Wall clock time and date at job start Wed Apr 1 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47003 * 2 1 4 4 C 1.35433 * 116.99640 * 180.02562 * 3 2 1 5 5 N 1.32230 * 119.80107 * 0.02562 * 4 3 2 6 6 C 1.31881 * 121.80174 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.40752 * 179.97438 * 6 5 4 8 8 C 1.38351 * 121.18520 * 0.02562 * 6 5 4 9 9 C 1.38343 * 119.45964 * 359.97438 * 8 6 5 10 10 C 1.39990 * 118.34351 * 359.75030 * 9 8 6 11 11 C 1.47528 * 120.59273 * 180.26510 * 10 9 8 12 12 O 1.21595 * 119.99871 * 126.91480 * 11 10 9 13 13 N 1.34776 * 120.00122 * 306.90961 * 11 10 9 14 14 C 1.46923 * 120.63091 * 3.62060 * 13 11 10 15 15 C 1.52763 * 109.01063 * 233.58605 * 14 13 11 16 16 C 1.53039 * 109.38085 * 305.58889 * 15 14 13 17 17 C 1.53040 * 109.53842 * 61.23940 * 16 15 14 18 18 H 1.08995 * 109.49818 * 58.58809 * 17 16 15 19 19 C 1.53002 * 109.52292 * 178.66515 * 17 16 15 20 20 N 1.46504 * 109.47184 * 184.85290 * 19 17 16 21 21 C 1.36933 * 120.00064 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00183 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99910 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47142 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46889 * 119.99536 * 25 23 21 28 28 H 1.48500 * 109.47181 * 239.99834 * 25 23 21 29 29 C 1.46923 * 120.62944 * 183.90301 * 13 11 10 30 30 H 1.09000 * 109.47487 * 59.99801 * 1 2 3 31 31 H 1.08994 * 109.47517 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47099 * 299.99661 * 1 2 3 33 33 H 1.08999 * 109.46855 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.46764 * 120.00118 * 2 1 3 35 35 H 1.08996 * 109.47181 * 90.00222 * 7 6 5 36 36 H 1.09003 * 109.46935 * 210.00058 * 7 6 5 37 37 H 1.09000 * 109.47422 * 329.99579 * 7 6 5 38 38 H 1.08000 * 120.27926 * 179.97438 * 8 6 5 39 39 H 1.07995 * 120.82684 * 179.97438 * 9 8 6 40 40 H 1.09004 * 109.58562 * 353.41920 * 14 13 11 41 41 H 1.08994 * 109.58240 * 113.84372 * 14 13 11 42 42 H 1.08994 * 109.56305 * 185.55454 * 15 14 13 43 43 H 1.09000 * 109.35978 * 65.49677 * 15 14 13 44 44 H 1.09004 * 109.46296 * 301.21930 * 16 15 14 45 45 H 1.08997 * 109.44880 * 181.25398 * 16 15 14 46 46 H 1.08994 * 109.47358 * 304.85922 * 19 17 16 47 47 H 1.09002 * 109.47060 * 64.86013 * 19 17 16 48 48 H 0.97002 * 119.99492 * 0.02562 * 20 19 17 49 49 H 0.96996 * 119.99894 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.59069 * 246.15407 * 29 13 11 51 51 H 1.09003 * 109.58993 * 6.43996 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.3264 -0.6353 -0.0031 8 6 6.0626 1.8472 -0.0022 9 6 5.2714 2.9821 -0.0011 10 6 3.8806 2.8227 -0.0059 11 6 2.9901 3.9989 -0.0110 12 8 2.1219 4.1006 -0.8562 13 7 3.1388 4.9608 0.9214 14 6 4.2322 4.8918 1.9003 15 6 3.6485 5.0072 3.3073 16 6 2.7987 6.2765 3.4020 17 6 1.6425 6.1941 2.4027 18 1 1.0389 5.3121 2.6167 19 6 0.7741 7.4482 2.5210 20 7 -0.3951 7.3167 1.6481 21 6 -1.3205 8.3241 1.5868 22 1 -1.1883 9.2158 2.1816 23 6 -2.4287 8.1993 0.7602 24 7 -2.5896 7.1128 0.0349 25 14 -3.6915 9.5732 0.6771 26 1 -3.2824 10.6771 1.5824 27 1 -3.7792 10.0814 -0.7155 28 1 -5.0171 9.0534 1.0988 29 6 2.2069 6.0950 0.9820 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.5337 -0.9333 -1.0309 36 1 7.2645 -0.4234 0.5100 37 1 5.8053 -1.4427 0.5113 38 1 7.1391 1.9342 -0.0026 39 1 5.7157 3.9665 -0.0004 40 1 4.7535 3.9398 1.7994 41 1 4.9289 5.7122 1.7282 42 1 4.4581 5.0562 4.0354 43 1 3.0260 4.1364 3.5127 44 1 3.4161 7.1449 3.1721 45 1 2.3998 6.3716 4.4119 46 1 0.4454 7.5665 3.5534 47 1 1.3542 8.3213 2.2221 48 1 -0.5136 6.5160 1.1136 49 1 -3.3638 7.0257 -0.5430 50 1 2.7350 7.0156 0.7336 51 1 1.3934 5.9379 0.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265631209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:42 Heat of formation + Delta-G solvation = -56.282355 kcal Electronic energy + Delta-G solvation = -31463.447535 eV Core-core repulsion = 27362.160169 eV Total energy + Delta-G solvation = -4101.287366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19620 -40.84438 -39.28653 -38.78906 -36.65464 -34.87139 -33.88525 -33.30594 -33.10108 -31.94812 -31.45319 -29.12789 -27.26141 -26.51017 -25.13294 -24.74928 -23.95627 -23.28652 -22.63408 -21.68040 -20.47307 -19.35296 -19.18706 -18.37950 -17.90363 -17.50503 -17.05036 -16.72246 -16.20258 -16.04976 -15.48238 -15.42819 -15.36161 -15.28601 -15.16295 -15.10780 -14.52577 -14.16023 -14.12467 -14.03396 -13.91430 -13.76601 -13.52453 -13.33925 -13.05007 -13.02563 -12.96866 -12.85973 -12.66354 -12.54523 -12.17131 -12.07232 -11.95605 -11.88047 -11.74295 -11.59061 -11.35351 -11.28469 -10.98793 -10.84560 -10.57426 -9.73181 -9.46493 -9.02848 -7.95373 -5.26482 -0.26894 0.18612 1.43658 1.46336 1.51898 1.56452 1.93529 1.93820 2.54282 2.60295 3.04845 3.37402 3.45950 3.68465 3.73696 3.84069 3.87121 3.89058 3.96571 4.05672 4.07795 4.14158 4.21332 4.27333 4.30665 4.38069 4.42947 4.57776 4.68412 4.73317 4.75050 4.78320 4.81343 4.83503 4.86502 4.89331 4.93326 4.97065 5.02429 5.09489 5.12296 5.17426 5.20586 5.32516 5.45197 5.47604 5.49782 5.51665 6.16569 6.24647 6.34248 6.73047 7.08364 7.29697 8.06213 8.28547 9.28418 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002882 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.421498 B = 9712.538204 C =11101.747063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.324 6.324 4 C 0.346 3.654 5 N -0.554 5.554 6 C 0.177 3.823 7 C -0.104 4.104 8 C -0.198 4.198 9 C -0.003 4.003 10 C -0.229 4.229 11 C 0.561 3.439 12 O -0.581 6.581 13 N -0.600 5.600 14 C 0.094 3.906 15 C -0.128 4.128 16 C -0.104 4.104 17 C -0.095 4.095 18 H 0.043 0.957 19 C 0.159 3.841 20 N -0.750 5.750 21 C -0.244 4.244 22 H 0.082 0.918 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.979 3.021 26 H -0.260 1.260 27 H -0.294 1.294 28 H -0.293 1.293 29 C 0.130 3.870 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.031 0.969 48 H 0.369 0.631 49 H 0.249 0.751 50 H 0.079 0.921 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.531 -15.962 6.084 32.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.231 6.231 4 C 0.167 3.833 5 N -0.280 5.280 6 C 0.039 3.961 7 C -0.161 4.161 8 C -0.217 4.217 9 C -0.028 4.028 10 C -0.235 4.235 11 C 0.349 3.651 12 O -0.461 6.461 13 N -0.332 5.332 14 C -0.027 4.027 15 C -0.166 4.166 16 C -0.142 4.142 17 C -0.115 4.115 18 H 0.062 0.938 19 C 0.032 3.968 20 N -0.392 5.392 21 C -0.375 4.375 22 H 0.100 0.900 23 C -0.275 4.275 24 N -0.625 5.625 25 Si 0.807 3.193 26 H -0.184 1.184 27 H -0.222 1.222 28 H -0.221 1.221 29 C 0.007 3.993 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.208 0.792 39 H 0.192 0.808 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.097 0.903 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 26.401 -16.359 5.724 31.581 hybrid contribution -1.619 0.987 -0.774 2.048 sum 24.782 -15.372 4.949 29.580 Atomic orbital electron populations 1.21861 0.92366 1.04290 1.02437 1.22795 0.95497 0.79704 1.02789 1.86371 1.17546 1.32600 1.86581 1.19862 0.84222 0.89127 0.90084 1.67312 1.07443 1.31587 1.21664 1.21991 0.88020 0.97699 0.88389 1.20944 0.98333 0.92234 1.04578 1.22195 1.03427 0.90566 1.05535 1.21936 0.88749 1.02206 0.89905 1.19807 0.95908 0.90781 1.17047 1.18459 0.83136 0.82521 0.80975 1.90826 1.36955 1.78713 1.39608 1.48150 1.30686 1.22802 1.31568 1.22254 0.88279 1.04680 0.87440 1.21841 1.00588 0.97287 0.96849 1.21506 0.95199 0.99207 0.98284 1.21548 0.97210 0.97480 0.95215 0.93839 1.20849 0.87134 0.95493 0.93309 1.42720 1.24411 1.20549 1.51563 1.19730 1.00492 0.97606 1.19702 0.90029 1.25716 1.01476 1.00317 0.99980 1.69897 1.30924 1.29521 1.32110 0.84991 0.78468 0.78640 0.77161 1.18385 1.22174 1.22068 1.21408 0.92333 0.88214 0.97338 0.93142 0.86979 0.92782 0.91174 0.90571 0.88757 0.86897 0.90680 0.79207 0.80807 0.88104 0.87912 0.86583 0.93515 0.89583 0.90574 0.95404 0.95081 0.79977 0.94185 0.90312 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 10.28 71.98 0.74 -3.06 16 2 C 0.07 1.77 6.03 71.98 0.43 2.21 16 3 O -0.32 -11.57 9.31 -83.80 -0.78 -12.35 16 4 C 0.35 10.64 7.49 85.13 0.64 11.27 16 5 N -0.55 -13.43 9.11 -296.06 -2.70 -16.13 16 6 C 0.18 2.77 6.78 42.58 0.29 3.06 16 7 C -0.10 -0.75 10.16 71.24 0.72 -0.03 16 8 C -0.20 -2.30 9.71 22.32 0.22 -2.08 16 9 C 0.00 -0.05 7.55 22.72 0.17 0.13 16 10 C -0.23 -6.58 4.93 -19.91 -0.10 -6.68 16 11 C 0.56 20.85 6.90 86.69 0.60 21.45 16 12 O -0.58 -28.88 16.17 -0.52 -0.01 -28.89 16 13 N -0.60 -18.61 2.98 -823.50 -2.45 -21.07 16 14 C 0.09 1.74 5.49 86.22 0.47 2.22 16 15 C -0.13 -2.30 6.07 30.53 0.19 -2.11 16 16 C -0.10 -2.36 5.17 30.62 0.16 -2.21 16 17 C -0.09 -3.30 2.37 -10.71 -0.03 -3.33 16 18 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 19 C 0.16 6.63 5.66 86.38 0.49 7.12 16 20 N -0.75 -41.53 5.38 -343.44 -1.85 -43.37 16 21 C -0.24 -14.45 9.99 84.04 0.84 -13.61 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 23 C -0.08 -5.11 5.50 84.86 0.47 -4.65 16 24 N -0.97 -65.03 13.06 21.65 0.28 -64.75 16 25 Si 0.98 48.81 29.55 68.60 2.03 50.84 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 29 C 0.13 4.84 5.51 86.36 0.48 5.31 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.73 8.10 -2.39 -0.02 1.72 16 34 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.12 8.07 -2.39 -0.02 0.10 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.17 1.90 7.36 -2.91 -0.02 1.88 16 40 H 0.10 1.53 4.71 -2.39 -0.01 1.52 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.37 22.66 6.90 -92.71 -0.64 22.02 16 49 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 50 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 51 H 0.05 2.27 6.23 -2.39 -0.01 2.26 16 Total: -1.00 -90.44 410.11 1.59 -88.85 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.29 Total: 31.84 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 6.77 Total: 15.03 kcal Atomic # 7 Polarization: -138.60 SS G_CDS: -6.71 Total: -145.31 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.79 Total: -41.24 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -90.44 1.59 -88.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265631209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.570 kcal (2) G-P(sol) polarization free energy of solvation -90.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds