Wall clock time and date at job start Wed Apr 1 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47515 * 2 1 4 4 C 1.35668 * 117.00277 * 179.97438 * 3 2 1 5 5 C 1.38924 * 119.68460 * 180.02562 * 4 3 2 6 6 C 1.38376 * 119.11297 * 180.02562 * 5 4 3 7 7 C 1.38832 * 118.48593 * 359.97438 * 6 5 4 8 8 C 1.38050 * 119.28890 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.58119 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46828 * 124.99977 * 9 8 7 11 11 O 1.21276 * 120.00353 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99998 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64572 * 359.96151 * 12 10 9 14 14 C 1.54321 * 107.26969 * 181.09048 * 13 12 10 15 15 C 1.55153 * 102.94180 * 22.19500 * 14 13 12 16 16 H 1.08994 * 111.03830 * 82.58549 * 15 14 13 17 17 C 1.53003 * 111.00644 * 206.42412 * 15 14 13 18 18 N 1.46496 * 109.46888 * 287.19916 * 17 15 14 19 19 C 1.46505 * 120.00288 * 89.99847 * 18 17 15 20 20 C 1.36939 * 119.99882 * 269.99636 * 18 17 15 21 21 H 1.08003 * 119.99980 * 23.22527 * 20 18 17 22 22 C 1.38817 * 120.00331 * 203.22599 * 20 18 17 23 23 N 1.31622 * 119.99574 * 13.88821 * 22 20 18 24 24 Si 1.86790 * 120.00288 * 193.88362 * 22 20 18 25 25 H 1.48496 * 109.47225 * 89.99963 * 24 22 20 26 26 H 1.48499 * 109.47376 * 210.00333 * 24 22 20 27 27 H 1.48503 * 109.47192 * 330.00234 * 24 22 20 28 28 C 1.47415 * 125.64787 * 180.02562 * 12 10 9 29 29 N 1.31967 * 120.83336 * 0.27327 * 8 7 6 30 30 H 1.09004 * 109.47252 * 299.99715 * 1 2 3 31 31 H 1.08999 * 109.47067 * 59.99900 * 1 2 3 32 32 H 1.09008 * 109.47378 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47136 * 239.99770 * 2 1 3 34 34 H 1.08998 * 109.47265 * 120.00616 * 2 1 3 35 35 H 1.08000 * 120.44125 * 0.04759 * 5 4 3 36 36 H 1.07997 * 120.75746 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.35825 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47378 * 5.00032 * 9 8 7 39 39 H 1.09006 * 109.46975 * 244.99698 * 9 8 7 40 40 H 1.09004 * 109.88183 * 61.67691 * 13 12 10 41 41 H 1.08993 * 110.01262 * 300.58511 * 13 12 10 42 42 H 1.09004 * 110.72052 * 263.83306 * 14 13 12 43 43 H 1.08993 * 110.72335 * 140.56030 * 14 13 12 44 44 H 1.09005 * 109.46834 * 47.19246 * 17 15 14 45 45 H 1.08995 * 109.47184 * 167.19497 * 17 15 14 46 46 H 1.08995 * 109.47171 * 95.16397 * 19 18 17 47 47 H 1.09000 * 109.47049 * 215.16253 * 19 18 17 48 48 H 1.08996 * 109.46875 * 335.15949 * 19 18 17 49 49 H 0.97000 * 119.99644 * 179.97438 * 23 22 20 50 50 H 1.08995 * 110.37012 * 36.99944 * 28 12 10 51 51 H 1.09009 * 110.36691 * 274.67631 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5249 0.0005 5 6 3.8753 2.8116 0.0011 6 6 5.2489 2.9792 0.0011 7 6 6.0539 1.8481 0.0011 8 6 5.4646 0.5997 0.0005 9 6 6.3322 -0.6325 -0.0001 10 6 5.9551 -1.5129 1.1634 11 8 5.0688 -1.1735 1.9184 12 7 6.6021 -2.6781 1.3643 13 6 7.6893 -3.2095 0.5293 14 6 8.0983 -4.5738 1.1235 15 6 6.8380 -4.9961 1.9238 16 1 6.0964 -5.4570 1.2714 17 6 7.2081 -5.9326 3.0758 18 7 7.5630 -7.2491 2.5401 19 6 8.9522 -7.5429 2.1791 20 6 6.5963 -8.2051 2.3767 21 1 5.5612 -7.9143 2.2738 22 6 6.9466 -9.5479 2.3434 23 7 8.1448 -9.9253 2.7361 24 14 5.7175 -10.8192 1.7414 25 1 5.8694 -10.9990 0.2752 26 1 5.9669 -12.1124 2.4273 27 1 4.3390 -10.3566 2.0432 28 6 6.3360 -3.6312 2.4569 29 7 4.1512 0.4717 -0.0054 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2193 3.6695 0.0019 36 1 5.6847 3.9673 0.0020 37 1 7.1297 1.9438 0.0007 38 1 7.3785 -0.3403 0.0896 39 1 6.1862 -1.1792 -0.9317 40 1 8.5390 -2.5270 0.5486 41 1 7.3424 -3.3404 -0.4956 42 1 8.9569 -4.4641 1.7859 43 1 8.3104 -5.2915 0.3311 44 1 8.0580 -5.5207 3.6200 45 1 6.3581 -6.0320 3.7507 46 1 9.4469 -8.0403 3.0133 47 1 8.9705 -8.1941 1.3052 48 1 9.4725 -6.6129 1.9501 49 1 8.3895 -10.8637 2.7132 50 1 5.2679 -3.6764 2.6692 51 1 6.8898 -3.3469 3.3518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267587989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:10 Heat of formation + Delta-G solvation = -12.899543 kcal Electronic energy + Delta-G solvation = -30291.230836 eV Core-core repulsion = 26191.824690 eV Total energy + Delta-G solvation = -4099.406146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95093 -39.83894 -38.33223 -37.44599 -35.33481 -33.35302 -32.47834 -32.26103 -31.24306 -30.37046 -29.25121 -28.21622 -26.00240 -25.38854 -24.17825 -23.28507 -22.71429 -22.11033 -21.19144 -19.80972 -19.23180 -18.43794 -17.17668 -16.79234 -16.58369 -16.37426 -16.22661 -16.12589 -15.16477 -14.97431 -14.59385 -14.35080 -14.09783 -13.89764 -13.63036 -13.58510 -13.32557 -13.14396 -12.84846 -12.75867 -12.63011 -12.54101 -12.26099 -12.13512 -12.00346 -11.90695 -11.67173 -11.34533 -11.05579 -10.90139 -10.87852 -10.75442 -10.45292 -10.32017 -10.08138 -10.04586 -9.88209 -9.82552 -9.81189 -9.65430 -8.63430 -8.55892 -8.49930 -6.73477 -5.72224 -3.19193 0.89300 1.11015 2.70353 2.86230 3.01418 3.38113 3.44958 3.46036 3.60502 3.87142 4.39860 4.48354 4.58006 4.75576 4.84681 4.84998 4.86256 4.86940 4.98289 5.03825 5.07299 5.14915 5.21700 5.24439 5.37764 5.42193 5.47576 5.54155 5.56294 5.66670 5.69280 5.73575 5.84882 5.88671 5.93631 5.99281 6.08764 6.19690 6.23393 6.26452 6.39904 6.53942 6.72866 6.75035 6.90310 7.10253 7.34962 7.61024 7.72513 7.74199 7.81374 8.24869 8.40469 9.24252 9.87744 10.36503 11.32239 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002146 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.112425 B =13043.936903 C =14516.196319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.328 3.672 5 C -0.197 4.197 6 C -0.041 4.041 7 C -0.207 4.207 8 C 0.187 3.813 9 C -0.090 4.090 10 C 0.533 3.467 11 O -0.528 6.528 12 N -0.618 5.618 13 C 0.098 3.902 14 C -0.117 4.117 15 C -0.118 4.118 16 H 0.083 0.917 17 C 0.163 3.837 18 N -0.599 5.599 19 C 0.162 3.838 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.907 5.907 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.112 3.888 29 N -0.512 5.512 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.037 0.963 48 H 0.001 0.999 49 H 0.252 0.748 50 H 0.073 0.927 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 25.100 -8.314 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.149 3.851 5 C -0.217 4.217 6 C -0.067 4.067 7 C -0.228 4.228 8 C 0.049 3.951 9 C -0.130 4.130 10 C 0.320 3.680 11 O -0.404 6.404 12 N -0.353 5.353 13 C -0.025 4.025 14 C -0.155 4.155 15 C -0.140 4.140 16 H 0.101 0.899 17 C 0.034 3.966 18 N -0.322 5.322 19 C 0.017 3.983 20 C -0.384 4.384 21 H 0.085 0.915 22 C -0.197 4.197 23 N -0.552 5.552 24 Si 0.733 3.267 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.011 4.011 29 N -0.235 5.235 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.020 0.980 49 H 0.062 0.938 50 H 0.092 0.908 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.334 24.517 -7.907 26.123 hybrid contribution -0.103 -0.271 -0.441 0.528 sum -4.437 24.246 -8.348 26.024 Atomic orbital electron populations 1.21819 0.93102 1.02984 1.03020 1.22616 0.94531 0.80774 1.02989 1.86195 1.16832 1.31023 1.87654 1.19745 0.84102 0.89695 0.91596 1.21049 0.95932 0.95730 1.09026 1.21324 0.92294 0.99254 0.93811 1.21739 1.01308 0.92479 1.07256 1.20184 0.88697 0.93446 0.92743 1.20631 0.99539 0.93346 0.99506 1.19794 0.81634 0.80482 0.86085 1.90726 1.30274 1.72171 1.47248 1.48573 1.36696 1.20011 1.30012 1.22143 0.89224 0.96394 0.94722 1.22627 0.98553 0.93934 1.00415 1.23212 0.96832 0.93700 1.00230 0.89868 1.20614 0.98146 0.85950 0.91854 1.43850 1.05594 1.09139 1.73587 1.20816 0.83902 0.94331 0.99260 1.19180 0.89293 0.86009 1.43910 0.91480 1.25016 0.96901 0.97213 1.00542 1.70073 1.19838 1.15328 1.49967 0.86277 0.80781 0.81182 0.78449 1.21563 1.21794 1.20490 1.22317 1.01321 0.88051 0.89397 1.67053 1.05797 1.33116 1.17513 0.91706 0.91864 0.90220 0.91759 0.91037 0.84297 0.84112 0.84544 0.87186 0.87009 0.91822 0.91694 0.90909 0.89863 0.94321 0.93188 0.95254 0.94378 0.98044 0.93797 0.90848 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.07 0.76 6.03 37.16 0.22 0.98 16 3 O -0.31 -3.91 10.12 -18.71 -0.19 -4.10 16 4 C 0.33 4.22 7.49 -17.12 -0.13 4.10 16 5 C -0.20 -1.97 10.04 -39.28 -0.39 -2.36 16 6 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 7 C -0.21 -1.87 9.71 -39.43 -0.38 -2.25 16 8 C 0.19 2.19 5.75 -82.60 -0.48 1.71 16 9 C -0.09 -0.91 5.29 -29.04 -0.15 -1.06 16 10 C 0.53 7.56 7.78 -10.98 -0.09 7.48 16 11 O -0.53 -9.63 15.60 5.56 0.09 -9.54 16 12 N -0.62 -8.36 3.33 -170.54 -0.57 -8.93 16 13 C 0.10 1.08 6.49 -3.07 -0.02 1.06 16 14 C -0.12 -1.59 5.09 -24.90 -0.13 -1.72 16 15 C -0.12 -1.90 3.26 -88.48 -0.29 -2.19 16 16 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 17 C 0.16 3.15 5.15 -4.04 -0.02 3.12 16 18 N -0.60 -14.40 2.89 -181.12 -0.52 -14.93 16 19 C 0.16 3.78 8.75 59.85 0.52 4.30 16 20 C -0.25 -6.83 9.65 -15.06 -0.15 -6.98 16 21 H 0.07 1.78 7.87 -52.48 -0.41 1.37 16 22 C 0.00 0.04 5.08 -17.43 -0.09 -0.04 16 23 N -0.91 -26.19 10.77 55.49 0.60 -25.59 16 24 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 C 0.11 1.67 6.38 -2.54 -0.02 1.65 16 29 N -0.51 -7.10 8.09 -9.55 -0.08 -7.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.83 7.94 -52.49 -0.42 0.41 16 38 H 0.11 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.97 7.54 -51.93 -0.39 0.57 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 45 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 46 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16 47 H 0.04 0.96 7.38 -51.93 -0.38 0.58 16 48 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 51 H 0.06 0.94 8.04 -51.92 -0.42 0.52 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -33.83 414.32 -9.65 -43.48 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.60 Total: -2.32 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.60 Total: 6.16 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.57 Total: -56.63 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.10 Total: -13.64 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.83 -9.65 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267587989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.577 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds