Wall clock time and date at job start Wed Apr 1 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46871 * 2 1 4 4 C 1.35430 * 116.99484 * 179.97438 * 3 2 1 5 5 N 1.32228 * 119.80225 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.79874 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.40637 * 179.97438 * 6 5 4 8 8 C 1.38352 * 121.18889 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.45459 * 359.67326 * 8 6 5 10 10 C 1.39983 * 118.34872 * 0.56657 * 9 8 6 11 11 C 1.47529 * 120.59752 * 179.75738 * 10 9 8 12 12 O 1.21591 * 119.99893 * 126.25228 * 11 10 9 13 13 N 1.34773 * 119.99733 * 306.24941 * 11 10 9 14 14 C 1.46933 * 120.62878 * 174.17541 * 13 11 10 15 15 C 1.53195 * 108.77319 * 126.41416 * 14 13 11 16 16 C 1.53033 * 109.31194 * 54.63748 * 15 14 13 17 17 C 1.53001 * 109.45876 * 178.62977 * 16 15 14 18 18 N 1.46500 * 109.46179 * 58.65213 * 16 15 14 19 19 C 1.36940 * 119.99741 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00124 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99311 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00526 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99549 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47177 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47319 * 300.00244 * 23 21 19 26 26 H 1.48510 * 109.46888 * 60.00345 * 23 21 19 27 27 C 1.53039 * 109.52744 * 298.63803 * 16 15 14 28 28 C 1.46921 * 120.63253 * 354.20217 * 13 11 10 29 29 H 1.08992 * 109.47262 * 299.99741 * 1 2 3 30 30 H 1.09006 * 109.47190 * 60.00223 * 1 2 3 31 31 H 1.09005 * 109.46906 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46762 * 239.99719 * 2 1 3 33 33 H 1.08998 * 109.46914 * 120.00012 * 2 1 3 34 34 H 1.08997 * 109.46920 * 90.00105 * 7 6 5 35 35 H 1.08996 * 109.47403 * 210.00310 * 7 6 5 36 36 H 1.08998 * 109.46839 * 330.00623 * 7 6 5 37 37 H 1.07996 * 120.27225 * 179.97438 * 8 6 5 38 38 H 1.08001 * 120.82730 * 180.29422 * 9 8 6 39 39 H 1.08997 * 109.58529 * 6.62743 * 14 13 11 40 40 H 1.08994 * 109.58829 * 246.20387 * 14 13 11 41 41 H 1.09001 * 109.49624 * 294.68588 * 15 14 13 42 42 H 1.08994 * 109.52152 * 174.60484 * 15 14 13 43 43 H 1.09002 * 109.46934 * 300.02400 * 17 16 15 44 44 H 1.08998 * 109.47300 * 60.02573 * 17 16 15 45 45 H 1.09005 * 109.47248 * 180.02562 * 17 16 15 46 46 H 0.96990 * 120.00062 * 359.97438 * 18 16 15 47 47 H 0.97002 * 119.99995 * 359.97438 * 22 21 19 48 48 H 1.09002 * 109.49902 * 181.31218 * 27 16 15 49 49 H 1.08998 * 109.50293 * 301.40782 * 27 16 15 50 50 H 1.09000 * 109.58747 * 353.36678 * 28 13 11 51 51 H 1.08998 * 109.58648 * 113.80202 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.3265 -0.6352 0.0011 8 6 6.0626 1.8474 0.0011 9 6 5.2713 2.9822 -0.0052 10 6 3.8806 2.8229 0.0002 11 6 2.9900 3.9990 -0.0008 12 8 2.1236 4.1049 -0.8473 13 7 3.1367 4.9561 0.9367 14 6 2.3447 6.1921 0.8750 15 6 1.6285 6.3861 2.2153 16 6 2.6570 6.3546 3.3480 17 6 1.9496 6.5822 4.6854 18 7 3.6500 7.4105 3.1351 19 6 4.6751 7.5764 4.0278 20 1 4.7518 6.9286 4.8884 21 6 5.6156 8.5773 3.8263 22 7 5.5219 9.3671 2.7777 23 14 7.0144 8.8031 5.0436 24 1 7.8756 9.9305 4.6045 25 1 6.4577 9.0993 6.3880 26 1 7.8225 7.5587 5.1055 27 6 3.3563 4.9934 3.3663 28 6 4.0921 4.7836 2.0395 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.5346 -0.9334 -1.0264 35 1 7.2641 -0.4232 0.5149 36 1 5.8048 -1.4425 0.5151 37 1 7.1390 1.9342 0.0015 38 1 5.7155 3.9666 -0.0097 39 1 1.6084 6.1147 0.0751 40 1 3.0038 7.0395 0.6869 41 1 0.9036 5.5850 2.3597 42 1 1.1140 7.3470 2.2176 43 1 1.4519 7.5519 4.6727 44 1 1.2108 5.7966 4.8439 45 1 2.6821 6.5603 5.4923 46 1 3.5813 7.9921 2.3619 47 1 4.7957 9.2496 2.1454 48 1 4.0722 4.9632 4.1877 49 1 2.6152 4.2054 3.4999 50 1 4.5087 3.7769 2.0079 51 1 4.8938 5.5162 1.9463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274389558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:39 Heat of formation + Delta-G solvation = -25.389062 kcal Electronic energy + Delta-G solvation = -32232.321960 eV Core-core repulsion = 28132.374228 eV Total energy + Delta-G solvation = -4099.947732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12185 -39.64616 -38.30585 -37.73134 -34.63133 -33.45301 -32.57639 -32.34097 -31.10081 -30.74194 -28.85337 -28.28664 -27.39978 -24.28908 -23.89211 -23.42425 -22.94776 -22.54311 -22.03472 -20.07186 -18.64074 -18.31285 -17.20174 -17.02500 -16.80695 -16.47217 -15.81868 -15.10358 -14.86881 -14.72128 -14.44184 -14.26730 -14.12855 -13.88828 -13.62090 -13.55614 -13.33271 -13.24995 -12.87108 -12.76008 -12.63296 -12.55353 -12.37745 -12.28381 -12.01089 -11.67103 -11.59998 -11.37157 -11.26594 -10.88702 -10.82414 -10.78371 -10.56657 -10.29349 -10.14953 -9.99353 -9.95577 -9.81529 -9.44535 -9.10477 -8.95365 -8.55648 -8.23624 -7.04825 -6.10313 -3.10844 0.69160 1.11856 2.77400 2.89499 3.21121 3.48654 3.51470 3.59127 3.69140 3.92285 4.52475 4.61401 4.64106 4.79281 4.83454 4.88835 5.01121 5.10943 5.19572 5.20905 5.27798 5.28582 5.29386 5.36482 5.50298 5.52917 5.57066 5.65916 5.67157 5.69810 5.72590 5.76748 5.89101 5.90994 5.98804 6.00880 6.11732 6.19783 6.24359 6.34289 6.38373 6.44816 6.51793 6.70346 6.77842 6.96345 7.01429 7.11416 7.60171 7.72423 7.80385 8.38698 8.74135 9.20766 10.07450 10.23605 11.37417 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003443 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.938962 B = 8131.492385 C = 9410.061037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.288 6.288 4 C 0.368 3.632 5 N -0.544 5.544 6 C 0.182 3.818 7 C -0.106 4.106 8 C -0.214 4.214 9 C -0.004 4.004 10 C -0.200 4.200 11 C 0.570 3.430 12 O -0.537 6.537 13 N -0.594 5.594 14 C 0.119 3.881 15 C -0.131 4.131 16 C 0.203 3.797 17 C -0.148 4.148 18 N -0.728 5.728 19 C -0.322 4.322 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.945 5.945 23 Si 1.074 2.926 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.296 1.296 27 C -0.132 4.132 28 C 0.116 3.884 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.367 0.633 47 H 0.254 0.746 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.067 0.933 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -19.772 -4.580 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.194 6.194 4 C 0.189 3.811 5 N -0.269 5.269 6 C 0.044 3.956 7 C -0.163 4.163 8 C -0.235 4.235 9 C -0.029 4.029 10 C -0.206 4.206 11 C 0.357 3.643 12 O -0.415 6.415 13 N -0.326 5.326 14 C -0.004 4.004 15 C -0.169 4.169 16 C 0.112 3.888 17 C -0.208 4.208 18 N -0.372 5.372 19 C -0.453 4.453 20 H 0.082 0.918 21 C -0.242 4.242 22 N -0.590 5.590 23 Si 0.906 3.094 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.224 1.224 27 C -0.173 4.173 28 C -0.006 4.006 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.584 -19.548 -4.476 20.219 hybrid contribution -0.891 -0.115 -0.317 0.953 sum -3.475 -19.662 -4.793 20.534 Atomic orbital electron populations 1.21811 0.92904 1.02653 1.03672 1.22641 0.95009 0.80991 1.02315 1.86351 1.16136 1.30465 1.86438 1.19577 0.84235 0.88240 0.89093 1.67205 1.06024 1.32410 1.21287 1.21107 0.88701 0.95307 0.90449 1.20789 0.98036 0.94108 1.03388 1.21736 1.01627 0.92094 1.08001 1.21667 0.90784 1.00336 0.90121 1.19858 0.94587 0.92448 1.13672 1.17782 0.83164 0.81761 0.81570 1.90754 1.34282 1.77849 1.38573 1.48008 1.40878 1.17994 1.25724 1.21554 0.95049 0.85557 0.98199 1.22102 0.98093 1.01949 0.94764 1.19454 0.88527 0.88534 0.92275 1.22191 0.99464 0.99863 0.99257 1.42516 1.29082 1.36453 1.29116 1.19910 1.04621 1.15983 1.04768 0.91780 1.25634 1.01696 0.94993 1.01850 1.70886 1.34320 1.40306 1.13506 0.83307 0.75798 0.75844 0.74451 1.21189 1.22432 1.22382 1.22266 0.99789 0.98353 0.96855 1.21787 0.91981 1.01226 0.85646 0.91584 0.91449 0.90358 0.91613 0.91641 0.89976 0.90080 0.90331 0.83836 0.83330 0.89658 0.90903 0.91716 0.90861 0.93249 0.94555 0.92483 0.79924 0.93435 0.90622 0.93385 0.91467 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.03 16 2 C 0.07 0.75 6.03 37.16 0.22 0.97 16 3 O -0.29 -4.47 9.31 -21.48 -0.20 -4.67 16 4 C 0.37 5.64 7.50 -16.61 -0.12 5.52 16 5 N -0.54 -7.24 9.11 -9.21 -0.08 -7.32 16 6 C 0.18 1.99 6.78 -82.53 -0.56 1.44 16 7 C -0.11 -0.75 10.16 36.01 0.37 -0.38 16 8 C -0.21 -2.28 9.71 -39.50 -0.38 -2.67 16 9 C 0.00 -0.05 7.92 -38.89 -0.31 -0.35 16 10 C -0.20 -3.12 4.62 -104.69 -0.48 -3.61 16 11 C 0.57 10.25 6.86 -12.47 -0.09 10.17 16 12 O -0.54 -11.14 16.17 1.79 0.03 -11.11 16 13 N -0.59 -10.24 2.97 -174.01 -0.52 -10.76 16 14 C 0.12 2.05 6.17 -3.71 -0.02 2.02 16 15 C -0.13 -2.18 4.96 -26.61 -0.13 -2.32 16 16 C 0.20 3.79 0.74 -131.78 -0.10 3.70 16 17 C -0.15 -2.68 8.44 37.16 0.31 -2.36 16 18 N -0.73 -16.44 4.13 -47.20 -0.19 -16.64 16 19 C -0.32 -8.21 8.68 -15.06 -0.13 -8.34 16 20 H 0.06 1.63 6.70 -52.49 -0.35 1.27 16 21 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 22 N -0.94 -27.80 13.70 55.49 0.76 -27.04 16 23 Si 1.07 24.84 29.92 -169.99 -5.09 19.75 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.13 -2.32 4.70 -26.62 -0.13 -2.45 16 28 C 0.12 1.96 5.35 -3.72 -0.02 1.94 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 1.80 7.80 -52.49 -0.41 1.40 16 39 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 40 H 0.07 1.33 6.94 -51.93 -0.36 0.97 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.10 7.27 -51.93 -0.38 0.72 16 46 H 0.37 8.74 5.29 -40.82 -0.22 8.52 16 47 H 0.25 7.38 6.77 -40.82 -0.28 7.10 16 48 H 0.08 1.40 7.31 -51.93 -0.38 1.02 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 1.03 5.38 -51.93 -0.28 0.75 16 51 H 0.09 1.70 7.74 -51.93 -0.40 1.30 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -32.39 402.99 -8.63 -41.02 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.12 Total: 9.75 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.28 Total: 0.96 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.04 Total: -61.77 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.17 Total: -15.78 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.39 -8.63 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274389558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.628 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds