Wall clock time and date at job start Wed Apr 1 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47003 * 2 1 4 4 C 1.35433 * 116.99640 * 180.02562 * 3 2 1 5 5 N 1.32230 * 119.80107 * 0.02562 * 4 3 2 6 6 C 1.31881 * 121.80174 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.40752 * 179.97438 * 6 5 4 8 8 C 1.38351 * 121.18520 * 0.02562 * 6 5 4 9 9 C 1.38343 * 119.45964 * 359.97438 * 8 6 5 10 10 C 1.39990 * 118.34351 * 359.75030 * 9 8 6 11 11 C 1.47528 * 120.59273 * 180.26510 * 10 9 8 12 12 O 1.21595 * 119.99871 * 126.91480 * 11 10 9 13 13 N 1.34776 * 120.00122 * 306.90961 * 11 10 9 14 14 C 1.46923 * 120.63091 * 3.62060 * 13 11 10 15 15 C 1.52763 * 109.01063 * 233.58605 * 14 13 11 16 16 C 1.53039 * 109.38085 * 305.58889 * 15 14 13 17 17 C 1.53040 * 109.53842 * 61.23940 * 16 15 14 18 18 H 1.08995 * 109.49818 * 58.58809 * 17 16 15 19 19 C 1.53002 * 109.52292 * 178.66515 * 17 16 15 20 20 N 1.46504 * 109.47184 * 184.85290 * 19 17 16 21 21 C 1.36933 * 120.00064 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00183 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99910 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47142 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46889 * 119.99536 * 25 23 21 28 28 H 1.48500 * 109.47181 * 239.99834 * 25 23 21 29 29 C 1.46923 * 120.62944 * 183.90301 * 13 11 10 30 30 H 1.09000 * 109.47487 * 59.99801 * 1 2 3 31 31 H 1.08994 * 109.47517 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47099 * 299.99661 * 1 2 3 33 33 H 1.08999 * 109.46855 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.46764 * 120.00118 * 2 1 3 35 35 H 1.08996 * 109.47181 * 90.00222 * 7 6 5 36 36 H 1.09003 * 109.46935 * 210.00058 * 7 6 5 37 37 H 1.09000 * 109.47422 * 329.99579 * 7 6 5 38 38 H 1.08000 * 120.27926 * 179.97438 * 8 6 5 39 39 H 1.07995 * 120.82684 * 179.97438 * 9 8 6 40 40 H 1.09004 * 109.58562 * 353.41920 * 14 13 11 41 41 H 1.08994 * 109.58240 * 113.84372 * 14 13 11 42 42 H 1.08994 * 109.56305 * 185.55454 * 15 14 13 43 43 H 1.09000 * 109.35978 * 65.49677 * 15 14 13 44 44 H 1.09004 * 109.46296 * 301.21930 * 16 15 14 45 45 H 1.08997 * 109.44880 * 181.25398 * 16 15 14 46 46 H 1.08994 * 109.47358 * 304.85922 * 19 17 16 47 47 H 1.09002 * 109.47060 * 64.86013 * 19 17 16 48 48 H 0.97002 * 119.99492 * 0.02562 * 20 19 17 49 49 H 0.96996 * 119.99894 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.59069 * 246.15407 * 29 13 11 51 51 H 1.09003 * 109.58993 * 6.43996 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.3264 -0.6353 -0.0031 8 6 6.0626 1.8472 -0.0022 9 6 5.2714 2.9821 -0.0011 10 6 3.8806 2.8227 -0.0059 11 6 2.9901 3.9989 -0.0110 12 8 2.1219 4.1006 -0.8562 13 7 3.1388 4.9608 0.9214 14 6 4.2322 4.8918 1.9003 15 6 3.6485 5.0072 3.3073 16 6 2.7987 6.2765 3.4020 17 6 1.6425 6.1941 2.4027 18 1 1.0389 5.3121 2.6167 19 6 0.7741 7.4482 2.5210 20 7 -0.3951 7.3167 1.6481 21 6 -1.3205 8.3241 1.5868 22 1 -1.1883 9.2158 2.1816 23 6 -2.4287 8.1993 0.7602 24 7 -2.5896 7.1128 0.0349 25 14 -3.6915 9.5732 0.6771 26 1 -3.2824 10.6771 1.5824 27 1 -3.7792 10.0814 -0.7155 28 1 -5.0171 9.0534 1.0988 29 6 2.2069 6.0950 0.9820 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.5337 -0.9333 -1.0309 36 1 7.2645 -0.4234 0.5100 37 1 5.8053 -1.4427 0.5113 38 1 7.1391 1.9342 -0.0026 39 1 5.7157 3.9665 -0.0004 40 1 4.7535 3.9398 1.7994 41 1 4.9289 5.7122 1.7282 42 1 4.4581 5.0562 4.0354 43 1 3.0260 4.1364 3.5127 44 1 3.4161 7.1449 3.1721 45 1 2.3998 6.3716 4.4119 46 1 0.4454 7.5665 3.5534 47 1 1.3542 8.3213 2.2221 48 1 -0.5136 6.5160 1.1136 49 1 -3.3638 7.0257 -0.5430 50 1 2.7350 7.0156 0.7336 51 1 1.3934 5.9379 0.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265631209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:43 Heat of formation + Delta-G solvation = -29.569965 kcal Electronic energy + Delta-G solvation = -31462.289199 eV Core-core repulsion = 27362.160169 eV Total energy + Delta-G solvation = -4100.129030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22491 -39.67202 -38.33716 -37.42001 -34.93517 -33.60647 -32.67587 -32.36132 -31.65088 -31.08040 -29.72677 -28.29370 -25.54990 -25.38795 -24.10854 -23.10899 -23.03560 -22.35356 -21.33112 -20.35070 -19.29926 -18.39274 -17.42127 -16.94608 -16.87686 -16.48186 -15.85371 -15.18560 -14.89224 -14.66943 -14.58620 -14.42847 -14.24498 -14.18310 -13.80047 -13.46535 -13.37389 -13.25928 -12.87848 -12.85665 -12.74261 -12.61482 -12.46983 -12.44774 -12.22897 -12.10501 -11.58258 -11.47293 -11.06081 -10.99689 -10.82292 -10.79665 -10.61476 -10.34833 -10.24954 -10.21819 -10.01360 -9.91389 -9.58626 -9.46050 -8.81097 -8.64261 -8.41039 -6.83387 -5.66295 -2.96079 0.58761 0.99060 2.73037 2.87635 3.07344 3.48638 3.49196 3.53852 3.56840 3.83550 4.35972 4.45594 4.64350 4.69510 4.77671 4.83903 4.93557 4.93956 4.97337 5.01582 5.09799 5.15691 5.19882 5.25251 5.27311 5.36789 5.47140 5.55331 5.60731 5.62610 5.66849 5.69525 5.73480 5.80709 5.84929 5.88889 6.01130 6.06007 6.14405 6.15978 6.17891 6.25800 6.44479 6.60203 6.70983 6.82542 6.93654 7.10494 7.49557 7.60307 7.78029 8.35326 8.51189 9.62181 10.20598 10.54874 11.55990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002882 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.421498 B = 9712.538204 C =11101.747063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 O -0.284 6.284 4 C 0.373 3.627 5 N -0.542 5.542 6 C 0.183 3.817 7 C -0.107 4.107 8 C -0.219 4.219 9 C -0.010 4.010 10 C -0.202 4.202 11 C 0.567 3.433 12 O -0.510 6.510 13 N -0.605 5.605 14 C 0.101 3.899 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.107 4.107 18 H 0.074 0.926 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.123 3.877 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.021 0.979 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.066 0.934 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.956 -16.083 4.040 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 O -0.189 6.189 4 C 0.193 3.807 5 N -0.268 5.268 6 C 0.046 3.954 7 C -0.164 4.164 8 C -0.239 4.239 9 C -0.036 4.036 10 C -0.208 4.208 11 C 0.353 3.647 12 O -0.385 6.385 13 N -0.339 5.339 14 C -0.022 4.022 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.127 4.127 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C 0.001 3.999 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.745 -16.501 3.595 27.532 hybrid contribution -0.359 1.094 -0.181 1.166 sum 21.386 -15.406 3.414 26.577 Atomic orbital electron populations 1.21831 0.92542 1.02698 1.04224 1.22679 0.95341 0.80623 1.02162 1.86411 1.15786 1.30790 1.85913 1.19639 0.84493 0.88163 0.88390 1.67250 1.05983 1.32452 1.21102 1.21122 0.88768 0.95302 0.90232 1.20797 0.97929 0.94189 1.03486 1.21687 1.01403 0.92175 1.08684 1.21583 0.90808 1.00006 0.91184 1.19907 0.94537 0.92645 1.13686 1.17799 0.83556 0.81604 0.81740 1.90876 1.33757 1.77175 1.36662 1.48065 1.30370 1.24232 1.31240 1.21832 0.89357 1.02265 0.88764 1.21834 0.99990 0.99394 0.95966 1.21517 0.96719 0.97057 0.99663 1.21691 0.96251 1.00639 0.94121 0.90797 1.20626 0.88379 0.93319 0.94369 1.42431 1.22888 1.21619 1.50853 1.19243 1.00313 0.97057 1.20579 0.91201 1.24766 0.98882 0.97636 0.99718 1.69690 1.30247 1.26984 1.30746 0.86142 0.81631 0.81333 0.77221 1.20623 1.21900 1.21947 1.21734 0.93076 0.86738 0.98319 0.91121 0.90332 0.91336 0.91588 0.91686 0.89902 0.90175 0.90254 0.83986 0.83559 0.89992 0.91249 0.90916 0.91636 0.91723 0.91527 0.96096 0.96254 0.78052 0.93556 0.91539 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.07 0.82 6.03 37.16 0.22 1.05 16 3 O -0.28 -4.60 9.31 -21.64 -0.20 -4.80 16 4 C 0.37 5.50 7.49 -16.61 -0.12 5.37 16 5 N -0.54 -6.71 9.11 -9.21 -0.08 -6.80 16 6 C 0.18 1.71 6.78 -82.53 -0.56 1.15 16 7 C -0.11 -0.60 10.16 36.00 0.37 -0.23 16 8 C -0.22 -1.77 9.71 -39.50 -0.38 -2.15 16 9 C -0.01 -0.10 7.55 -38.89 -0.29 -0.40 16 10 C -0.20 -2.85 4.93 -104.69 -0.52 -3.36 16 11 C 0.57 9.86 6.90 -12.47 -0.09 9.78 16 12 O -0.51 -11.37 16.17 1.63 0.03 -11.35 16 13 N -0.61 -9.18 2.98 -174.26 -0.52 -9.70 16 14 C 0.10 1.08 5.49 -3.93 -0.02 1.06 16 15 C -0.13 -1.41 6.07 -26.83 -0.16 -1.57 16 16 C -0.11 -1.40 5.17 -26.69 -0.14 -1.54 16 17 C -0.11 -1.82 2.37 -90.50 -0.21 -2.04 16 18 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.16 3.32 5.66 -4.04 -0.02 3.29 16 20 N -0.73 -19.37 5.38 -59.90 -0.32 -19.69 16 21 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -29.45 13.06 55.49 0.72 -28.72 16 25 Si 0.91 23.16 29.55 -169.99 -5.02 18.13 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 C 0.12 2.16 5.51 -3.71 -0.02 2.14 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.15 1.11 7.36 -52.49 -0.39 0.72 16 40 H 0.08 0.77 4.71 -51.93 -0.24 0.52 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.39 10.94 6.90 -40.82 -0.28 10.66 16 49 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.10 2.30 6.23 -51.93 -0.32 1.98 16 LS Contribution 410.11 15.07 6.18 6.18 Total: -1.00 -36.69 410.11 -9.42 -46.11 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.38 Total: 7.09 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.82 Total: 3.54 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.20 Total: -64.91 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.18 Total: -16.15 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.69 -9.42 -46.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265631209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.542 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds