Wall clock time and date at job start Wed Apr 1 2020 04:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47086 * 2 1 4 4 C 1.35678 * 116.99978 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.68665 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.11376 * 180.02562 * 5 4 3 7 7 C 1.38830 * 118.48352 * 359.73048 * 6 5 4 8 8 C 1.38045 * 119.28455 * 0.55172 * 7 6 5 9 9 C 1.50707 * 119.57863 * 179.71090 * 8 7 6 10 10 C 1.50697 * 109.47015 * 124.72894 * 9 8 7 11 11 O 1.21281 * 119.99989 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.65086 * 359.95913 * 12 10 9 14 14 C 1.54326 * 107.27420 * 181.09541 * 13 12 10 15 15 C 1.55159 * 102.94150 * 22.19182 * 14 13 12 16 16 H 1.08999 * 111.03590 * 82.58827 * 15 14 13 17 17 C 1.52995 * 111.00344 * 206.42557 * 15 14 13 18 18 H 1.08995 * 109.47597 * 51.53141 * 17 15 14 19 19 C 1.53004 * 109.47251 * 291.53043 * 17 15 14 20 20 N 1.46502 * 109.47173 * 171.53454 * 17 15 14 21 21 C 1.36935 * 119.99915 * 204.99785 * 20 17 15 22 22 H 1.07996 * 120.00338 * 0.02562 * 21 20 17 23 23 C 1.38819 * 119.99732 * 179.97438 * 21 20 17 24 24 N 1.31623 * 119.99882 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00004 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46897 * 60.00114 * 25 23 21 27 27 H 1.48502 * 109.47244 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47361 * 300.00275 * 25 23 21 29 29 C 1.47425 * 125.65028 * 180.02562 * 12 10 9 30 30 N 1.31958 * 120.84317 * 359.43572 * 8 7 6 31 31 H 1.09004 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46836 * 299.99726 * 1 2 3 33 33 H 1.08995 * 109.47232 * 59.99819 * 1 2 3 34 34 H 1.08995 * 109.46956 * 239.99630 * 2 1 3 35 35 H 1.09003 * 109.47418 * 119.99984 * 2 1 3 36 36 H 1.08004 * 120.44246 * 359.97438 * 5 4 3 37 37 H 1.08004 * 120.75441 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.35510 * 180.28936 * 7 6 5 39 39 H 1.09003 * 109.46744 * 4.72805 * 9 8 7 40 40 H 1.08995 * 109.47230 * 244.73401 * 9 8 7 41 41 H 1.08998 * 109.88405 * 300.51405 * 13 12 10 42 42 H 1.09000 * 109.88561 * 61.52511 * 13 12 10 43 43 H 1.08998 * 110.71967 * 263.82817 * 14 13 12 44 44 H 1.09001 * 110.71948 * 140.55274 * 14 13 12 45 45 H 1.09004 * 109.46918 * 65.25117 * 19 17 15 46 46 H 1.09005 * 109.46968 * 305.25549 * 19 17 15 47 47 H 1.08993 * 109.47417 * 185.25214 * 19 17 15 48 48 H 0.97003 * 119.99930 * 24.99558 * 20 17 15 49 49 H 0.96995 * 119.99901 * 180.02562 * 24 23 21 50 50 H 1.09009 * 110.36601 * 36.99350 * 29 12 10 51 51 H 1.09001 * 110.46290 * 274.72435 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2490 2.9792 0.0000 7 6 6.0540 1.8481 0.0063 8 6 5.4646 0.5998 0.0007 9 6 6.3322 -0.6325 0.0009 10 6 5.9549 -1.5122 1.1647 11 8 5.0685 -1.1723 1.9195 12 7 6.6026 -2.6768 1.3669 13 6 7.6905 -3.2082 0.5330 14 6 8.1001 -4.5718 1.1283 15 6 6.8396 -4.9944 1.9283 16 1 6.0986 -5.4562 1.2757 17 6 7.2097 -5.9297 3.0810 18 1 8.0081 -5.4804 3.6715 19 6 7.6849 -7.2705 2.5175 20 7 6.0361 -6.1456 3.9308 21 6 6.1973 -6.4920 5.2458 22 1 7.1896 -6.6056 5.6566 23 6 5.0851 -6.6961 6.0511 24 7 3.8757 -6.5572 5.5506 25 14 5.3050 -7.1679 7.8451 26 1 6.0658 -6.1033 8.5472 27 1 3.9729 -7.3271 8.4819 28 1 6.0510 -8.4490 7.9322 29 6 6.3365 -3.6294 2.4601 30 7 4.1512 0.4718 0.0007 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2194 3.6696 -0.0012 37 1 5.6848 3.9674 0.0001 38 1 7.1297 1.9439 0.0112 39 1 7.3785 -0.3401 0.0904 40 1 6.1864 -1.1796 -0.9305 41 1 7.3418 -3.3405 -0.4912 42 1 8.5389 -2.5239 0.5500 43 1 8.9583 -4.4611 1.7910 44 1 8.3130 -5.2900 0.3364 45 1 8.6111 -7.1233 1.9619 46 1 6.9225 -7.6756 1.8521 47 1 7.8596 -7.9676 3.3369 48 1 5.1447 -6.0432 3.5620 49 1 3.0987 -6.6994 6.1134 50 1 5.2682 -3.6751 2.6718 51 1 6.8882 -3.3450 3.3561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271510702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:51 Heat of formation + Delta-G solvation = -27.969869 kcal Electronic energy + Delta-G solvation = -30529.435034 eV Core-core repulsion = 26429.375389 eV Total energy + Delta-G solvation = -4100.059645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87025 -39.80665 -38.29432 -37.50288 -35.13924 -33.25843 -32.48598 -32.29200 -31.22607 -30.43178 -28.91286 -28.35291 -27.54680 -24.26988 -23.89614 -23.46227 -22.64474 -22.01775 -21.44295 -19.62653 -19.13260 -18.34804 -17.32827 -16.83034 -16.71147 -16.27046 -16.15512 -16.09185 -15.09069 -14.91003 -14.46186 -14.27931 -14.05207 -13.82348 -13.73801 -13.62838 -13.16616 -13.07495 -12.86590 -12.65440 -12.57535 -12.41783 -12.23044 -12.10833 -12.04879 -11.84236 -11.64528 -11.56761 -11.30985 -10.86242 -10.77688 -10.73803 -10.57719 -10.50131 -10.22396 -9.98794 -9.89453 -9.73568 -9.60501 -9.53624 -8.88276 -8.55182 -8.41519 -6.93579 -5.72746 -3.01873 0.96863 1.18722 2.81732 2.95651 3.09298 3.46274 3.50704 3.51915 3.68206 3.94643 4.44996 4.55925 4.65123 4.71712 4.83136 4.91721 4.95130 4.95766 4.96683 5.04764 5.09368 5.19457 5.21070 5.33855 5.36231 5.46461 5.55860 5.58089 5.65061 5.69675 5.76697 5.79868 5.90761 5.91604 5.95059 5.95427 6.00771 6.09838 6.18917 6.28295 6.38021 6.41357 6.44744 6.61703 6.65986 6.86773 7.09269 7.19302 7.70235 7.72268 7.82511 8.37185 8.45204 9.56406 10.13483 10.47824 11.49660 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.002561 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.415823 B =10929.190593 C =12477.655793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.309 6.309 4 C 0.329 3.671 5 C -0.197 4.197 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.186 3.814 9 C -0.089 4.089 10 C 0.530 3.470 11 O -0.519 6.519 12 N -0.622 5.622 13 C 0.100 3.900 14 C -0.124 4.124 15 C -0.102 4.102 16 H 0.079 0.921 17 C 0.185 3.815 18 H 0.048 0.952 19 C -0.164 4.164 20 N -0.724 5.724 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 C 0.123 3.877 30 N -0.510 5.510 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.082 0.918 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 16.164 -18.500 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.149 3.851 5 C -0.217 4.217 6 C -0.067 4.067 7 C -0.228 4.228 8 C 0.048 3.952 9 C -0.129 4.129 10 C 0.317 3.683 11 O -0.394 6.394 12 N -0.358 5.358 13 C -0.023 4.023 14 C -0.163 4.163 15 C -0.122 4.122 16 H 0.098 0.902 17 C 0.074 3.926 18 H 0.066 0.934 19 C -0.224 4.224 20 N -0.366 5.366 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 C 0.001 3.999 30 N -0.233 5.233 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.100 0.900 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.897 15.750 -17.910 24.347 hybrid contribution 0.236 0.211 0.880 0.935 sum 5.132 15.960 -17.030 23.898 Atomic orbital electron populations 1.21817 0.93092 1.03034 1.02964 1.22632 0.94561 0.80699 1.03058 1.86196 1.16785 1.31105 1.87605 1.19753 0.84147 0.89684 0.91501 1.21046 0.95923 0.95740 1.09019 1.21316 0.92306 0.99222 0.93898 1.21722 1.01244 0.92497 1.07356 1.20186 0.88741 0.93439 0.92814 1.20628 0.99462 0.93384 0.99433 1.19781 0.81819 0.80524 0.86169 1.90771 1.29916 1.71760 1.46954 1.48604 1.36515 1.20427 1.30218 1.22051 0.89682 0.95892 0.94684 1.22667 0.98704 0.94837 1.00043 1.22671 0.96539 0.95123 0.97869 0.90224 1.20158 0.91219 0.91828 0.89368 0.93365 1.22444 0.98971 1.00408 1.00579 1.42412 1.02963 1.83253 1.07931 1.19146 0.92470 1.39082 0.86332 0.91309 1.24731 0.95276 1.02671 0.98137 1.69648 0.96844 1.55943 1.35473 0.86304 0.76516 0.78260 0.85304 1.21302 1.21751 1.21362 1.22200 1.02596 0.86376 0.88706 1.67062 1.05767 1.33110 1.17393 0.90168 0.91664 0.91953 0.91819 0.90850 0.84308 0.84153 0.84606 0.87303 0.87155 0.91737 0.91710 0.90380 0.90133 0.94461 0.93670 0.92608 0.78264 0.93476 0.89986 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.07 0.84 6.03 37.16 0.22 1.06 16 3 O -0.31 -4.27 10.12 -18.74 -0.19 -4.46 16 4 C 0.33 4.58 7.49 -17.12 -0.13 4.45 16 5 C -0.20 -2.15 10.04 -39.28 -0.39 -2.54 16 6 C -0.04 -0.38 10.17 -39.31 -0.40 -0.78 16 7 C -0.21 -2.03 9.70 -39.43 -0.38 -2.41 16 8 C 0.19 2.33 5.76 -82.61 -0.48 1.85 16 9 C -0.09 -0.94 5.29 -29.03 -0.15 -1.09 16 10 C 0.53 8.18 7.78 -10.99 -0.09 8.10 16 11 O -0.52 -10.60 15.59 5.56 0.09 -10.52 16 12 N -0.62 -8.92 3.33 -170.53 -0.57 -9.49 16 13 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 14 C -0.12 -1.36 5.79 -24.89 -0.14 -1.50 16 15 C -0.10 -1.57 2.62 -88.49 -0.23 -1.80 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.18 3.44 2.42 -67.93 -0.16 3.28 16 18 H 0.05 0.92 8.00 -51.93 -0.42 0.51 16 19 C -0.16 -2.77 9.29 37.16 0.35 -2.42 16 20 N -0.72 -17.68 4.76 -53.43 -0.25 -17.93 16 21 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.12 2.14 6.03 -2.54 -0.02 2.13 16 30 N -0.51 -7.60 8.08 -9.55 -0.08 -7.68 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.14 0.91 7.94 -52.49 -0.42 0.49 16 39 H 0.11 0.78 7.86 -51.93 -0.41 0.38 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.83 7.98 -51.93 -0.41 0.41 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.38 10.13 7.80 -40.82 -0.32 9.82 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.08 1.72 8.04 -51.92 -0.42 1.30 16 51 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 LS Contribution 419.69 15.07 6.32 6.32 Total: -1.00 -35.24 419.69 -9.54 -44.77 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.67 Total: 8.02 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.89 Total: 1.04 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.17 Total: -62.77 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.10 Total: -14.97 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.24 -9.54 -44.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271510702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.803 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds