Wall clock time and date at job start Wed Apr 1 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47086 * 2 1 4 4 C 1.35678 * 116.99978 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.68665 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.11376 * 180.02562 * 5 4 3 7 7 C 1.38830 * 118.48352 * 359.73048 * 6 5 4 8 8 C 1.38045 * 119.28455 * 0.55172 * 7 6 5 9 9 C 1.50707 * 119.57863 * 179.71090 * 8 7 6 10 10 C 1.50697 * 109.47015 * 124.72894 * 9 8 7 11 11 O 1.21281 * 119.99989 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.65086 * 359.95913 * 12 10 9 14 14 C 1.54326 * 107.27420 * 181.09541 * 13 12 10 15 15 C 1.55159 * 102.94150 * 22.19182 * 14 13 12 16 16 H 1.08999 * 111.03590 * 82.58827 * 15 14 13 17 17 C 1.52995 * 111.00344 * 206.42557 * 15 14 13 18 18 H 1.08995 * 109.47597 * 51.53141 * 17 15 14 19 19 C 1.53004 * 109.47251 * 291.53043 * 17 15 14 20 20 N 1.46502 * 109.47173 * 171.53454 * 17 15 14 21 21 C 1.36935 * 119.99915 * 204.99785 * 20 17 15 22 22 H 1.07996 * 120.00338 * 0.02562 * 21 20 17 23 23 C 1.38819 * 119.99732 * 179.97438 * 21 20 17 24 24 N 1.31623 * 119.99882 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00004 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46897 * 60.00114 * 25 23 21 27 27 H 1.48502 * 109.47244 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47361 * 300.00275 * 25 23 21 29 29 C 1.47425 * 125.65028 * 180.02562 * 12 10 9 30 30 N 1.31958 * 120.84317 * 359.43572 * 8 7 6 31 31 H 1.09004 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46836 * 299.99726 * 1 2 3 33 33 H 1.08995 * 109.47232 * 59.99819 * 1 2 3 34 34 H 1.08995 * 109.46956 * 239.99630 * 2 1 3 35 35 H 1.09003 * 109.47418 * 119.99984 * 2 1 3 36 36 H 1.08004 * 120.44246 * 359.97438 * 5 4 3 37 37 H 1.08004 * 120.75441 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.35510 * 180.28936 * 7 6 5 39 39 H 1.09003 * 109.46744 * 4.72805 * 9 8 7 40 40 H 1.08995 * 109.47230 * 244.73401 * 9 8 7 41 41 H 1.08998 * 109.88405 * 300.51405 * 13 12 10 42 42 H 1.09000 * 109.88561 * 61.52511 * 13 12 10 43 43 H 1.08998 * 110.71967 * 263.82817 * 14 13 12 44 44 H 1.09001 * 110.71948 * 140.55274 * 14 13 12 45 45 H 1.09004 * 109.46918 * 65.25117 * 19 17 15 46 46 H 1.09005 * 109.46968 * 305.25549 * 19 17 15 47 47 H 1.08993 * 109.47417 * 185.25214 * 19 17 15 48 48 H 0.97003 * 119.99930 * 24.99558 * 20 17 15 49 49 H 0.96995 * 119.99901 * 180.02562 * 24 23 21 50 50 H 1.09009 * 110.36601 * 36.99350 * 29 12 10 51 51 H 1.09001 * 110.46290 * 274.72435 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2490 2.9792 0.0000 7 6 6.0540 1.8481 0.0063 8 6 5.4646 0.5998 0.0007 9 6 6.3322 -0.6325 0.0009 10 6 5.9549 -1.5122 1.1647 11 8 5.0685 -1.1723 1.9195 12 7 6.6026 -2.6768 1.3669 13 6 7.6905 -3.2082 0.5330 14 6 8.1001 -4.5718 1.1283 15 6 6.8396 -4.9944 1.9283 16 1 6.0986 -5.4562 1.2757 17 6 7.2097 -5.9297 3.0810 18 1 8.0081 -5.4804 3.6715 19 6 7.6849 -7.2705 2.5175 20 7 6.0361 -6.1456 3.9308 21 6 6.1973 -6.4920 5.2458 22 1 7.1896 -6.6056 5.6566 23 6 5.0851 -6.6961 6.0511 24 7 3.8757 -6.5572 5.5506 25 14 5.3050 -7.1679 7.8451 26 1 6.0658 -6.1033 8.5472 27 1 3.9729 -7.3271 8.4819 28 1 6.0510 -8.4490 7.9322 29 6 6.3365 -3.6294 2.4601 30 7 4.1512 0.4718 0.0007 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2194 3.6696 -0.0012 37 1 5.6848 3.9674 0.0001 38 1 7.1297 1.9439 0.0112 39 1 7.3785 -0.3401 0.0904 40 1 6.1864 -1.1796 -0.9305 41 1 7.3418 -3.3405 -0.4912 42 1 8.5389 -2.5239 0.5500 43 1 8.9583 -4.4611 1.7910 44 1 8.3130 -5.2900 0.3364 45 1 8.6111 -7.1233 1.9619 46 1 6.9225 -7.6756 1.8521 47 1 7.8596 -7.9676 3.3369 48 1 5.1447 -6.0432 3.5620 49 1 3.0987 -6.6994 6.1134 50 1 5.2682 -3.6751 2.6718 51 1 6.8882 -3.3450 3.3561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271510702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:50 Heat of formation + Delta-G solvation = -52.974884 kcal Electronic energy + Delta-G solvation = -30530.519333 eV Core-core repulsion = 26429.375389 eV Total energy + Delta-G solvation = -4101.143943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77679 -40.94591 -39.33449 -38.70664 -36.74646 -34.35970 -34.03835 -33.18066 -32.34239 -31.73771 -30.00059 -29.95678 -28.57942 -25.91812 -25.15039 -24.51362 -23.59395 -22.90629 -22.78534 -21.06611 -20.23499 -19.30439 -19.13857 -18.11543 -17.62896 -17.36527 -17.28680 -16.88407 -16.60326 -16.18731 -15.77821 -15.49668 -15.25908 -15.08522 -14.92395 -14.72335 -14.45476 -14.23099 -13.96966 -13.75427 -13.56121 -13.48281 -13.44676 -13.28002 -13.09328 -12.94493 -12.82335 -12.79691 -12.66145 -12.50047 -12.34451 -12.26587 -12.03146 -11.75797 -11.65962 -11.51953 -11.36576 -10.96323 -10.91474 -10.79291 -10.48987 -9.60846 -9.41441 -8.99337 -7.93058 -5.20715 0.13256 0.39655 1.44207 1.47599 1.53315 1.67638 2.00519 2.06568 2.55787 2.81655 3.10263 3.40066 3.49458 3.72022 3.76855 3.88406 3.91233 3.98053 4.03799 4.14021 4.18164 4.21213 4.33026 4.36590 4.39099 4.45697 4.49750 4.51002 4.58364 4.66442 4.72757 4.79828 4.81025 4.86777 4.89405 4.93614 5.01455 5.04183 5.11489 5.13476 5.17022 5.24007 5.28825 5.39186 5.43234 5.52556 5.56123 5.66773 6.25147 6.28872 6.60553 6.96398 7.22425 7.34260 8.13062 8.33623 9.30547 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.002561 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.415823 B =10929.190593 C =12477.655793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.321 6.321 4 C 0.288 3.712 5 C -0.201 4.201 6 C -0.037 4.037 7 C -0.197 4.197 8 C 0.152 3.848 9 C -0.075 4.075 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.621 5.621 13 C 0.096 3.904 14 C -0.112 4.112 15 C -0.093 4.093 16 H 0.072 0.928 17 C 0.178 3.822 18 H 0.047 0.953 19 C -0.152 4.152 20 N -0.739 5.739 21 C -0.232 4.232 22 H 0.077 0.923 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.969 3.031 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.275 1.275 29 C 0.129 3.871 30 N -0.547 5.547 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.156 0.844 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.368 0.632 49 H 0.248 0.752 50 H 0.027 0.973 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 17.456 -20.858 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.005 4.005 3 O -0.229 6.229 4 C 0.110 3.890 5 C -0.221 4.221 6 C -0.062 4.062 7 C -0.217 4.217 8 C 0.015 3.985 9 C -0.114 4.114 10 C 0.309 3.691 11 O -0.465 6.465 12 N -0.355 5.355 13 C -0.026 4.026 14 C -0.150 4.150 15 C -0.113 4.113 16 H 0.091 0.909 17 C 0.069 3.931 18 H 0.065 0.935 19 C -0.212 4.212 20 N -0.379 5.379 21 C -0.364 4.364 22 H 0.095 0.905 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.798 3.202 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.201 1.201 29 C 0.005 3.995 30 N -0.270 5.270 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.174 0.826 37 H 0.200 0.800 38 H 0.194 0.806 39 H 0.173 0.827 40 H 0.150 0.850 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.199 0.801 49 H 0.056 0.944 50 H 0.045 0.955 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.039 17.025 -20.323 28.010 hybrid contribution -0.903 -0.139 1.577 1.822 sum 8.135 16.886 -18.746 26.509 Atomic orbital electron populations 1.21805 0.90731 1.03964 1.03627 1.22550 0.96355 0.80576 1.01008 1.86168 1.17568 1.31027 1.88153 1.20239 0.84076 0.90956 0.93773 1.21418 0.97468 0.94961 1.08265 1.21865 0.91285 1.01082 0.91990 1.22198 1.03297 0.91374 1.04786 1.20725 0.88282 0.95461 0.94001 1.20724 1.01342 0.91891 0.97458 1.20819 0.80736 0.80793 0.86763 1.90747 1.32818 1.73318 1.49598 1.48713 1.37454 1.19670 1.29661 1.22426 0.89373 0.95849 0.94903 1.22718 0.96064 0.95989 1.00272 1.22490 0.99082 0.92755 0.97007 0.90916 1.20455 0.89078 0.93720 0.89797 0.93532 1.22267 1.00897 0.98004 1.00014 1.42676 1.04120 1.83191 1.07898 1.19575 0.92571 1.36556 0.87660 0.90474 1.25548 0.95158 1.04253 1.02341 1.69829 0.97461 1.58472 1.36647 0.85270 0.75994 0.78384 0.80512 1.20635 1.22654 1.20059 1.21841 0.98881 0.89037 0.89716 1.66984 1.07411 1.34282 1.18365 0.89105 0.91811 0.90345 0.92147 0.94613 0.82624 0.79965 0.80645 0.82743 0.85028 0.88951 0.87908 0.89357 0.86981 0.89947 0.93970 0.94914 0.80078 0.94367 0.95461 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 10.28 71.98 0.74 -2.27 16 2 C 0.07 2.00 6.03 71.98 0.43 2.44 16 3 O -0.32 -9.54 10.12 -89.96 -0.91 -10.45 16 4 C 0.29 8.41 7.49 84.79 0.63 9.04 16 5 C -0.20 -4.24 10.04 22.47 0.23 -4.01 16 6 C -0.04 -0.56 10.17 22.45 0.23 -0.33 16 7 C -0.20 -3.19 9.70 22.37 0.22 -2.98 16 8 C 0.15 3.63 5.76 42.50 0.24 3.87 16 9 C -0.07 -1.39 5.29 29.10 0.15 -1.23 16 10 C 0.52 16.09 7.78 87.66 0.68 16.77 16 11 O -0.59 -25.68 15.59 -3.03 -0.05 -25.73 16 12 N -0.62 -17.37 3.33 -811.84 -2.70 -20.07 16 13 C 0.10 1.50 6.49 86.73 0.56 2.06 16 14 C -0.11 -2.00 5.79 31.78 0.18 -1.81 16 15 C -0.09 -2.82 2.62 -9.41 -0.02 -2.85 16 16 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.18 6.58 2.42 44.99 0.11 6.69 16 18 H 0.05 1.74 8.00 -2.39 -0.02 1.73 16 19 C -0.15 -4.86 9.29 71.98 0.67 -4.19 16 20 N -0.74 -37.50 4.76 -322.94 -1.54 -39.04 16 21 C -0.23 -13.02 9.93 84.04 0.83 -12.19 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 24 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16 25 Si 0.97 47.77 29.55 68.60 2.03 49.79 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 29 C 0.13 4.72 6.03 86.85 0.52 5.25 16 30 N -0.55 -16.98 8.08 -296.98 -2.40 -19.38 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.18 1.35 7.94 -2.91 -0.02 1.33 16 39 H 0.15 1.39 7.86 -2.39 -0.02 1.37 16 40 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.45 7.98 -2.39 -0.02 1.43 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 46 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.37 20.71 7.80 -92.71 -0.72 19.99 16 49 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.03 1.27 8.04 -2.38 -0.02 1.25 16 51 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -87.40 419.69 1.79 -85.61 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.19 Total: 31.40 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.88 Total: 9.91 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -6.35 Total: -140.52 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.96 Total: -36.18 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -87.40 1.79 -85.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271510702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.632 kcal (2) G-P(sol) polarization free energy of solvation -87.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds