Wall clock time and date at job start Wed Apr 1 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47515 * 2 1 4 4 C 1.35668 * 117.00277 * 179.97438 * 3 2 1 5 5 C 1.38924 * 119.68460 * 180.02562 * 4 3 2 6 6 C 1.38376 * 119.11297 * 180.02562 * 5 4 3 7 7 C 1.38832 * 118.48593 * 359.97438 * 6 5 4 8 8 C 1.38050 * 119.28890 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.58119 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46828 * 124.99977 * 9 8 7 11 11 O 1.21276 * 120.00353 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99998 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64572 * 359.96151 * 12 10 9 14 14 C 1.54321 * 107.26969 * 181.09048 * 13 12 10 15 15 C 1.55153 * 102.94180 * 22.19500 * 14 13 12 16 16 H 1.08994 * 111.03830 * 82.58549 * 15 14 13 17 17 C 1.53003 * 111.00644 * 206.42412 * 15 14 13 18 18 N 1.46496 * 109.46888 * 287.19916 * 17 15 14 19 19 C 1.46505 * 120.00288 * 89.99847 * 18 17 15 20 20 C 1.36939 * 119.99882 * 269.99636 * 18 17 15 21 21 H 1.08003 * 119.99980 * 23.22527 * 20 18 17 22 22 C 1.38817 * 120.00331 * 203.22599 * 20 18 17 23 23 N 1.31622 * 119.99574 * 13.88821 * 22 20 18 24 24 Si 1.86790 * 120.00288 * 193.88362 * 22 20 18 25 25 H 1.48496 * 109.47225 * 89.99963 * 24 22 20 26 26 H 1.48499 * 109.47376 * 210.00333 * 24 22 20 27 27 H 1.48503 * 109.47192 * 330.00234 * 24 22 20 28 28 C 1.47415 * 125.64787 * 180.02562 * 12 10 9 29 29 N 1.31967 * 120.83336 * 0.27327 * 8 7 6 30 30 H 1.09004 * 109.47252 * 299.99715 * 1 2 3 31 31 H 1.08999 * 109.47067 * 59.99900 * 1 2 3 32 32 H 1.09008 * 109.47378 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47136 * 239.99770 * 2 1 3 34 34 H 1.08998 * 109.47265 * 120.00616 * 2 1 3 35 35 H 1.08000 * 120.44125 * 0.04759 * 5 4 3 36 36 H 1.07997 * 120.75746 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.35825 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47378 * 5.00032 * 9 8 7 39 39 H 1.09006 * 109.46975 * 244.99698 * 9 8 7 40 40 H 1.09004 * 109.88183 * 61.67691 * 13 12 10 41 41 H 1.08993 * 110.01262 * 300.58511 * 13 12 10 42 42 H 1.09004 * 110.72052 * 263.83306 * 14 13 12 43 43 H 1.08993 * 110.72335 * 140.56030 * 14 13 12 44 44 H 1.09005 * 109.46834 * 47.19246 * 17 15 14 45 45 H 1.08995 * 109.47184 * 167.19497 * 17 15 14 46 46 H 1.08995 * 109.47171 * 95.16397 * 19 18 17 47 47 H 1.09000 * 109.47049 * 215.16253 * 19 18 17 48 48 H 1.08996 * 109.46875 * 335.15949 * 19 18 17 49 49 H 0.97000 * 119.99644 * 179.97438 * 23 22 20 50 50 H 1.08995 * 110.37012 * 36.99944 * 28 12 10 51 51 H 1.09009 * 110.36691 * 274.67631 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5249 0.0005 5 6 3.8753 2.8116 0.0011 6 6 5.2489 2.9792 0.0011 7 6 6.0539 1.8481 0.0011 8 6 5.4646 0.5997 0.0005 9 6 6.3322 -0.6325 -0.0001 10 6 5.9551 -1.5129 1.1634 11 8 5.0688 -1.1735 1.9184 12 7 6.6021 -2.6781 1.3643 13 6 7.6893 -3.2095 0.5293 14 6 8.0983 -4.5738 1.1235 15 6 6.8380 -4.9961 1.9238 16 1 6.0964 -5.4570 1.2714 17 6 7.2081 -5.9326 3.0758 18 7 7.5630 -7.2491 2.5401 19 6 8.9522 -7.5429 2.1791 20 6 6.5963 -8.2051 2.3767 21 1 5.5612 -7.9143 2.2738 22 6 6.9466 -9.5479 2.3434 23 7 8.1448 -9.9253 2.7361 24 14 5.7175 -10.8192 1.7414 25 1 5.8694 -10.9990 0.2752 26 1 5.9669 -12.1124 2.4273 27 1 4.3390 -10.3566 2.0432 28 6 6.3360 -3.6312 2.4569 29 7 4.1512 0.4717 -0.0054 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2193 3.6695 0.0019 36 1 5.6847 3.9673 0.0020 37 1 7.1297 1.9438 0.0007 38 1 7.3785 -0.3403 0.0896 39 1 6.1862 -1.1792 -0.9317 40 1 8.5390 -2.5270 0.5486 41 1 7.3424 -3.3404 -0.4956 42 1 8.9569 -4.4641 1.7859 43 1 8.3104 -5.2915 0.3311 44 1 8.0580 -5.5207 3.6200 45 1 6.3581 -6.0320 3.7507 46 1 9.4469 -8.0403 3.0133 47 1 8.9705 -8.1941 1.3052 48 1 9.4725 -6.6129 1.9501 49 1 8.3895 -10.8637 2.7132 50 1 5.2679 -3.6764 2.6692 51 1 6.8898 -3.3469 3.3518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267587989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:08 Heat of formation + Delta-G solvation = -34.516227 kcal Electronic energy + Delta-G solvation = -30292.168206 eV Core-core repulsion = 26191.824690 eV Total energy + Delta-G solvation = -4100.343516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76918 -40.90824 -39.26513 -38.63705 -37.04924 -34.23613 -33.84205 -33.16672 -32.37672 -31.72277 -30.39466 -29.14152 -27.90084 -26.94027 -25.02629 -24.35802 -23.58942 -22.95499 -22.84163 -21.20110 -20.25923 -19.29154 -18.63342 -18.13308 -17.61771 -17.34094 -17.28180 -16.87595 -16.78163 -16.12628 -15.85455 -15.45546 -15.22654 -15.05211 -14.86973 -14.72240 -14.57630 -14.28586 -13.94435 -13.72145 -13.64542 -13.60888 -13.44583 -13.24669 -12.95333 -12.89427 -12.80569 -12.77464 -12.57868 -12.50738 -12.48470 -12.17642 -11.95877 -11.74821 -11.73997 -11.57474 -11.35768 -10.96160 -10.79573 -10.61560 -10.48773 -9.61254 -9.40838 -8.73192 -7.81104 -5.29738 0.13979 0.40056 1.45624 1.46571 1.55073 1.66453 2.00198 2.07455 2.51219 2.81842 3.10734 3.30660 3.47626 3.71321 3.78343 3.80575 3.99402 3.99896 4.05061 4.15015 4.15320 4.21454 4.34625 4.37562 4.39649 4.47075 4.50082 4.50400 4.62782 4.66293 4.77560 4.81719 4.86705 4.87836 4.88488 4.97707 5.02593 5.05651 5.14059 5.15016 5.25230 5.30032 5.32339 5.39625 5.52359 5.56453 5.65670 5.77419 6.26264 6.35304 6.57872 6.96178 7.18212 7.19592 7.91392 8.33228 9.20854 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002146 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.112425 B =13043.936903 C =14516.196319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.321 6.321 4 C 0.291 3.709 5 C -0.201 4.201 6 C -0.037 4.037 7 C -0.198 4.198 8 C 0.155 3.845 9 C -0.080 4.080 10 C 0.526 3.474 11 O -0.579 6.579 12 N -0.619 5.619 13 C 0.103 3.897 14 C -0.113 4.113 15 C -0.108 4.108 16 H 0.057 0.943 17 C 0.162 3.838 18 N -0.615 5.615 19 C 0.177 3.823 20 C -0.258 4.258 21 H 0.064 0.936 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.963 3.037 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.119 3.881 29 N -0.546 5.546 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.152 0.848 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.035 0.965 46 H -0.001 1.001 47 H 0.011 0.989 48 H 0.044 0.956 49 H 0.248 0.752 50 H 0.050 0.950 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 27.793 -9.774 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.005 4.005 3 O -0.229 6.229 4 C 0.112 3.888 5 C -0.221 4.221 6 C -0.062 4.062 7 C -0.218 4.218 8 C 0.018 3.982 9 C -0.120 4.120 10 C 0.316 3.684 11 O -0.458 6.458 12 N -0.353 5.353 13 C -0.019 4.019 14 C -0.151 4.151 15 C -0.129 4.129 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.338 5.338 19 C 0.032 3.968 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.248 4.248 23 N -0.584 5.584 24 Si 0.792 3.208 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.198 1.198 28 C -0.005 4.005 29 N -0.270 5.270 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.174 0.826 36 H 0.199 0.801 37 H 0.191 0.809 38 H 0.170 0.830 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.018 0.982 47 H 0.030 0.970 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.068 0.932 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.866 27.239 -9.388 28.953 hybrid contribution -0.528 -1.024 0.060 1.154 sum -3.394 26.215 -9.327 28.031 Atomic orbital electron populations 1.21808 0.90773 1.03982 1.03591 1.22565 0.96300 0.80542 1.01132 1.86172 1.17486 1.31129 1.88135 1.20202 0.84067 0.90869 0.93663 1.21413 0.97383 0.95050 1.08261 1.21851 0.91350 1.01017 0.91959 1.22186 1.03246 0.91441 1.04880 1.20653 0.88279 0.95257 0.93971 1.20726 1.01388 0.92135 0.97727 1.20596 0.80658 0.80569 0.86565 1.90709 1.32441 1.73335 1.49315 1.48648 1.37246 1.19644 1.29761 1.22280 0.89610 0.95408 0.94601 1.22590 0.97200 0.95336 0.99997 1.22835 0.97925 0.93339 0.98839 0.92451 1.20737 0.98255 0.84622 0.92861 1.44068 1.05363 1.10237 1.74087 1.20575 0.83820 0.95521 0.96874 1.19436 0.89843 0.86863 1.42716 0.91851 1.25717 0.98604 0.98996 1.01444 1.70225 1.21394 1.15221 1.51528 0.85326 0.79070 0.78639 0.77784 1.21236 1.22177 1.19784 1.22076 0.99980 0.87973 0.90451 1.66974 1.07285 1.34252 1.18493 0.91560 0.90756 0.89004 0.92498 0.93986 0.82634 0.80094 0.80859 0.83002 0.85653 0.87932 0.90093 0.89913 0.90532 0.92542 0.94634 0.98239 0.97014 0.93789 0.94321 0.93166 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.07 1.72 6.03 71.98 0.43 2.16 16 3 O -0.32 -8.51 10.12 -89.85 -0.91 -9.42 16 4 C 0.29 7.62 7.49 84.79 0.63 8.25 16 5 C -0.20 -3.74 10.04 22.47 0.23 -3.52 16 6 C -0.04 -0.48 10.17 22.44 0.23 -0.25 16 7 C -0.20 -2.85 9.71 22.37 0.22 -2.63 16 8 C 0.16 3.35 5.75 42.49 0.24 3.60 16 9 C -0.08 -1.38 5.29 29.10 0.15 -1.22 16 10 C 0.53 14.27 7.78 87.66 0.68 14.95 16 11 O -0.58 -21.50 15.60 -3.02 -0.05 -21.55 16 12 N -0.62 -15.59 3.33 -811.85 -2.70 -18.29 16 13 C 0.10 1.88 6.49 86.73 0.56 2.44 16 14 C -0.11 -2.78 5.09 31.78 0.16 -2.61 16 15 C -0.11 -3.42 3.26 -9.41 -0.03 -3.45 16 16 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 17 C 0.16 6.23 5.15 86.38 0.44 6.68 16 18 N -0.61 -29.72 2.89 -726.93 -2.10 -31.82 16 19 C 0.18 8.27 8.75 127.77 1.12 9.39 16 20 C -0.26 -14.08 9.65 84.03 0.81 -13.27 16 21 H 0.06 3.43 7.87 -2.91 -0.02 3.41 16 22 C -0.05 -2.94 5.08 84.86 0.43 -2.51 16 23 N -0.94 -55.24 10.77 21.65 0.23 -55.00 16 24 Si 0.96 45.38 29.58 68.60 2.03 47.40 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.12 3.51 6.38 86.85 0.55 4.06 16 29 N -0.55 -15.34 8.09 -296.99 -2.40 -17.74 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 34 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.17 1.11 7.94 -2.91 -0.02 1.09 16 38 H 0.15 1.26 7.86 -2.39 -0.02 1.24 16 39 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.89 7.54 -2.38 -0.02 1.87 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 1.97 7.90 -2.38 -0.02 1.95 16 45 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 46 H 0.00 -0.04 7.33 -2.39 -0.02 -0.05 16 47 H 0.01 0.58 7.38 -2.39 -0.02 0.56 16 48 H 0.04 1.64 6.54 -2.39 -0.02 1.62 16 49 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 51 H 0.07 2.03 8.04 -2.38 -0.02 2.01 16 Total: -1.00 -78.51 414.32 2.61 -75.90 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.90 Total: 10.21 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 7.61 Total: 20.31 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -6.97 Total: -122.86 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.96 Total: -30.96 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -78.51 2.61 -75.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267587989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.381 kcal (2) G-P(sol) polarization free energy of solvation -78.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds