * 5 4 3 7 7 C 1.40282 * 118.36012 * 359.97438 * 6 5 4 8 8 C 1.47618 * 120.50169 * 179.97438 * 7 6 5 9 9 O 1.21578 * 119.99588 * 36.78824 * 8 7 6 10 10 N 1.34774 * 120.00179 * 216.78992 * 8 7 6 11 11 C 1.46933 * 120.63183 * 6.47490 * 10 8 7 12 12 C 1.53190 * 108.77140 * 126.36985 * 11 10 8 13 13 C 1.53034 * 109.31233 * 54.63979 * 12 11 10 14 14 H 1.09000 * 109.46356 * 58.63983 * 13 12 11 15 15 C 1.53000 * 109.45958 * 178.61231 * 13 12 11 16 16 C 1.53040 * 109.53864 * 298.62874 * 13 12 11 17 17 C 1.46923 * 120.63056 * 186.20096 * 10 8 7 18 18 H 1.09001 * 109.58683 * 113.84145 * 17 10 8 19 19 C 1.52999 * 109.58856 * 353.41686 * 17 10 8 20 20 N 1.46497 * 109.46961 * 69.47682 * 19 17 10 21 21 C 1.36941 * 119.99993 * 175.28613 * 20 19 17 22 22 H 1.08005 * 120.00035 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00398 * 180.02562 * 21 20 19 24 24 N 1.31625 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00294 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47387 * 120.00094 * 25 23 21 28 28 H 1.48499 * 109.47176 * 239.99929 * 25 23 21 29 29 C 1.39529 * 119.00217 * 0.02562 * 7 6 5 30 30 N 1.31668 * 120.62835 * 0.27773 * 29 7 6 31 31 H 1.09000 * 109.46557 * 60.00436 * 1 2 3 32 32 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47125 * 300.00725 * 1 2 3 34 34 H 1.09000 * 109.47125 * 239.99274 * 2 1 3 35 35 H 1.09000 * 109.46557 * 119.99564 * 2 1 3 36 36 H 1.07994 * 120.36711 * 359.95395 * 5 4 3 37 37 H 1.07999 * 120.82307 * 180.02562 * 6 5 4 38 38 H 1.08990 * 109.58709 * 246.15720 * 11 10 8 39 39 H 1.09001 * 109.58364 * 6.44319 * 11 10 8 40 40 H 1.09002 * 109.49453 * 174.59261 * 12 11 10 41 41 H 1.09000 * 109.49869 * 294.65414 * 12 11 10 42 42 H 1.09005 * 109.47463 * 59.99992 * 15 13 12 43 43 H 1.09010 * 109.47348 * 179.97438 * 15 13 12 44 44 H 1.09005 * 109.47321 * 299.99631 * 15 13 12 45 45 H 1.09005 * 109.50028 * 181.31878 * 16 13 12 46 46 H 1.09001 * 109.49964 * 301.38534 * 16 13 12 47 47 H 1.08995 * 109.47687 * 189.48333 * 19 17 10 48 48 H 1.09006 * 109.46972 * 309.48269 * 19 17 10 49 49 H 0.96996 * 120.00352 * 355.28975 * 20 19 17 50 50 H 0.97004 * 119.99864 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.68587 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8711 2.8151 0.0000 6 6 5.2395 2.9896 0.0011 7 6 6.0566 1.8493 0.0033 8 6 7.5269 1.9811 0.0039 9 8 8.0566 2.8762 0.6335 10 7 8.2819 1.1093 -0.6933 11 6 7.6554 0.1111 -1.5709 12 6 8.2698 0.2293 -2.9692 13 6 9.7917 0.1077 -2.8653 14 1 10.0495 -0.8493 -2.4115 15 6 10.4064 0.1905 -4.2639 16 6 10.3382 1.2456 -2.0001 17 6 9.7475 1.1428 -0.5950 18 1 10.1027 0.2292 -0.1183 19 6 10.1786 2.3566 0.2306 20 7 9.7961 2.1558 1.6304 21 6 10.1657 3.0713 2.5793 22 1 10.7388 3.9417 2.2957 23 6 9.8037 2.8809 3.9058 24 7 9.1056 1.8199 4.2516 25 14 10.3072 4.1301 5.2000 26 1 11.0796 5.2240 4.5581 27 1 9.0930 4.6936 5.8431 28 1 11.1488 3.4663 6.2278 29 6 5.4587 0.5886 0.0037 30 7 4.1476 0.4680 -0.0034 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2116 3.6704 -0.0015 37 1 5.6711 3.9796 0.0012 38 1 7.8366 -0.8882 -1.1754 39 1 6.5822 0.2940 -1.6243 40 1 7.8836 -0.5678 -3.6047 41 1 8.0101 1.1962 -3.4002 42 1 10.1484 1.1473 -4.7182 43 1 11.4905 0.1044 -4.1901 44 1 10.0183 -0.6206 -4.8800 45 1 11.4244 1.1720 -1.9457 46 1 10.0600 2.2032 -2.4403 47 1 11.2598 2.4766 0.1630 48 1 9.6890 3.2508 -0.1551 49 1 9.2811 1.3743 1.8852 50 1 8.8523 1.6870 5.1785 51 1 6.0772 -0.2967 0.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264552513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:39 Heat of formation + Delta-G solvation = -8.155545 kcal Electronic energy + Delta-G solvation = -31940.969557 eV Core-core repulsion = 27841.769126 eV Total energy + Delta-G solvation = -4099.200431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13815 -41.13445 -39.12048 -38.39358 -36.36395 -34.90382 -33.97309 -33.60714 -32.85033 -31.62544 -30.93208 -29.17102 -27.14288 -25.53153 -25.45330 -24.46433 -24.04541 -23.40294 -22.65247 -21.15467 -20.42390 -19.59946 -19.17435 -18.23907 -17.77659 -17.35109 -16.79265 -16.65032 -16.07667 -15.88821 -15.69709 -15.50127 -15.30987 -15.08125 -14.96059 -14.74403 -14.58352 -14.36989 -14.35065 -13.91456 -13.77600 -13.53934 -13.29045 -13.27903 -13.11671 -12.84197 -12.78264 -12.65890 -12.55307 -12.48839 -12.10168 -12.06022 -11.85391 -11.74361 -11.64830 -11.30997 -11.17841 -11.04632 -10.96698 -10.80595 -9.96772 -9.56846 -9.41445 -8.62927 -7.84147 -5.02819 -0.22237 0.10172 1.43045 1.45263 1.54549 1.92688 1.97703 2.09104 2.61286 2.70684 3.13795 3.49195 3.56524 3.75324 3.78024 3.85161 3.92416 4.00605 4.02683 4.09867 4.10278 4.21429 4.33642 4.33979 4.47100 4.48501 4.53345 4.55930 4.65856 4.69455 4.81942 4.86267 4.87765 4.94242 4.95734 4.96379 5.04841 5.06050 5.14205 5.15099 5.20369 5.26460 5.29412 5.36584 5.45229 5.53620 5.59270 5.84384 6.13181 6.37222 6.59201 6.63257 7.42789 7.49861 8.23577 8.46155 9.40678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.004176 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.220241 B = 6703.522032 C = 9895.457128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.310 6.310 4 C 0.326 3.674 5 C -0.191 4.191 6 C -0.001 4.001 7 C -0.218 4.218 8 C 0.527 3.473 9 O -0.500 6.500 10 N -0.605 5.605 11 C 0.094 3.906 12 C -0.121 4.121 13 C -0.087 4.087 14 H 0.078 0.922 15 C -0.140 4.140 16 C -0.113 4.113 17 C 0.150 3.850 18 H 0.065 0.935 19 C 0.161 3.839 20 N -0.705 5.705 21 C -0.206 4.206 22 H 0.062 0.938 23 C -0.085 4.085 24 N -0.973 5.973 25 Si 0.965 3.035 26 H -0.270 1.270 27 H -0.301 1.301 28 H -0.292 1.292 29 C 0.172 3.828 30 N -0.546 5.546 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.026 0.974 49 H 0.367 0.633 50 H 0.243 0.757 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -7.755 -20.456 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.217 6.217 4 C 0.147 3.853 5 C -0.211 4.211 6 C -0.026 4.026 7 C -0.224 4.224 8 C 0.313 3.687 9 O -0.373 6.373 10 N -0.341 5.341 11 C -0.028 4.028 12 C -0.159 4.159 13 C -0.106 4.106 14 H 0.096 0.904 15 C -0.197 4.197 16 C -0.151 4.151 17 C 0.047 3.953 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.346 5.346 21 C -0.339 4.339 22 H 0.080 0.920 23 C -0.276 4.276 24 N -0.627 5.627 25 Si 0.796 3.204 26 H -0.195 1.195 27 H -0.229 1.229 28 H -0.220 1.220 29 C 0.015 3.985 30 N -0.270 5.270 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.186 0.814 37 H 0.164 0.836 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.032 0.968 48 H 0.043 0.957 49 H 0.198 0.802 50 H 0.052 0.948 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.985 -7.717 -20.085 24.630 hybrid contribution 0.534 1.176 1.472 1.959 sum -11.451 -6.541 -18.613 22.811 Atomic orbital electron populations 1.21838 0.90836 1.04328 1.03393 1.22875 0.96399 0.79844 1.02549 1.86201 1.16079 1.32417 1.87041 1.20184 0.84510 0.90234 0.90382 1.21167 0.95089 0.96498 1.08336 1.21538 0.92268 0.99032 0.89810 1.20946 0.94638 0.96016 1.10826 1.18353 0.86378 0.83759 0.80176 1.91170 1.71913 1.33412 1.40850 1.47827 1.05830 1.34733 1.45733 1.22281 0.98251 0.91776 0.90443 1.21955 0.95259 1.03140 0.95535 1.21100 0.94959 0.98136 0.96381 0.90358 1.21767 1.00770 1.02108 0.95087 1.21847 1.00747 0.99805 0.92743 1.21279 0.79287 0.98036 0.96710 0.91660 1.20968 0.94816 0.96207 0.84520 1.42324 1.63985 1.25718 1.02524 1.19499 1.24436 1.01433 0.88527 0.91997 1.25349 1.02831 1.00333 0.99083 1.69826 1.46115 1.30477 1.16241 0.85163 0.76793 0.78886 0.79605 1.19506 1.22851 1.21965 1.22940 0.89165 0.96506 0.89868 1.67377 1.06091 1.32968 1.20607 0.91200 0.88161 0.91867 0.91062 0.92221 0.81442 0.83641 0.89909 0.89108 0.88195 0.92276 0.93005 0.92382 0.91262 0.90011 0.92228 0.96823 0.95677 0.80162 0.94779 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.06 1.08 6.02 71.98 0.43 1.52 16 3 O -0.31 -7.49 10.10 -88.04 -0.89 -8.38 16 4 C 0.33 8.86 7.49 84.83 0.64 9.50 16 5 C -0.19 -5.01 10.02 22.43 0.22 -4.79 16 6 C 0.00 -0.03 9.76 22.70 0.22 0.20 16 7 C -0.22 -7.22 5.24 -19.99 -0.10 -7.32 16 8 C 0.53 20.39 6.76 86.72 0.59 20.98 16 9 O -0.50 -24.88 10.71 -3.96 -0.04 -24.92 16 10 N -0.61 -18.84 2.98 -799.47 -2.38 -21.22 16 11 C 0.09 1.99 4.81 86.36 0.42 2.40 16 12 C -0.12 -2.00 5.36 30.67 0.16 -1.84 16 13 C -0.09 -1.52 2.68 -10.77 -0.03 -1.55 16 14 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 16 C -0.11 -2.70 4.61 30.53 0.14 -2.56 16 17 C 0.15 4.93 2.91 44.83 0.13 5.06 16 18 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.16 7.11 4.86 86.38 0.42 7.53 16 20 N -0.71 -38.91 3.24 -343.45 -1.11 -40.03 16 21 C -0.21 -12.59 9.71 84.03 0.82 -11.78 16 22 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16 24 N -0.97 -63.94 13.06 21.65 0.28 -63.66 16 25 Si 0.96 50.36 29.55 68.60 2.03 52.39 16 26 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 28 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 29 C 0.17 4.92 8.54 85.03 0.73 5.64 16 30 N -0.55 -15.23 9.18 -307.80 -2.82 -18.06 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.06 1.20 8.10 -2.39 -0.02 1.19 16 36 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.08 1.51 8.07 -2.39 -0.02 1.49 16 39 H 0.09 1.86 4.60 -2.39 -0.01 1.85 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.01 0.61 8.12 -2.39 -0.02 0.59 16 48 H 0.03 1.22 6.29 -2.38 -0.01 1.21 16 49 H 0.37 21.63 7.09 -92.71 -0.66 20.98 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.18 4.46 6.24 -2.91 -0.02 4.44 16 Total: -1.00 -79.14 400.46 1.98 -77.16 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.27 Total: 30.93 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.65 Total: 15.79 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -6.04 Total: -142.97 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.93 Total: -33.30 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.03 Total: 52.39 kcal Total: -79.14 1.98 -77.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.005 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds